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Spg013214 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg013214
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H-like superfamily protein
Genome locationscaffold1:11718250..11720505
RNA-Seq ExpressionSpg013214
SyntenySpg013214
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3453417.1 reverse transcriptase [Gossypium australe]3.0e-0423.97Show/hide
Query:  NDALAGIFCREDDVEKIQDIPIAGDSLPDTFFWHYDKTGKYTVRSGYKLAIDGCHEASSS---------------ANSFGC-----SWLHENLSDGDMTI
        ND L      E+   +I+ IP  G SL DT  W ++ +G Y+VRSGY++      +A++S                   GC     +       +    I
Subjt:  NDALAGIFCREDDVEKIQDIPIAGDSLPDTFFWHYDKTGKYTVRSGYKLAIDGCHEASSS---------------ANSFGC-----SWLHENLSDGDMTI

Query:  FVATIWSIWNNINKCVFQGNRINFQQADNPLDWASSYISDYVEAQT
           ++WS+W   NK + +G +    Q +  +D+   Y  + +   T
Subjt:  FVATIWSIWNNINKCVFQGNRINFQQADNPLDWASSYISDYVEAQT

TXG72736.1 hypothetical protein EZV62_001315 [Acer yangbiense]4.6e-0528.57Show/hide
Query:  NDALAGIFCREDDVEKIQDIPIAGDSLPDTFFWHYDKTGKYTVRSGYKLAID-----------GCHEASSSANSFGCSWLHENLSDGDMTIFVATIWSIW
        N AL       DD   I ++P    +  DT  WH+DK G Y+VR GYKLA+D            C  AS  +      +L  ++++    +F+   W +W
Subjt:  NDALAGIFCREDDVEKIQDIPIAGDSLPDTFFWHYDKTGKYTVRSGYKLAID-----------GCHEASSSANSFGCSWLHENLSDGDMTIFVATIWSIW

Query:  NNINKCVFQGNRINFQQADNPLDWASSYISDYVEAQTKRH
         N N CV  G+  ++  AD  + W  ++ +++  A    H
Subjt:  NNINKCVFQGNRINFQQADNPLDWASSYISDYVEAQTKRH

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]2.7e-0546.77Show/hide
Query:  FCREDDVEKIQDIPIAGDSLPDTFFWHYDKTGKYTVRSGYKLAID-GCHEASSSANSFGCSW
        FC ED  + I  +PI+  +L D++ WHYDK G Y+VRSGYKL +   C+  S+S N  G  W
Subjt:  FCREDDVEKIQDIPIAGDSLPDTFFWHYDKTGKYTVRSGYKLAID-GCHEASSSANSFGCSW

XP_023924015.1 uncharacterized protein LOC112035419 [Quercus suber]7.1e-0628.46Show/hide
Query:  DALAGIFCREDDVEKIQDIPIAGDSLPDTFFWHYDKTGKYTVRSGYKLAIDGCHEASSSANSFGCSWLHENLSDGDMTIFVATIWSIWNNINKCVFQGNR
        + +  IF R DD E I  + ++   + D+  W Y+K G ++V+S YK    G  +           +L + L+  ++ +F    W  WN  N+ VF GN 
Subjt:  DALAGIFCREDDVEKIQDIPIAGDSLPDTFFWHYDKTGKYTVRSGYKLAIDGCHEASSSANSFGCSWLHENLSDGDMTIFVATIWSIWNNINKCVFQGNR

Query:  INFQQADNPLDWASSYISDYVEA
        I+ +  +N    A  Y++DY +A
Subjt:  INFQQADNPLDWASSYISDYVEA

XP_024039171.1 uncharacterized protein LOC112097822 [Citrus clementina]5.1e-0430.23Show/hide
Query:  DDVEKIQDIPIAGDSLPDTFFWHYDKTGKYTVRSGYKLAIDGCHEASSSANSFGCSWLHENLSDGDMTIFVATIWSIWNNINKCVF
        DDV  I  I +      D + WH+D++G Y+VRSGYK+A+   +    S +          +S  +  +  A++W+IW+  N+  F
Subjt:  DDVEKIQDIPIAGDSLPDTFFWHYDKTGKYTVRSGYKLAIDGCHEASSSANSFGCSWLHENLSDGDMTIFVATIWSIWNNINKCVF

TrEMBL top hitse value%identityAlignment
A0A5B6U9C3 Reverse transcriptase1.4e-0423.97Show/hide
Query:  NDALAGIFCREDDVEKIQDIPIAGDSLPDTFFWHYDKTGKYTVRSGYKLAIDGCHEASSS---------------ANSFGC-----SWLHENLSDGDMTI
        ND L      E+   +I+ IP  G SL DT  W ++ +G Y+VRSGY++      +A++S                   GC     +       +    I
Subjt:  NDALAGIFCREDDVEKIQDIPIAGDSLPDTFFWHYDKTGKYTVRSGYKLAIDGCHEASSS---------------ANSFGC-----SWLHENLSDGDMTI

Query:  FVATIWSIWNNINKCVFQGNRINFQQADNPLDWASSYISDYVEAQT
           ++WS+W   NK + +G +    Q +  +D+   Y  + +   T
Subjt:  FVATIWSIWNNINKCVFQGNRINFQQADNPLDWASSYISDYVEAQT

A0A5B6WM06 Reverse transcriptase3.2e-0433.33Show/hide
Query:  NDALAGIFCREDDVEKIQDIPIAGDSLPDTFFWHYDKTGKYTVRSGY------KLAIDGCHEASSSANSFGCSWLHENLSDGDMTIFVA-TIWSIW
        ND L      ED   +I+ IPI+G SL DT  W ++ +G Y+VRSGY      +L I    E+  +  SF   +     ++     F+A ++WS+W
Subjt:  NDALAGIFCREDDVEKIQDIPIAGDSLPDTFFWHYDKTGKYTVRSGY------KLAIDGCHEASSSANSFGCSWLHENLSDGDMTIFVA-TIWSIW

A0A5C7IW34 Uncharacterized protein2.2e-0528.57Show/hide
Query:  NDALAGIFCREDDVEKIQDIPIAGDSLPDTFFWHYDKTGKYTVRSGYKLAID-----------GCHEASSSANSFGCSWLHENLSDGDMTIFVATIWSIW
        N AL       DD   I ++P    +  DT  WH+DK G Y+VR GYKLA+D            C  AS  +      +L  ++++    +F+   W +W
Subjt:  NDALAGIFCREDDVEKIQDIPIAGDSLPDTFFWHYDKTGKYTVRSGYKLAID-----------GCHEASSSANSFGCSWLHENLSDGDMTIFVATIWSIW

Query:  NNINKCVFQGNRINFQQADNPLDWASSYISDYVEAQTKRH
         N N CV  G+  ++  AD  + W  ++ +++  A    H
Subjt:  NNINKCVFQGNRINFQQADNPLDWASSYISDYVEAQTKRH

A0A6J1DX30 uncharacterized protein LOC1110248741.3e-0546.77Show/hide
Query:  FCREDDVEKIQDIPIAGDSLPDTFFWHYDKTGKYTVRSGYKLAID-GCHEASSSANSFGCSW
        FC ED  + I  +PI+  +L D++ WHYDK G Y+VRSGYKL +   C+  S+S N  G  W
Subjt:  FCREDDVEKIQDIPIAGDSLPDTFFWHYDKTGKYTVRSGYKLAID-GCHEASSSANSFGCSW

A0A803PD64 Uncharacterized protein2.2e-0529.8Show/hide
Query:  DDVEKIQDIPIAGDSLPDTFFWHYDKTGKYTVRSGYKLAIDGCHEASSSANS------FGCS-----W----------LHEN-------------LSDGD
        D V  I  +PI G +  D   W  D +G  TV+S Y L+       SSS           CS     W          LH N             L+  D
Subjt:  DDVEKIQDIPIAGDSLPDTFFWHYDKTGKYTVRSGYKLAIDGCHEASSSANS------FGCS-----W----------LHEN-------------LSDGD

Query:  MTIFVATIWSIWNNINKCVFQGNRINFQQADNPLDWASSYISDYVEAQTKR
         ++ + T+WSIW   NK +F+    N   A + + W S+++S Y EAQ KR
Subjt:  MTIFVATIWSIWNNINKCVFQGNRINFQQADNPLDWASSYISDYVEAQTKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein4.2e-0440.82Show/hide
Query:  NDALAGIFCREDDVEKIQDIPIAGDSLPDTFFWHYDKTGKYTVRSGYKL
        +D+    F  + D   I  I +A    PD   W+Y+ TG+YTVRSGY L
Subjt:  NDALAGIFCREDDVEKIQDIPIAGDSLPDTFFWHYDKTGKYTVRSGYKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCCCGAAGGATACGATGAAGGCGGCTTCAGTCTACCACGGTTTGCAAATTGTGAACGACGCTCTTGCAGGGATTTTCTGTAGGGAGGATGATGTGGAAAAAATTCA
AGATATCCCAATTGCAGGTGATAGTCTTCCAGATACTTTCTTTTGGCATTATGACAAAACAGGAAAGTATACAGTCCGGAGCGGCTATAAACTTGCAATAGATGGATGTC
ATGAGGCATCTTCATCAGCGAATTCCTTTGGCTGCTCTTGGTTACACGAAAACCTAAGCGATGGTGATATGACAATCTTTGTGGCAACTATATGGTCCATATGGAACAAC
ATAAATAAATGTGTTTTTCAGGGTAACAGGATCAACTTCCAGCAGGCAGACAACCCTTTAGATTGGGCATCAAGTTACATTTCAGACTATGTGGAGGCTCAAACAAAGCG
TCATGGCGATCACAAGCGATCGGGAGAAATGATATCTCCCGCCAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCCCGAAGGATACGATGAAGGCGGCTTCAGTCTACCACGGTTTGCAAATTGTGAACGACGCTCTTGCAGGGATTTTCTGTAGGGAGGATGATGTGGAAAAAATTCA
AGATATCCCAATTGCAGGTGATAGTCTTCCAGATACTTTCTTTTGGCATTATGACAAAACAGGAAAGTATACAGTCCGGAGCGGCTATAAACTTGCAATAGATGGATGTC
ATGAGGCATCTTCATCAGCGAATTCCTTTGGCTGCTCTTGGTTACACGAAAACCTAAGCGATGGTGATATGACAATCTTTGTGGCAACTATATGGTCCATATGGAACAAC
ATAAATAAATGTGTTTTTCAGGGTAACAGGATCAACTTCCAGCAGGCAGACAACCCTTTAGATTGGGCATCAAGTTACATTTCAGACTATGTGGAGGCTCAAACAAAGCG
TCATGGCGATCACAAGCGATCGGGAGAAATGATATCTCCCGCCAAGTAG
Protein sequenceShow/hide protein sequence
MIPKDTMKAASVYHGLQIVNDALAGIFCREDDVEKIQDIPIAGDSLPDTFFWHYDKTGKYTVRSGYKLAIDGCHEASSSANSFGCSWLHENLSDGDMTIFVATIWSIWNN
INKCVFQGNRINFQQADNPLDWASSYISDYVEAQTKRHGDHKRSGEMISPAK