CuGenDBv2

Gene ID	Spg013258
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	SHR-BD domain-containing protein
Genome location	scaffold1:9345372..9346741
RNA-Seq Expression	Spg013258
Synteny	Spg013258
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR026847 - Vacuolar protein sorting-associated protein 13

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022132799.1 uncharacterized protein LOC111005570 isoform X1 [Momordica charantia]

9.2e-38

86.46

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Query:  AQDSRTYPGPLIVVEISQHPEDGLLIVVSPVTRIHNESGLTMELRFRRNQPKEDECASVFLKPGDVIDDSMAMFDALNSSGGLRKALMSLCVDDTL
        A+DSRTYPGPLIVVEIS+HPEDGL IVVSP+TRIHNESGLTMELRFRRNQPKEDECASV ++P DVIDDSM MFDALNSSGGLRKALMSL V + L
Subjt:  AQDSRTYPGPLIVVEISQHPEDGLLIVVSPVTRIHNESGLTMELRFRRNQPKEDECASVFLKPGDVIDDSMAMFDALNSSGGLRKALMSLCVDDTL

XP_022132800.1 uncharacterized protein LOC111005570 isoform X2 [Momordica charantia]

9.2e-38

86.46

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Query:  AQDSRTYPGPLIVVEISQHPEDGLLIVVSPVTRIHNESGLTMELRFRRNQPKEDECASVFLKPGDVIDDSMAMFDALNSSGGLRKALMSLCVDDTL
        A+DSRTYPGPLIVVEIS+HPEDGL IVVSP+TRIHNESGLTMELRFRRNQPKEDECASV ++P DVIDDSM MFDALNSSGGLRKALMSL V + L
Subjt:  AQDSRTYPGPLIVVEISQHPEDGLLIVVSPVTRIHNESGLTMELRFRRNQPKEDECASVFLKPGDVIDDSMAMFDALNSSGGLRKALMSLCVDDTL

XP_022132801.1 uncharacterized protein LOC111005570 isoform X3 [Momordica charantia]

9.2e-38

86.46

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Query:  AQDSRTYPGPLIVVEISQHPEDGLLIVVSPVTRIHNESGLTMELRFRRNQPKEDECASVFLKPGDVIDDSMAMFDALNSSGGLRKALMSLCVDDTL
        A+DSRTYPGPLIVVEIS+HPEDGL IVVSP+TRIHNESGLTMELRFRRNQPKEDECASV ++P DVIDDSM MFDALNSSGGLRKALMSL V + L
Subjt:  AQDSRTYPGPLIVVEISQHPEDGLLIVVSPVTRIHNESGLTMELRFRRNQPKEDECASVFLKPGDVIDDSMAMFDALNSSGGLRKALMSLCVDDTL

XP_022132802.1 uncharacterized protein LOC111005570 isoform X4 [Momordica charantia]

9.2e-38

86.46

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Query:  AQDSRTYPGPLIVVEISQHPEDGLLIVVSPVTRIHNESGLTMELRFRRNQPKEDECASVFLKPGDVIDDSMAMFDALNSSGGLRKALMSLCVDDTL
        A+DSRTYPGPLIVVEIS+HPEDGL IVVSP+TRIHNESGLTMELRFRRNQPKEDECASV ++P DVIDDSM MFDALNSSGGLRKALMSL V + L
Subjt:  AQDSRTYPGPLIVVEISQHPEDGLLIVVSPVTRIHNESGLTMELRFRRNQPKEDECASVFLKPGDVIDDSMAMFDALNSSGGLRKALMSLCVDDTL

XP_022132804.1 uncharacterized protein LOC111005570 isoform X6 [Momordica charantia]

9.2e-38

86.46

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Query:  AQDSRTYPGPLIVVEISQHPEDGLLIVVSPVTRIHNESGLTMELRFRRNQPKEDECASVFLKPGDVIDDSMAMFDALNSSGGLRKALMSLCVDDTL
        A+DSRTYPGPLIVVEIS+HPEDGL IVVSP+TRIHNESGLTMELRFRRNQPKEDECASV ++P DVIDDSM MFDALNSSGGLRKALMSL V + L
Subjt:  AQDSRTYPGPLIVVEISQHPEDGLLIVVSPVTRIHNESGLTMELRFRRNQPKEDECASVFLKPGDVIDDSMAMFDALNSSGGLRKALMSLCVDDTL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1BTB2 uncharacterized protein LOC111005570 isoform X3

4.5e-38

86.46

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Query:  AQDSRTYPGPLIVVEISQHPEDGLLIVVSPVTRIHNESGLTMELRFRRNQPKEDECASVFLKPGDVIDDSMAMFDALNSSGGLRKALMSLCVDDTL
        A+DSRTYPGPLIVVEIS+HPEDGL IVVSP+TRIHNESGLTMELRFRRNQPKEDECASV ++P DVIDDSM MFDALNSSGGLRKALMSL V + L
Subjt:  AQDSRTYPGPLIVVEISQHPEDGLLIVVSPVTRIHNESGLTMELRFRRNQPKEDECASVFLKPGDVIDDSMAMFDALNSSGGLRKALMSLCVDDTL

A0A6J1BU46 uncharacterized protein LOC111005570 isoform X1

4.5e-38

86.46

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Query:  AQDSRTYPGPLIVVEISQHPEDGLLIVVSPVTRIHNESGLTMELRFRRNQPKEDECASVFLKPGDVIDDSMAMFDALNSSGGLRKALMSLCVDDTL
        A+DSRTYPGPLIVVEIS+HPEDGL IVVSP+TRIHNESGLTMELRFRRNQPKEDECASV ++P DVIDDSM MFDALNSSGGLRKALMSL V + L
Subjt:  AQDSRTYPGPLIVVEISQHPEDGLLIVVSPVTRIHNESGLTMELRFRRNQPKEDECASVFLKPGDVIDDSMAMFDALNSSGGLRKALMSLCVDDTL

A0A6J1BU52 uncharacterized protein LOC111005570 isoform X6

4.5e-38

86.46

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Query:  AQDSRTYPGPLIVVEISQHPEDGLLIVVSPVTRIHNESGLTMELRFRRNQPKEDECASVFLKPGDVIDDSMAMFDALNSSGGLRKALMSLCVDDTL
        A+DSRTYPGPLIVVEIS+HPEDGL IVVSP+TRIHNESGLTMELRFRRNQPKEDECASV ++P DVIDDSM MFDALNSSGGLRKALMSL V + L
Subjt:  AQDSRTYPGPLIVVEISQHPEDGLLIVVSPVTRIHNESGLTMELRFRRNQPKEDECASVFLKPGDVIDDSMAMFDALNSSGGLRKALMSLCVDDTL

A0A6J1BUV2 uncharacterized protein LOC111005570 isoform X4

4.5e-38

86.46

Show/hide

Query:  AQDSRTYPGPLIVVEISQHPEDGLLIVVSPVTRIHNESGLTMELRFRRNQPKEDECASVFLKPGDVIDDSMAMFDALNSSGGLRKALMSLCVDDTL
        A+DSRTYPGPLIVVEIS+HPEDGL IVVSP+TRIHNESGLTMELRFRRNQPKEDECASV ++P DVIDDSM MFDALNSSGGLRKALMSL V + L
Subjt:  AQDSRTYPGPLIVVEISQHPEDGLLIVVSPVTRIHNESGLTMELRFRRNQPKEDECASVFLKPGDVIDDSMAMFDALNSSGGLRKALMSLCVDDTL

A0A6J1BXC4 uncharacterized protein LOC111005570 isoform X5

4.5e-38

86.46

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Query:  AQDSRTYPGPLIVVEISQHPEDGLLIVVSPVTRIHNESGLTMELRFRRNQPKEDECASVFLKPGDVIDDSMAMFDALNSSGGLRKALMSLCVDDTL
        A+DSRTYPGPLIVVEIS+HPEDGL IVVSP+TRIHNESGLTMELRFRRNQPKEDECASV ++P DVIDDSM MFDALNSSGGLRKALMSL V + L
Subjt:  AQDSRTYPGPLIVVEISQHPEDGLLIVVSPVTRIHNESGLTMELRFRRNQPKEDECASVFLKPGDVIDDSMAMFDALNSSGGLRKALMSLCVDDTL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G50380.1 Protein of unknown function (DUF1162)

7.3e-25

53.57

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Query:  DSRTYPGPLIVVEISQHPEDGLLIVVSPVTRIHNESGLTMELRFRRNQPKEDECASVFLKPGDVIDDSMAMFDALNSSGGLRKALMSLCVDDTLPTPLNC
        DSR++PGP +VV+I +  EDGL I VSP+TRIHNE+ L +E+RF+R++ K DE ASV LKPG  IDDS+A F+A++SSG ++KAL SL V        N 
Subjt:  DSRTYPGPLIVVEISQHPEDGLLIVVSPVTRIHNESGLTMELRFRRNQPKEDECASVFLKPGDVIDDSMAMFDALNSSGGLRKALMSLCVDDTLPTPLNC

Query:  GLQNRIRKMETL
         L  R    ETL
Subjt:  GLQNRIRKMETL

Sequences

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CDS sequence

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ATGAGAAAAGCACAAGATTCAAGAACTTATCCAGGACCGCTCATTGTGGTTGAAATTTCTCAGCATCCTGAGGATGGTTTGTTAATTGTGGTTTCCCCTGTAACGAGAAT
ACATAATGAAAGTGGACTAACCATGGAACTTCGATTTCGACGAAACCAGCCAAAAGAAGATGAATGTGCTTCTGTGTTCCTAAAACCTGGAGATGTGATTGATGATTCAA
TGGCAATGTTTGATGCTTTAAATTCTTCCGGTGGATTGAGAAAGGCATTAATGTCTCTATGTGTTGATGATACCTTGCCTACACCTCTCAACTGTGGACTGCAAAATAGA
ATTAGGAAAATGGAAACCTTAGCTCCTAAGCTCAGAGTTTTGTAA

mRNA sequence

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Protein sequence

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MRKAQDSRTYPGPLIVVEISQHPEDGLLIVVSPVTRIHNESGLTMELRFRRNQPKEDECASVFLKPGDVIDDSMAMFDALNSSGGLRKALMSLCVDDTLPTPLNCGLQNR
IRKMETLAPKLRVL

Spg013258 (gene) of Sponge gourd (cylindrica) v1 genome