CuGenDBv2

Gene ID	Spg013379
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein SKIP34
Genome location	scaffold1:7152375..7152662
RNA-Seq Expression	Spg013379
Synteny	Spg013379
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008440533.1 PREDICTED: protein SKIP34 [Cucumis melo]

3.6e-34

88.54

Show/hide

Query:  MCNGHHRSFFRGSLSPYQTSVPENADASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVV-LLSPVPRK
        MCNGHHR  FRGS  PYQTSVPEN  ASVVDNLRGRL ETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQY DRQEYVV LLSPV RK
Subjt:  MCNGHHRSFFRGSLSPYQTSVPENADASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVV-LLSPVPRK

XP_011657944.1 protein SKIP34 [Cucumis sativus]

1.6e-34

88.54

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Query:  MCNGHHRSFFRGSLSPYQTSVPENADASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVV-LLSPVPRK
        MCNGHHR  FRGSL PYQTSVPEN   SVVDNLRGRL ETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQY DRQEYVV LLSPV RK
Subjt:  MCNGHHRSFFRGSLSPYQTSVPENADASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVV-LLSPVPRK

XP_022950522.1 protein SKIP34 [Cucurbita moschata]

3.6e-34

88.66

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Query:  MCNGHHRSFFRGSLSPYQTSVPEN-ADASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVV-LLSPVPRK
        MCNGHHRS FRGS+SP QTSVPEN  DASVVDNLRGRLAETESRLAQVRAREA LSRLLEEMKRLVSVMEILENYLKR+Y DRQEYVV LL+PV RK
Subjt:  MCNGHHRSFFRGSLSPYQTSVPEN-ADASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVV-LLSPVPRK

XP_022978829.1 protein SKIP34 [Cucurbita maxima]

3.3e-35

87.5

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Query:  MCNGHHRSFFRGSLSPYQTSVPENADASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVV-LLSPVPRK
        MCNGHHRS FRGS+SP QTSVPEN DASVVDNLRGRLAETESRLAQVRAREA LSR+LEEMKRLVSVMEIL+NYLKR+YRDRQEYVV LL+P+ RK
Subjt:  MCNGHHRSFFRGSLSPYQTSVPENADASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVV-LLSPVPRK

XP_023544310.1 protein SKIP34 [Cucurbita pepo subsp. pepo]

2.5e-35

88.54

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Query:  MCNGHHRSFFRGSLSPYQTSVPENADASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVV-LLSPVPRK
        MCNGHHRS FRG++SP QTSVPEN DASVVDNLRGRLAETESRLAQVRAREA LSRLLEEMKRLV VMEILENYLKR+YRDRQEYVV LL+PV RK
Subjt:  MCNGHHRSFFRGSLSPYQTSVPENADASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVV-LLSPVPRK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KIR5 Uncharacterized protein

7.9e-35

88.54

Show/hide

Query:  MCNGHHRSFFRGSLSPYQTSVPENADASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVV-LLSPVPRK
        MCNGHHR  FRGSL PYQTSVPEN   SVVDNLRGRL ETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQY DRQEYVV LLSPV RK
Subjt:  MCNGHHRSFFRGSLSPYQTSVPENADASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVV-LLSPVPRK

A0A1S3B1B8 protein SKIP34

1.8e-34

88.54

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Query:  MCNGHHRSFFRGSLSPYQTSVPENADASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVV-LLSPVPRK
        MCNGHHR  FRGS  PYQTSVPEN  ASVVDNLRGRL ETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQY DRQEYVV LLSPV RK
Subjt:  MCNGHHRSFFRGSLSPYQTSVPENADASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVV-LLSPVPRK

A0A5D3CN14 Protein SKIP34

1.8e-34

88.54

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Query:  MCNGHHRSFFRGSLSPYQTSVPENADASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVV-LLSPVPRK
        MCNGHHR  FRGS  PYQTSVPEN  ASVVDNLRGRL ETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQY DRQEYVV LLSPV RK
Subjt:  MCNGHHRSFFRGSLSPYQTSVPENADASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVV-LLSPVPRK

A0A6J1GF20 protein SKIP34

1.8e-34

88.66

Show/hide

Query:  MCNGHHRSFFRGSLSPYQTSVPEN-ADASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVV-LLSPVPRK
        MCNGHHRS FRGS+SP QTSVPEN  DASVVDNLRGRLAETESRLAQVRAREA LSRLLEEMKRLVSVMEILENYLKR+Y DRQEYVV LL+PV RK
Subjt:  MCNGHHRSFFRGSLSPYQTSVPEN-ADASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVV-LLSPVPRK

A0A6J1IV54 protein SKIP34

1.6e-35

87.5

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Query:  MCNGHHRSFFRGSLSPYQTSVPENADASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVV-LLSPVPRK
        MCNGHHRS FRGS+SP QTSVPEN DASVVDNLRGRLAETESRLAQVRAREA LSR+LEEMKRLVSVMEIL+NYLKR+YRDRQEYVV LL+P+ RK
Subjt:  MCNGHHRSFFRGSLSPYQTSVPENADASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVV-LLSPVPRK

SwissProt top hits

e value

%identity

Alignment

Q8GWU7 Protein SKIP34

1.8e-15

52.08

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Query:  MCNGHHRSFFRGSLSPYQTSVPENADASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVV-LLSPVPRK
        MC GH++S    S S  +    +  D SVVD+LR RLAETE+RL + RAREAELSR LE MKR VSVMEI+E +L+R+++++++ +  L SPV  K
Subjt:  MCNGHHRSFFRGSLSPYQTSVPENADASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVV-LLSPVPRK

Arabidopsis top hits

e value

%identity

Alignment

AT5G65495.1 unknown protein

1.2e-16

52.08

Show/hide

Query:  MCNGHHRSFFRGSLSPYQTSVPENADASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVV-LLSPVPRK
        MC GH++S    S S  +    +  D SVVD+LR RLAETE+RL + RAREAELSR LE MKR VSVMEI+E +L+R+++++++ +  L SPV  K
Subjt:  MCNGHHRSFFRGSLSPYQTSVPENADASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVV-LLSPVPRK

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTGTAACGGCCACCACCGATCTTTCTTTAGAGGTAGCCTTTCTCCCTACCAAACCTCCGTACCGGAAAACGCCGACGCTTCCGTTGTGGACAATCTTCGGGGTCGATT
GGCGGAAACCGAGTCGCGACTGGCCCAAGTTAGGGCTCGAGAGGCGGAGCTCAGCCGCCTCTTGGAGGAAATGAAACGTTTAGTCTCTGTGATGGAGATCCTTGAGAACT
ACCTGAAGCGGCAGTATCGCGACCGCCAAGAGTATGTGGTTCTCCTCTCCCCTGTACCTCGAAAATAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MCNGHHRSFFRGSLSPYQTSVPENADASVVDNLRGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVLLSPVPRK

Spg013379 (gene) of Sponge gourd (cylindrica) v1 genome