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Spg013395 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg013395
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptiontrafficking protein particle complex subunit 11
Genome locationscaffold1:17193233..17195513
RNA-Seq ExpressionSpg013395
SyntenySpg013395
Gene Ontology termsGO:0019430 - removal of superoxide radicals (biological process)
GO:0005794 - Golgi apparatus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0004791 - thioredoxin-disulfide reductase activity (molecular function)
InterPro domainsIPR005508 - B3 domain-containing protein At2g31720-like
IPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6594726.1 Trafficking protein particle complex subunit 11, partial [Cucurbita argyrosperma subsp. sororia]3.9e-1989.09Show/hide
Query:  MENYPEELRTPPVRLISLVGCPELHPTISTHLLSEQPPIHTLAFPDISKISFLPP
        M+NYPEELRTPPVRLISLVGCP+LHPTIS HLLSEQPPIHTLAFPD+S ISFL P
Subjt:  MENYPEELRTPPVRLISLVGCPELHPTISTHLLSEQPPIHTLAFPDISKISFLPP

XP_008440933.1 PREDICTED: LOW QUALITY PROTEIN: trafficking protein particle complex subunit 11 [Cucumis melo]7.8e-2083.33Show/hide
Query:  MENYPEELRTPPVRLISLVGCPELHPTISTHLLSEQPPIHTLAFPDISKISFLPPHSFPQ
        M+NYPEEL+TPPVRLISLVGCP+LHPTISTHLLS+QPPIHTLAFPD+SKISFL P   P+
Subjt:  MENYPEELRTPPVRLISLVGCPELHPTISTHLLSEQPPIHTLAFPDISKISFLPPHSFPQ

XP_022132622.1 trafficking protein particle complex subunit 11 [Momordica charantia]1.6e-2086.67Show/hide
Query:  MENYPEELRTPPVRLISLVGCPELHPTISTHLLSEQPPIHTLAFPDISKISFLPPHSFPQ
        M+NYPEELRTPPVRLISLVGCPELHPTIS+HLLSEQPPIHTLAFPD+SKISFL P   P+
Subjt:  MENYPEELRTPPVRLISLVGCPELHPTISTHLLSEQPPIHTLAFPDISKISFLPPHSFPQ

XP_022156187.1 VID27-like protein [Momordica charantia]7.3e-4243.88Show/hide
Query:  ETEIEEQKDVSMKDSAKPESSSAAAATLENQESSESYGEEETEPG-----------------VLQNLPLKSMEIEERKDVPMKESTKPES------SSAA
        ET  +E +D +    +  ES + A    EN E  +   EE  +                   V Q +   +MEIEE KDV M+E+T+ ES      S+AA
Subjt:  ETEIEEQKDVSMKDSAKPESSSAAAATLENQESSESYGEEETEPG-----------------VLQNLPLKSMEIEERKDVPMKESTKPES------SSAA

Query:  AAAEDQESPDSDGDQ-ETEPVVFRNLPPNFPTRFTTLIEDPESIRPRILIEKRLRQANVDLTRDRLPISAKKMKETFLVPDEETRLKSGDVMEVNVIEPE
         AA DQ+S +SDG++ ETE  +  N PPNFP  FT  + DP SIRPRIL+EK+LR+++VD  R+RL I AKK+KE FL+ DEE R+ +G+ MEV VIEP+
Subjt:  AAAEDQESPDSDGDQ-ETEPVVFRNLPPNFPTRFTTLIEDPESIRPRILIEKRLRQANVDLTRDRLPISAKKMKETFLVPDEETRLKSGDVMEVNVIEPE

Query:  GRAVSLLTLRRRR---RRRKTYELIDGWNYVVARNINALKAGELVRVWYFR-----VKGELWFALEVL-GDEQKDSEISKQLVDKWYGQKVFFP
           VS +TLRRRR    +  +Y L   W+ VVARN +ALK G  VRVWYF      V   L FA+EV    +  D E  K+L  KW+GQ +F P
Subjt:  GRAVSLLTLRRRR---RRRKTYELIDGWNYVVARNINALKAGELVRVWYFR-----VKGELWFALEVL-GDEQKDSEISKQLVDKWYGQKVFFP

XP_038881668.1 trafficking protein particle complex subunit 11 isoform X1 [Benincasa hispida]1.0e-1987.72Show/hide
Query:  MENYPEELRTPPVRLISLVGCPELHPTISTHLLSEQPPIHTLAFPDISKISFLPPHS
        M+NYPEEL+TPPVRLISLVGCP+LHPTISTHLLS+QPPIHTLAFPD+SKISFL P S
Subjt:  MENYPEELRTPPVRLISLVGCPELHPTISTHLLSEQPPIHTLAFPDISKISFLPPHS

TrEMBL top hitse value%identityAlignment
A0A0A0KJQ1 Foie-gras_1 domain-containing protein1.9e-1983.05Show/hide
Query:  MENYPEELRTPPVRLISLVGCPELHPTISTHLLSEQPPIHTLAFPDISKISFLPPHSFP
        M++YPEEL+TPPVRLISLVGCP+LHPTISTHLLS+QPPIHTLAFPD+SKISFL P   P
Subjt:  MENYPEELRTPPVRLISLVGCPELHPTISTHLLSEQPPIHTLAFPDISKISFLPPHSFP

A0A1S3B1T6 LOW QUALITY PROTEIN: trafficking protein particle complex subunit 113.8e-2083.33Show/hide
Query:  MENYPEELRTPPVRLISLVGCPELHPTISTHLLSEQPPIHTLAFPDISKISFLPPHSFPQ
        M+NYPEEL+TPPVRLISLVGCP+LHPTISTHLLS+QPPIHTLAFPD+SKISFL P   P+
Subjt:  MENYPEELRTPPVRLISLVGCPELHPTISTHLLSEQPPIHTLAFPDISKISFLPPHSFPQ

A0A6J1BUC4 trafficking protein particle complex subunit 117.6e-2186.67Show/hide
Query:  MENYPEELRTPPVRLISLVGCPELHPTISTHLLSEQPPIHTLAFPDISKISFLPPHSFPQ
        M+NYPEELRTPPVRLISLVGCPELHPTIS+HLLSEQPPIHTLAFPD+SKISFL P   P+
Subjt:  MENYPEELRTPPVRLISLVGCPELHPTISTHLLSEQPPIHTLAFPDISKISFLPPHSFPQ

A0A6J1DRC9 VID27-like protein3.5e-4243.88Show/hide
Query:  ETEIEEQKDVSMKDSAKPESSSAAAATLENQESSESYGEEETEPG-----------------VLQNLPLKSMEIEERKDVPMKESTKPES------SSAA
        ET  +E +D +    +  ES + A    EN E  +   EE  +                   V Q +   +MEIEE KDV M+E+T+ ES      S+AA
Subjt:  ETEIEEQKDVSMKDSAKPESSSAAAATLENQESSESYGEEETEPG-----------------VLQNLPLKSMEIEERKDVPMKESTKPES------SSAA

Query:  AAAEDQESPDSDGDQ-ETEPVVFRNLPPNFPTRFTTLIEDPESIRPRILIEKRLRQANVDLTRDRLPISAKKMKETFLVPDEETRLKSGDVMEVNVIEPE
         AA DQ+S +SDG++ ETE  +  N PPNFP  FT  + DP SIRPRIL+EK+LR+++VD  R+RL I AKK+KE FL+ DEE R+ +G+ MEV VIEP+
Subjt:  AAAEDQESPDSDGDQ-ETEPVVFRNLPPNFPTRFTTLIEDPESIRPRILIEKRLRQANVDLTRDRLPISAKKMKETFLVPDEETRLKSGDVMEVNVIEPE

Query:  GRAVSLLTLRRRR---RRRKTYELIDGWNYVVARNINALKAGELVRVWYFR-----VKGELWFALEVL-GDEQKDSEISKQLVDKWYGQKVFFP
           VS +TLRRRR    +  +Y L   W+ VVARN +ALK G  VRVWYF      V   L FA+EV    +  D E  K+L  KW+GQ +F P
Subjt:  GRAVSLLTLRRRR---RRRKTYELIDGWNYVVARNINALKAGELVRVWYFR-----VKGELWFALEVL-GDEQKDSEISKQLVDKWYGQKVFFP

A0A6J1KLZ8 trafficking protein particle complex subunit 11 isoform X11.9e-1989.09Show/hide
Query:  MENYPEELRTPPVRLISLVGCPELHPTISTHLLSEQPPIHTLAFPDISKISFLPP
        M+NYPEELRTPPVRLISLVGCP+LHPTIS HLLSEQPPIHTLAFPD+S ISFL P
Subjt:  MENYPEELRTPPVRLISLVGCPELHPTISTHLLSEQPPIHTLAFPDISKISFLPP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G65950.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1683, C-terminal (InterPro:IPR012880), Foie gras liver health family 1 (InterPro:IPR021773); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).2.6e-1362.5Show/hide
Query:  MENYPEELRTPPVRLISLVGCPELHPTISTHLLSEQPPIHTLAFPDISKISFLPPH
        ME YPEELRTPPV L++L G  ELH +I+ +L S+QPPI+ LAFPD S+IS L  H
Subjt:  MENYPEELRTPPVRLISLVGCPELHPTISTHLLSEQPPIHTLAFPDISKISFLPPH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAATTACCCAGAAGAGCTTCGAACTCCACCTGTGAGGCTGATTTCCCTCGTCGGATGCCCCGAGCTTCATCCCACCATCTCCACTCACCTCCTCTCCGAGCAGCC
TCCGATCCACACTCTCGCCTTCCCCGACATCTCCAAGATCTCCTTTCTCCCTCCCCACTCCTTCCCCCAATTTCAGGGGCAAATCCGGAATATTAAAAAGCTCCTCTGTA
ATTGCAATGATCAACACACAAATTTTCACTCAAACTTCTTGGAAATGGACGACGATACCGATTCCGGCTCTGAATCTTCCTTCGGCGATACAGACGAAGCCGGCGACGAC
ACCAACCTATCTTCGCACAATGATGACAGCGAAGGCTCCGATGTTGCCAGTGAGGAGGTGGTGGACATCATCAATGTAAGTGACGACGGAACGACGGCGGAAGGAGGAGG
AGGAGGAAGCGAGAAATCGGTGGAGATGGAAGAACAAGAAAGCAGACTTACCGAAACGGAGATCGAAGAACAAAAGGACGTTTCGATGAAAGATTCAGCAAAACCGGAAT
CCTCCTCGGCCGCCGCCGCCACCTTAGAAAATCAAGAATCCTCCGAATCGTACGGCGAGGAGGAAACAGAGCCTGGAGTCTTGCAAAACCTTCCGCTGAAATCGATGGAG
ATCGAAGAACGAAAGGACGTTCCGATGAAAGAATCGACAAAACCGGAATCCTCCTCGGCCGCCGCCGCCGCAGAAGATCAAGAATCCCCTGACTCGGACGGCGACCAAGA
AACAGAGCCTGTAGTCTTCCGAAACCTGCCGCCGAACTTCCCCACGCGATTCACGACACTGATCGAAGATCCGGAGTCGATTCGTCCTCGGATCTTGATCGAGAAGCGAT
TGCGGCAAGCGAACGTCGATTTGACTCGGGATCGATTGCCGATTTCGGCGAAGAAGATGAAGGAGACGTTCTTGGTGCCGGATGAAGAGACGAGGTTAAAATCCGGCGAC
GTTATGGAGGTGAACGTGATCGAGCCGGAGGGCAGAGCAGTGAGTTTGTTGACATTGCGACGGCGAAGGCGGCGGCGGAAGACGTACGAGCTCATCGACGGGTGGAATTA
TGTGGTGGCGCGTAACATTAACGCGCTGAAGGCGGGAGAACTTGTTAGGGTTTGGTATTTTCGCGTCAAGGGCGAGCTCTGGTTTGCGCTTGAAGTTCTTGGAGACGAGC
AGAAAGATTCTGAAATTTCGAAGCAACTGGTTGATAAATGGTACGGACAGAAAGTCTTTTTCCCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGAATTACCCAGAAGAGCTTCGAACTCCACCTGTGAGGCTGATTTCCCTCGTCGGATGCCCCGAGCTTCATCCCACCATCTCCACTCACCTCCTCTCCGAGCAGCC
TCCGATCCACACTCTCGCCTTCCCCGACATCTCCAAGATCTCCTTTCTCCCTCCCCACTCCTTCCCCCAATTTCAGGGGCAAATCCGGAATATTAAAAAGCTCCTCTGTA
ATTGCAATGATCAACACACAAATTTTCACTCAAACTTCTTGGAAATGGACGACGATACCGATTCCGGCTCTGAATCTTCCTTCGGCGATACAGACGAAGCCGGCGACGAC
ACCAACCTATCTTCGCACAATGATGACAGCGAAGGCTCCGATGTTGCCAGTGAGGAGGTGGTGGACATCATCAATGTAAGTGACGACGGAACGACGGCGGAAGGAGGAGG
AGGAGGAAGCGAGAAATCGGTGGAGATGGAAGAACAAGAAAGCAGACTTACCGAAACGGAGATCGAAGAACAAAAGGACGTTTCGATGAAAGATTCAGCAAAACCGGAAT
CCTCCTCGGCCGCCGCCGCCACCTTAGAAAATCAAGAATCCTCCGAATCGTACGGCGAGGAGGAAACAGAGCCTGGAGTCTTGCAAAACCTTCCGCTGAAATCGATGGAG
ATCGAAGAACGAAAGGACGTTCCGATGAAAGAATCGACAAAACCGGAATCCTCCTCGGCCGCCGCCGCCGCAGAAGATCAAGAATCCCCTGACTCGGACGGCGACCAAGA
AACAGAGCCTGTAGTCTTCCGAAACCTGCCGCCGAACTTCCCCACGCGATTCACGACACTGATCGAAGATCCGGAGTCGATTCGTCCTCGGATCTTGATCGAGAAGCGAT
TGCGGCAAGCGAACGTCGATTTGACTCGGGATCGATTGCCGATTTCGGCGAAGAAGATGAAGGAGACGTTCTTGGTGCCGGATGAAGAGACGAGGTTAAAATCCGGCGAC
GTTATGGAGGTGAACGTGATCGAGCCGGAGGGCAGAGCAGTGAGTTTGTTGACATTGCGACGGCGAAGGCGGCGGCGGAAGACGTACGAGCTCATCGACGGGTGGAATTA
TGTGGTGGCGCGTAACATTAACGCGCTGAAGGCGGGAGAACTTGTTAGGGTTTGGTATTTTCGCGTCAAGGGCGAGCTCTGGTTTGCGCTTGAAGTTCTTGGAGACGAGC
AGAAAGATTCTGAAATTTCGAAGCAACTGGTTGATAAATGGTACGGACAGAAAGTCTTTTTCCCTTAG
Protein sequenceShow/hide protein sequence
MENYPEELRTPPVRLISLVGCPELHPTISTHLLSEQPPIHTLAFPDISKISFLPPHSFPQFQGQIRNIKKLLCNCNDQHTNFHSNFLEMDDDTDSGSESSFGDTDEAGDD
TNLSSHNDDSEGSDVASEEVVDIINVSDDGTTAEGGGGGSEKSVEMEEQESRLTETEIEEQKDVSMKDSAKPESSSAAAATLENQESSESYGEEETEPGVLQNLPLKSME
IEERKDVPMKESTKPESSSAAAAAEDQESPDSDGDQETEPVVFRNLPPNFPTRFTTLIEDPESIRPRILIEKRLRQANVDLTRDRLPISAKKMKETFLVPDEETRLKSGD
VMEVNVIEPEGRAVSLLTLRRRRRRRKTYELIDGWNYVVARNINALKAGELVRVWYFRVKGELWFALEVLGDEQKDSEISKQLVDKWYGQKVFFP