CuGenDBv2

Gene ID	Spg013456
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RanBP2-type domain-containing protein
Genome location	scaffold1:5491902..5494234
RNA-Seq Expression	Spg013456
Synteny	Spg013456
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0025683.1 putative RNA-binding protein C17H9.04c [Cucumis melo var. makuwa]

8.2e-101

65.99

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Query:  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGNGTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISY
        GCTNNNYASREKCKKCGQPKE+AAMPA+AIPGASFPTYSHYFARTQGGLD+KMNLGLIGNGTSQ LHPLSSNWS+GGADKYGIHAAPTFPLGGNNSAISY
Subjt:  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGNGTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISY

Query:  MSSPNQILSVPKGWRSGDWICNCGFHNYSSRAQVGFPPSHTES------AKNAMLHH---------KTNEQQQSYPGFEQMIGSSSDPNVGLYNSYTHES
        MS  NQ+LSVPKGWR+GDW+CNCGFHNYSSRAQ     +  ++      A   ++H          + NEQQQSYPG EQM+G+SSDPNVGLYN Y HES
Subjt:  MSSPNQILSVPKGWRSGDWICNCGFHNYSSRAQVGFPPSHTES------AKNAMLHH---------KTNEQQQSYPGFEQMIGSSSDPNVGLYNSYTHES

Query:  SGVAPNLEMQMQFPQQATAPTLLGKGG------------------ATEIGCAQIAII----------IIMHLAYNVTGARLKEIHFLCHSVPSE
        S VAPNLEM +QFP QATAPTLLGKG                   A+ + C   A            + + LA  + GARLKEIHFLC SVPS+
Subjt:  SGVAPNLEMQMQFPQQATAPTLLGKGG------------------ATEIGCAQIAII----------IIMHLAYNVTGARLKEIHFLCHSVPSE

XP_004134868.1 uncharacterized RNA-binding protein C17H9.04c [Cucumis sativus]

2.7e-96

77.88

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Query:  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGNGTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISY
        GCTNNNYASREKCKKCGQPKE+AAMPA+AIPGASFPTYSHYFARTQGGLD+KMNLGLIGNGTSQ LHPLSSNWSLGGADKYGIHAAPTFPL GNNSAISY
Subjt:  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGNGTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISY

Query:  MSSPNQILSVPKGWRSGDWICNCGFHNYSSRAQVGFPPSHTES------AKNAMLHH---------KTNEQQQSYPGFEQMIGSSSDPNVGLYNSYTHES
        MS  NQ+LSVPKGWR+GDW+CNCGFHNYSSRAQ     +  ++      A   ++H          + NEQQQSYPGFEQM+G+ SDPNVGLYNSY HES
Subjt:  MSSPNQILSVPKGWRSGDWICNCGFHNYSSRAQVGFPPSHTES------AKNAMLHH---------KTNEQQQSYPGFEQMIGSSSDPNVGLYNSYTHES

Query:  SGVAPNLEMQMQFPQQATAPTLLGKG
        S VAPNLEM MQFP QATAPTLLGKG
Subjt:  SGVAPNLEMQMQFPQQATAPTLLGKG

XP_008440810.1 PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Cucumis melo]

1.8e-95

76.99

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Query:  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGNGTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISY
        GCTNNNYASREKCKKCGQPKE+AAMPA+AIPGASFPTYSHYFARTQGGLD+KMNLGLIGNGTSQ LHPLSSNWS+GGADKYGIHAAPTFPLGGNNSAISY
Subjt:  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGNGTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISY

Query:  MSSPNQILSVPKGWRSGDWICNCGFHNYSSRAQVGFPPSHTES------AKNAMLHH---------KTNEQQQSYPGFEQMIGSSSDPNVGLYNSYTHES
        MS  NQ+LSVPKGWR+GDW+CNCGFHNYSSRAQ     +  ++      A   ++H          + NEQQQSYPG EQM+G+SSDPNVGLYN Y HES
Subjt:  MSSPNQILSVPKGWRSGDWICNCGFHNYSSRAQVGFPPSHTES------AKNAMLHH---------KTNEQQQSYPGFEQMIGSSSDPNVGLYNSYTHES

Query:  SGVAPNLEMQMQFPQQATAPTLLGKG
        S VAPNLEM +QFP QATAPTLLGKG
Subjt:  SGVAPNLEMQMQFPQQATAPTLLGKG

XP_022132998.1 uncharacterized RNA-binding protein C17H9.04c [Momordica charantia]

5.2e-95

78.32

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Query:  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGNGTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISY
        GCTNNNYASREKCKKCGQPKE+AAMPAIAIPGASFPTYSHYFARTQGGL+TKMNLGLIGNGTSQQ HPLSSNW LGG DKYGIHAA TFPLGGNNSAISY
Subjt:  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGNGTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISY

Query:  MSSPNQILSVPKGWRSGDWICNCGFHNYSSRAQVGFPPSHTES------AKNAMLH---------HKTNEQQQSYPGFEQMIGSSSDPNVGLYNSYTHES
        MSS NQIL VPKGWR+GDWICNCGFHNYSSRAQ     +  ++      A   ++H          +TNEQQQSYPGFEQ++ SSSD NVGLYNSY+HES
Subjt:  MSSPNQILSVPKGWRSGDWICNCGFHNYSSRAQVGFPPSHTES------AKNAMLH---------HKTNEQQQSYPGFEQMIGSSSDPNVGLYNSYTHES

Query:  SGVAPNLEMQMQFPQQATAPTLLGKG
        SGVAPNLEM M FPQQ+TAPTLLGKG
Subjt:  SGVAPNLEMQMQFPQQATAPTLLGKG

XP_038883349.1 uncharacterized RNA-binding protein C17H9.04c [Benincasa hispida]

5.0e-98

79.65

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Query:  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGNGTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISY
        GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLD+K+NLGLIGNGTSQ LHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISY
Subjt:  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGNGTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISY

Query:  MSSPNQILSVPKGWRSGDWICNCGFHNYSSRAQVGFPPSHTES------AKNAMLHH---------KTNEQQQSYPGFEQMIGSSSDPNVGLYNSYTHES
        MS  NQ+LSVPKGWR+GDW+CNCGFHNYSSRAQ     +  ++      A   ++HH         + NEQQQSYPGFEQM+GSSSDPNVGLYNSY HES
Subjt:  MSSPNQILSVPKGWRSGDWICNCGFHNYSSRAQVGFPPSHTES------AKNAMLHH---------KTNEQQQSYPGFEQMIGSSSDPNVGLYNSYTHES

Query:  SGVAPNLEMQMQFPQQATAPTLLGKG
        S VAPNLEM MQFP QATAP LLGKG
Subjt:  SGVAPNLEMQMQFPQQATAPTLLGKG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KGM9 Uncharacterized protein

1.3e-96

77.88

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Query:  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGNGTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISY
        GCTNNNYASREKCKKCGQPKE+AAMPA+AIPGASFPTYSHYFARTQGGLD+KMNLGLIGNGTSQ LHPLSSNWSLGGADKYGIHAAPTFPL GNNSAISY
Subjt:  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGNGTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISY

Query:  MSSPNQILSVPKGWRSGDWICNCGFHNYSSRAQVGFPPSHTES------AKNAMLHH---------KTNEQQQSYPGFEQMIGSSSDPNVGLYNSYTHES
        MS  NQ+LSVPKGWR+GDW+CNCGFHNYSSRAQ     +  ++      A   ++H          + NEQQQSYPGFEQM+G+ SDPNVGLYNSY HES
Subjt:  MSSPNQILSVPKGWRSGDWICNCGFHNYSSRAQVGFPPSHTES------AKNAMLHH---------KTNEQQQSYPGFEQMIGSSSDPNVGLYNSYTHES

Query:  SGVAPNLEMQMQFPQQATAPTLLGKG
        S VAPNLEM MQFP QATAPTLLGKG
Subjt:  SGVAPNLEMQMQFPQQATAPTLLGKG

A0A1S3B1J3 uncharacterized RNA-binding protein C17H9.04c

8.6e-96

76.99

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Query:  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGNGTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISY
        GCTNNNYASREKCKKCGQPKE+AAMPA+AIPGASFPTYSHYFARTQGGLD+KMNLGLIGNGTSQ LHPLSSNWS+GGADKYGIHAAPTFPLGGNNSAISY
Subjt:  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGNGTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISY

Query:  MSSPNQILSVPKGWRSGDWICNCGFHNYSSRAQVGFPPSHTES------AKNAMLHH---------KTNEQQQSYPGFEQMIGSSSDPNVGLYNSYTHES
        MS  NQ+LSVPKGWR+GDW+CNCGFHNYSSRAQ     +  ++      A   ++H          + NEQQQSYPG EQM+G+SSDPNVGLYN Y HES
Subjt:  MSSPNQILSVPKGWRSGDWICNCGFHNYSSRAQVGFPPSHTES------AKNAMLHH---------KTNEQQQSYPGFEQMIGSSSDPNVGLYNSYTHES

Query:  SGVAPNLEMQMQFPQQATAPTLLGKG
        S VAPNLEM +QFP QATAPTLLGKG
Subjt:  SGVAPNLEMQMQFPQQATAPTLLGKG

A0A5A7SLZ2 Putative RNA-binding protein C17H9.04c

4.0e-101

65.99

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Query:  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGNGTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISY
        GCTNNNYASREKCKKCGQPKE+AAMPA+AIPGASFPTYSHYFARTQGGLD+KMNLGLIGNGTSQ LHPLSSNWS+GGADKYGIHAAPTFPLGGNNSAISY
Subjt:  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGNGTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISY

Query:  MSSPNQILSVPKGWRSGDWICNCGFHNYSSRAQVGFPPSHTES------AKNAMLHH---------KTNEQQQSYPGFEQMIGSSSDPNVGLYNSYTHES
        MS  NQ+LSVPKGWR+GDW+CNCGFHNYSSRAQ     +  ++      A   ++H          + NEQQQSYPG EQM+G+SSDPNVGLYN Y HES
Subjt:  MSSPNQILSVPKGWRSGDWICNCGFHNYSSRAQVGFPPSHTES------AKNAMLHH---------KTNEQQQSYPGFEQMIGSSSDPNVGLYNSYTHES

Query:  SGVAPNLEMQMQFPQQATAPTLLGKGG------------------ATEIGCAQIAII----------IIMHLAYNVTGARLKEIHFLCHSVPSE
        S VAPNLEM +QFP QATAPTLLGKG                   A+ + C   A            + + LA  + GARLKEIHFLC SVPS+
Subjt:  SGVAPNLEMQMQFPQQATAPTLLGKGG------------------ATEIGCAQIAII----------IIMHLAYNVTGARLKEIHFLCHSVPSE

A0A6J1BXT0 uncharacterized RNA-binding protein C17H9.04c

2.5e-95

78.32

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Query:  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGNGTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISY
        GCTNNNYASREKCKKCGQPKE+AAMPAIAIPGASFPTYSHYFARTQGGL+TKMNLGLIGNGTSQQ HPLSSNW LGG DKYGIHAA TFPLGGNNSAISY
Subjt:  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGNGTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISY

Query:  MSSPNQILSVPKGWRSGDWICNCGFHNYSSRAQVGFPPSHTES------AKNAMLH---------HKTNEQQQSYPGFEQMIGSSSDPNVGLYNSYTHES
        MSS NQIL VPKGWR+GDWICNCGFHNYSSRAQ     +  ++      A   ++H          +TNEQQQSYPGFEQ++ SSSD NVGLYNSY+HES
Subjt:  MSSPNQILSVPKGWRSGDWICNCGFHNYSSRAQVGFPPSHTES------AKNAMLH---------HKTNEQQQSYPGFEQMIGSSSDPNVGLYNSYTHES

Query:  SGVAPNLEMQMQFPQQATAPTLLGKG
        SGVAPNLEM M FPQQ+TAPTLLGKG
Subjt:  SGVAPNLEMQMQFPQQATAPTLLGKG

A0A6J1EFP4 uncharacterized RNA-binding protein C17H9.04c

9.5e-95

79.3

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Query:  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGNGTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISY
        GCTNNNYASREKCKKCGQPKEIAAMPAIAI GASFPTYSHYFARTQGGLDTKMNLGL  NG  QQLHPLSSNWSLGGADKY IHA+P FPLGGNNSAISY
Subjt:  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGNGTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISY

Query:  MSSPNQILSVPKGWRSGDWICNCGFHNYSSRAQVGFPPSHTES------AKNAMLHH---------KTNEQQQSYPGFEQMIGSSSDPNVG-LYNSYTHE
        MSSPNQILSVPKGWR+GDWICNCGFHNYSSRAQ     +  ++      A   ++H          +TNEQQQS+PGFEQM+GSSSDPNVG LYNSY HE
Subjt:  MSSPNQILSVPKGWRSGDWICNCGFHNYSSRAQVGFPPSHTES------AKNAMLHH---------KTNEQQQSYPGFEQMIGSSSDPNVG-LYNSYTHE

Query:  SSGVAPNLEMQMQFPQQATAPTLLGKG
        SSG+APNLEM MQFPQQATAPTLLGKG
Subjt:  SSGVAPNLEMQMQFPQQATAPTLLGKG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G17975.1 zinc finger (Ran-binding) family protein

6.4e-27

36.41

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Query:  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGNGTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISY
        GCTNNNYASREKCKKCGQ KE+AA+ A+AIPGAS  T+ HYF R     D   +L    N T+Q                                    
Subjt:  GCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGNGTSQQLHPLSSNWSLGGADKYGIHAAPTFPLGGNNSAISY

Query:  MSSPNQILSVPKGWRSGDWICNCGFHNYSSRAQ------VGFPPSHTESAKNAMLHHKTNEQQQSYPGFEQMIGSSSDPNVGLYNSYTHESSGVAPNLEM
                SV K WRSGDWIC CGFHNYSSR Q      +      T+   +  L H+ + ++ +  G+  M   S+     +Y S+   S G   N ++
Subjt:  MSSPNQILSVPKGWRSGDWICNCGFHNYSSRAQ------VGFPPSHTESAKNAMLHHKTNEQQQSYPGFEQMIGSSSDPNVGLYNSYTHESSGVAPNLEM

Query:  QMQFPQQATAPTLLGKG
         + F QQ + P LLG G
Subjt:  QMQFPQQATAPTLLGKG

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTGTATTTGGTGTGGATGGACTGCTTGGTGTGCGTATACCTGGCTTGCTTGTGGGTTGGGTTTGTCTGGCTCTGGTGCAATAGGTTGCACTAACAACAATTATGCATC
AAGAGAGAAGTGCAAAAAGTGTGGACAACCAAAGGAGATAGCAGCAATGCCAGCAATTGCAATCCCTGGAGCTTCTTTTCCAACTTATTCACACTATTTTGCCAGGACCC
AAGGAGGATTGGATACAAAGATGAATCTTGGATTAATAGGAAATGGCACTTCACAGCAACTGCATCCTCTGAGCTCCAATTGGTCCCTGGGAGGTGCTGATAAGTATGGA
ATTCATGCAGCTCCAACATTTCCTTTGGGTGGAAATAATTCTGCCATCTCGTATATGAGTTCTCCTAATCAGATCCTTTCAGTTCCGAAGGGTTGGCGGAGTGGTGACTG
GATATGCAACTGTGGTTTCCATAATTACTCTTCACGTGCGCAGGTGGGATTTCCACCTTCTCATACTGAGTCTGCAAAAAATGCAATGCTTCACCACAAGACAAATGAGC
AACAACAATCTTACCCAGGTTTTGAGCAGATGATAGGTTCCAGTAGTGACCCAAATGTGGGACTATATAATTCTTATACCCACGAAAGTTCTGGTGTAGCTCCAAATTTG
GAAATGCAAATGCAGTTTCCCCAACAAGCAACTGCACCAACGCTCCTAGGGAAAGGTGGCGCAACGGAGATTGGATGTGCACAAATTGCAATAATCATAATTATGCATCT
CGCTTACAATGTAACAGGTGCAAGACTCAAAGAGATTCACTTTCTCTGCCACTCAGTGCCATCTGAGCAGATTTATACAGACTTCGGATGGCTGTTATTCTCTTGCCGCA
ATGTTCTTTCATAG

mRNA sequence

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Protein sequence

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MCIWCGWTAWCAYTWLACGLGLSGSGAIGCTNNNYASREKCKKCGQPKEIAAMPAIAIPGASFPTYSHYFARTQGGLDTKMNLGLIGNGTSQQLHPLSSNWSLGGADKYG
IHAAPTFPLGGNNSAISYMSSPNQILSVPKGWRSGDWICNCGFHNYSSRAQVGFPPSHTESAKNAMLHHKTNEQQQSYPGFEQMIGSSSDPNVGLYNSYTHESSGVAPNL
EMQMQFPQQATAPTLLGKGGATEIGCAQIAIIIIMHLAYNVTGARLKEIHFLCHSVPSEQIYTDFGWLLFSCRNVLS

Spg013456 (gene) of Sponge gourd (cylindrica) v1 genome