; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg013477 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg013477
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionE3 ubiquitin-protein ligase RHA2B-like
Genome locationscaffold1:6476110..6476839
RNA-Seq ExpressionSpg013477
SyntenySpg013477
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036272.1 putative E3 ubiquitin-protein ligase RHA2B [Cucumis melo var. makuwa]1.1e-7996.15Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIE+KNPTIRFSNK+T S ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHARS
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH  S
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHARS

XP_008440648.1 PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis melo]1.4e-7993.21Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIE+KNPTIRFSNK+T S ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHARSSKIVYV
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH   S+   V
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHARSSKIVYV

XP_022132528.1 E3 ubiquitin-protein ligase RHA2B-like [Momordica charantia]7.0e-7993.59Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRP ADKRVITT Q+ KLIEE+NPTIRFSNK+TSSPADQCAVCLSEFEEG+KVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHARS
        CLDNWLKLCFATCPLCRSKVLPDD+VAGYHRLRDRVEYDGSDEELIFLLSALH  S
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHARS

XP_022963436.1 E3 ubiquitin-protein ligase RHA2B-like isoform X1 [Cucurbita moschata]1.1e-7995.51Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLL+LE VIL+RTIFGLRPN DKRVI TAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHARS
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH  S
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHARS

XP_038883588.1 E3 ubiquitin-protein ligase RHA2B-like [Benincasa hispida]6.4e-8093.21Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRV+TTAQFLKLIEEKNPTIRFSNK+TSS ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHARSSKIVYV
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH      +Y+
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHARSSKIVYV

TrEMBL top hitse value%identityAlignment
A0A0A0KM08 RING-type domain-containing protein3.4e-7994.87Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPN+DKRVITTAQF KLIE+KNPTIRFSNK+T S ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHARS
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH  S
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHARS

A0A1S3B160 probable E3 ubiquitin-protein ligase RHA2B6.9e-8093.21Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIE+KNPTIRFSNK+T S ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHARSSKIVYV
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH   S+   V
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHARSSKIVYV

A0A5A7SYH1 Putative E3 ubiquitin-protein ligase RHA2B5.3e-8096.15Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIE+KNPTIRFSNK+T S ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHARS
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH  S
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHARS

A0A6J1BWI1 E3 ubiquitin-protein ligase RHA2B-like3.4e-7993.59Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRP ADKRVITT Q+ KLIEE+NPTIRFSNK+TSSPADQCAVCLSEFEEG+KVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHARS
        CLDNWLKLCFATCPLCRSKVLPDD+VAGYHRLRDRVEYDGSDEELIFLLSALH  S
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHARS

A0A6J1HG49 E3 ubiquitin-protein ligase RHA2B-like isoform X15.3e-8095.51Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLL+LE VIL+RTIFGLRPN DKRVI TAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHARS
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALH  S
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHARS

SwissProt top hitse value%identityAlignment
P0CH30 E3 ubiquitin-protein ligase RING11.1e-1040.58Show/hide
Query:  EKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD
        E  P +  +    +S  +QCAVC+ +FEEG + +++ C H +HKDCL  WL+L   +CP+CR ++  DD
Subjt:  EKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD

Q8LPN7 E3 ubiquitin-protein ligase RING1-like5.9e-1243.94Show/hide
Query:  PTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD
        PT++ +  +  S  +QCAVC+ EFE+G  V+++ C H FH+DCL  WL+L   +CP+CR ++  DD
Subjt:  PTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD

Q9XF92 Brassinosteroid-responsive RING protein 16.5e-1145.45Show/hide
Query:  LIEEKNPTIRFSNKITSSPAD---QCAVCLSEFEEGEKVRKLQ-CNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDI
        LI E  P I+F  ++T+S  D    CAVCL EFE  +++R L+ C H FH+ CLD W+     TCPLCR+  +PD++
Subjt:  LIEEKNPTIRFSNKITSSPAD---QCAVCLSEFEEGEKVRKLQ-CNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDI

Q9ZT50 E3 ubiquitin-protein ligase RHA2A2.4e-1356.14Show/hide
Query:  CAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYHR
        C VCLS+ +EGE+VRKL+C H FHK CL+ WL     TCPLCRS ++ DD V+   R
Subjt:  CAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYHR

Q9ZU51 E3 ubiquitin-protein ligase RHA2B1.7e-1440.59Show/hide
Query:  LLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVL
        LL  F   +R++  L P++   V+ T+    L ++ N    FS + + + A  C VCLS+ + GE+VRKL C H FHK CL+ WL+     CPLCRS +L
Subjt:  LLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVL

Query:  P
        P
Subjt:  P

Arabidopsis top hitse value%identityAlignment
AT1G15100.1 RING-H2 finger A2A1.7e-1456.14Show/hide
Query:  CAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYHR
        C VCLS+ +EGE+VRKL+C H FHK CL+ WL     TCPLCRS ++ DD V+   R
Subjt:  CAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYHR

AT2G01150.1 RING-H2 finger protein 2B1.2e-1540.59Show/hide
Query:  LLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVL
        LL  F   +R++  L P++   V+ T+    L ++ N    FS + + + A  C VCLS+ + GE+VRKL C H FHK CL+ WL+     CPLCRS +L
Subjt:  LLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVL

Query:  P
        P
Subjt:  P

AT3G19950.1 RING/U-box superfamily protein4.2e-1343.94Show/hide
Query:  PTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD
        PT++ +  +  S  +QCAVC+ EFE+G  V+++ C H FH+DCL  WL+L   +CP+CR ++  DD
Subjt:  PTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD

AT3G62690.1 AtL59.4e-1348.53Show/hide
Query:  EKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKL-QCNHTFHKDCLDNWLKLCFATCPLCRSKVLP
        EK P   +S K   SP ++C+VCLSEFEE ++ R L +C H FH DC+D W +   ++CPLCR+ V P
Subjt:  EKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKL-QCNHTFHKDCLDNWLKLCFATCPLCRSKVLP

AT5G45290.1 RING/U-box superfamily protein1.2e-1241.43Show/hide
Query:  IRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYH
        I+   K  S    QC +CL E+EE + +R L C+H FHK C+D WLK     CPLCR  +   D  +  H
Subjt:  IRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTTCATACAATGACCGCCGTCTTCTTCACGCTTTTACTTCTCGAATTCGTTATTCTCATTCGCACGATCTTCGGATTGAG
GCCTAACGCCGACAAGCGCGTAATCACGACGGCGCAGTTTTTGAAACTGATAGAGGAGAAGAATCCGACGATTCGATTCTCCAATAAGATCACCTCAAGTCCCGCCGATC
AGTGCGCCGTTTGCCTCTCGGAATTCGAGGAAGGGGAAAAGGTACGGAAATTGCAATGCAACCACACTTTTCACAAGGATTGCCTCGATAATTGGTTGAAACTCTGTTTC
GCTACCTGTCCGCTTTGCCGGAGTAAGGTCTTGCCGGACGATATCGTCGCCGGTTACCACAGGCTGCGGGACCGTGTAGAGTACGACGGCAGCGACGAGGAGCTCATCTT
TTTGTTATCGGCATTACATGCTAGATCGAGTAAAATCGTGTATGTTTCTGTTTACCTGCAAGGCTGCAATTACGCACGCCAACTGTTTGATGCTTTCTTTGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGCTCTCTCCGAGTTCTTCTCCCACCTTCATACAATGACCGCCGTCTTCTTCACGCTTTTACTTCTCGAATTCGTTATTCTCATTCGCACGATCTTCGGATTGAG
GCCTAACGCCGACAAGCGCGTAATCACGACGGCGCAGTTTTTGAAACTGATAGAGGAGAAGAATCCGACGATTCGATTCTCCAATAAGATCACCTCAAGTCCCGCCGATC
AGTGCGCCGTTTGCCTCTCGGAATTCGAGGAAGGGGAAAAGGTACGGAAATTGCAATGCAACCACACTTTTCACAAGGATTGCCTCGATAATTGGTTGAAACTCTGTTTC
GCTACCTGTCCGCTTTGCCGGAGTAAGGTCTTGCCGGACGATATCGTCGCCGGTTACCACAGGCTGCGGGACCGTGTAGAGTACGACGGCAGCGACGAGGAGCTCATCTT
TTTGTTATCGGCATTACATGCTAGATCGAGTAAAATCGTGTATGTTTCTGTTTACCTGCAAGGCTGCAATTACGCACGCCAACTGTTTGATGCTTTCTTTGCATGA
Protein sequenceShow/hide protein sequence
MGALSEFFSHLHTMTAVFFTLLLLEFVILIRTIFGLRPNADKRVITTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCF
ATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHARSSKIVYVSVYLQGCNYARQLFDAFFA