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Spg013531 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg013531
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description40S ribosomal protein S3
Genome locationscaffold1:19020587..19022346
RNA-Seq ExpressionSpg013531
SyntenySpg013531
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR004044 - K Homology domain, type 2
IPR009019 - K homology domain superfamily, prokaryotic type
IPR015946 - K homology domain-like, alpha/beta


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4365839.1 hypothetical protein G4B88_012904 [Cannabis sativa]7.6e-3156.6Show/hide
Query:  SVVVRV-GNIKVPMKTTTHEAASEVSNYCADDVISSYSLTPLTEIVSAYFRKVEKYNQLESSFCSQLTLLVEDGYSDVEVRVTPMLTEIIIRATRTQNVL
        S+VVR+   +++P+ ++ H   S+   + AD V        L E+++                      L EDGYS VEVRVTPM TEIIIRATRTQNVL
Subjt:  SVVVRV-GNIKVPMKTTTHEAASEVSNYCADDVISSYSLTPLTEIVSAYFRKVEKYNQLESSFCSQLTLLVEDGYSDVEVRVTPMLTEIIIRATRTQNVL

Query:  GEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM
        GEKGRRIRELTSVVQKRFKFPENSVELY EKVNNR  CAIAQAESLRY    L GGLA+
Subjt:  GEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM

PQM40724.1 40S ribosomal protein S3-3 [Prunus yedoensis var. nudiflora]5.8e-3186.17Show/hide
Query:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRY--LVALLCGGLAMVF
        L EDGYS VEVRVTP+ TEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY EKVNNR  CAIAQAESLRY  L  LL GG AMVF
Subjt:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRY--LVALLCGGLAMVF

RXI06134.1 hypothetical protein DVH24_018176 [Malus domestica]4.9e-3086.67Show/hide
Query:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM
        L EDGYS VEVRVTPM TEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY EKVNNR  CAIAQAESLRY    L GGLA+
Subjt:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM

XP_022946744.1 40S ribosomal protein S3-2-like [Cucurbita moschata]4.9e-3086.67Show/hide
Query:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM
        L EDGYS VEVRVTPM TEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY EKVNNR  CAIAQAESLRY    L GGLA+
Subjt:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM

XP_038890738.1 40S ribosomal protein S3-2 [Benincasa hispida]4.9e-3086.67Show/hide
Query:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM
        L EDGYS VEVRVTPM TEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY EKVNNR  CAIAQAESLRY    L GGLA+
Subjt:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM

TrEMBL top hitse value%identityAlignment
A0A1U8PFX7 40S ribosomal protein S3-2-like2.4e-3086.67Show/hide
Query:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM
        L EDGYS VEVRVTPM TEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY EKVNNR  CAIAQAESLRY    L GGLA+
Subjt:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM

A0A314UW15 40S ribosomal protein S3-32.8e-3186.17Show/hide
Query:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRY--LVALLCGGLAMVF
        L EDGYS VEVRVTP+ TEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY EKVNNR  CAIAQAESLRY  L  LL GG AMVF
Subjt:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRY--LVALLCGGLAMVF

A0A5D2CG91 KH type-2 domain-containing protein2.4e-3086.67Show/hide
Query:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM
        L EDGYS VEVRVTPM TEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY EKVNNR  CAIAQAESLRY    L GGLA+
Subjt:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM

A0A6J1KD29 40S ribosomal protein S3-3 isoform X12.4e-3086.67Show/hide
Query:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM
        L EDGYS VEVRVTPM TEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY EKVNNR  CAIAQAESLRY    L GGLA+
Subjt:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM

A0A7J6F7K8 Uncharacterized protein3.7e-3156.6Show/hide
Query:  SVVVRV-GNIKVPMKTTTHEAASEVSNYCADDVISSYSLTPLTEIVSAYFRKVEKYNQLESSFCSQLTLLVEDGYSDVEVRVTPMLTEIIIRATRTQNVL
        S+VVR+   +++P+ ++ H   S+   + AD V        L E+++                      L EDGYS VEVRVTPM TEIIIRATRTQNVL
Subjt:  SVVVRV-GNIKVPMKTTTHEAASEVSNYCADDVISSYSLTPLTEIVSAYFRKVEKYNQLESSFCSQLTLLVEDGYSDVEVRVTPMLTEIIIRATRTQNVL

Query:  GEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM
        GEKGRRIRELTSVVQKRFKFPENSVELY EKVNNR  CAIAQAESLRY    L GGLA+
Subjt:  GEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM

SwissProt top hitse value%identityAlignment
P02350 40S ribosomal protein S3-A6.3e-2878.89Show/hide
Query:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM
        L EDGYS VEVRVTP  TEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELY EKV  R  CAIAQAESLRY    L GGLA+
Subjt:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM

P47835 40S ribosomal protein S3-B6.3e-2878.89Show/hide
Query:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM
        L EDGYS VEVRVTP  TEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELY EKV  R  CAIAQAESLRY    L GGLA+
Subjt:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM

Q9FJA6 40S ribosomal protein S3-31.0e-3082.22Show/hide
Query:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM
        L EDGYS VEVRVTPM TEIIIRATRTQNVLGEKGRRIRELTS+VQKRFKFP++SVELY EKV NR  CAIAQAESLRY    L GGLA+
Subjt:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM

Q9M339 40S ribosomal protein S3-23.5e-3183.33Show/hide
Query:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM
        L EDGYS VEVRVTPM TEIIIRATRTQNVLGEKGRRIRELTS+VQKRFKFP +SVELY EKVNNR  CAIAQAESLRY    L GGLA+
Subjt:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM

Q9SIP7 40S ribosomal protein S3-13.5e-3183.33Show/hide
Query:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM
        L EDGYS VEVRVTPM TEIIIRATRTQNVLGEKGRRIRELTS+VQKRFKFP +SVELY EKVNNR  CAIAQAESLRY    L GGLA+
Subjt:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM

Arabidopsis top hitse value%identityAlignment
AT2G31610.1 Ribosomal protein S3 family protein2.5e-3283.33Show/hide
Query:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM
        L EDGYS VEVRVTPM TEIIIRATRTQNVLGEKGRRIRELTS+VQKRFKFP +SVELY EKVNNR  CAIAQAESLRY    L GGLA+
Subjt:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM

AT3G53870.1 Ribosomal protein S3 family protein2.5e-3283.33Show/hide
Query:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM
        L EDGYS VEVRVTPM TEIIIRATRTQNVLGEKGRRIRELTS+VQKRFKFP +SVELY EKVNNR  CAIAQAESLRY    L GGLA+
Subjt:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM

AT5G35530.1 Ribosomal protein S3 family protein7.3e-3282.22Show/hide
Query:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM
        L EDGYS VEVRVTPM TEIIIRATRTQNVLGEKGRRIRELTS+VQKRFKFP++SVELY EKV NR  CAIAQAESLRY    L GGLA+
Subjt:  LVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGTCGAATTTTCTAGCAAAGGTGGGGTTAAATACTTTGATGATTTTGAAGCCTGTATACATATTCACAGGGGTAAATATGTGTCATGGTATGCGGGTCTTCAAGC
TAGAAATATAGGCGAGTGGGAAATTTTCGTTTTGGCTTTTTTCTTTCTTCATAAGCATTCAATTGTGCTTCTTATCTTCATGGTGTGGGTTATCAAAGCTTATAAGCCTT
GTCAATTTAGTCATCAATTTGGATTTTATCAAGATGTATCGAATAACTTGGTCAACAATGGAAATTATCTTGAGGAAGACATACAAAAATTGGTGGTTAGTGCTTCTCCT
CTTCCCTCTAAGCCTAAGTTTCCTAAAATGGTTGATGATGATAATGGAGGTAAAAGGAATTGCATGTTTGAACCTGGGGAGTTCCTCTCTGAGGATAATGAGTCGCCTTT
AAATGAACTCATTATAGAAGCTGAAGGACATCATAATTGTTCTTCGATGAGTCCAAACATTTTTTATTCAGTGGTTGTGCGTGTTGGCAATATCAAGGTGCCAATGAAGA
CGACAACACATGAAGCTGCTTCTGAAGTCTCCAATTATTGTGCTGACGATGTGATTTCCAGCTATAGCCTAACTCCTCTTACAGAAATTGTAAGTGCGTATTTCAGGAAA
GTGGAGAAGTATAATCAGCTAGAGTCGTCGTTTTGCTCTCAATTGACTTTATTGGTCGAGGATGGGTACTCCGATGTCGAGGTTAGAGTCACTCCTATGCTAACTGAGAT
CATCATCCGAGCCACCCGCACCCAAAACGTTCTCGGAGAAAAGGGTAGGAGGATTAGGGAACTTACCTCCGTTGTGCAGAAGCGGTTCAAGTTTCCGGAGAATAGTGTTG
AACTTTATGTCGAGAAAGTTAACAATAGACGCTTTTGTGCCATTGCCCAAGCCGAGTCTCTTCGTTACTTGGTGGCCTTGTTGTGCGGAGGGCTTGCTATGGTGTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGGTCGAATTTTCTAGCAAAGGTGGGGTTAAATACTTTGATGATTTTGAAGCCTGTATACATATTCACAGGGGTAAATATGTGTCATGGTATGCGGGTCTTCAAGC
TAGAAATATAGGCGAGTGGGAAATTTTCGTTTTGGCTTTTTTCTTTCTTCATAAGCATTCAATTGTGCTTCTTATCTTCATGGTGTGGGTTATCAAAGCTTATAAGCCTT
GTCAATTTAGTCATCAATTTGGATTTTATCAAGATGTATCGAATAACTTGGTCAACAATGGAAATTATCTTGAGGAAGACATACAAAAATTGGTGGTTAGTGCTTCTCCT
CTTCCCTCTAAGCCTAAGTTTCCTAAAATGGTTGATGATGATAATGGAGGTAAAAGGAATTGCATGTTTGAACCTGGGGAGTTCCTCTCTGAGGATAATGAGTCGCCTTT
AAATGAACTCATTATAGAAGCTGAAGGACATCATAATTGTTCTTCGATGAGTCCAAACATTTTTTATTCAGTGGTTGTGCGTGTTGGCAATATCAAGGTGCCAATGAAGA
CGACAACACATGAAGCTGCTTCTGAAGTCTCCAATTATTGTGCTGACGATGTGATTTCCAGCTATAGCCTAACTCCTCTTACAGAAATTGTAAGTGCGTATTTCAGGAAA
GTGGAGAAGTATAATCAGCTAGAGTCGTCGTTTTGCTCTCAATTGACTTTATTGGTCGAGGATGGGTACTCCGATGTCGAGGTTAGAGTCACTCCTATGCTAACTGAGAT
CATCATCCGAGCCACCCGCACCCAAAACGTTCTCGGAGAAAAGGGTAGGAGGATTAGGGAACTTACCTCCGTTGTGCAGAAGCGGTTCAAGTTTCCGGAGAATAGTGTTG
AACTTTATGTCGAGAAAGTTAACAATAGACGCTTTTGTGCCATTGCCCAAGCCGAGTCTCTTCGTTACTTGGTGGCCTTGTTGTGCGGAGGGCTTGCTATGGTGTTCTGA
Protein sequenceShow/hide protein sequence
MMVEFSSKGGVKYFDDFEACIHIHRGKYVSWYAGLQARNIGEWEIFVLAFFFLHKHSIVLLIFMVWVIKAYKPCQFSHQFGFYQDVSNNLVNNGNYLEEDIQKLVVSASP
LPSKPKFPKMVDDDNGGKRNCMFEPGEFLSEDNESPLNELIIEAEGHHNCSSMSPNIFYSVVVRVGNIKVPMKTTTHEAASEVSNYCADDVISSYSLTPLTEIVSAYFRK
VEKYNQLESSFCSQLTLLVEDGYSDVEVRVTPMLTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYVEKVNNRRFCAIAQAESLRYLVALLCGGLAMVF