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Spg013536 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg013536
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description60S ribosomal protein L44
Genome locationscaffold1:14826687..14828098
RNA-Seq ExpressionSpg013536
SyntenySpg013536
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004497 - monooxygenase activity (molecular function)
GO:0005506 - iron ion binding (molecular function)
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (molecular function)
GO:0020037 - heme binding (molecular function)
InterPro domainsIPR000552 - Ribosomal protein L44e
IPR011332 - Zinc-binding ribosomal protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2091257.1 hypothetical protein ES319_A03G179400v1 [Gossypium barbadense]1.6e-1246.4Show/hide
Query:  LVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG------------------------SVVMIVNNQDMEDKPSLSFTRRDASILRLVETRRERK
        +VNVPKTKKTY KSKECRKHTLHKVT+YKKGKDSLAAQG                        +   IV       +   + + + AS LRLVETRR ++
Subjt:  LVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG------------------------SVVMIVNNQDMEDKPSLSFTRRDASILRLVETRRERK

Query:  LLFFRCINIVIHYILLFRESKLWVS
         L   C   VIH ILL     +W S
Subjt:  LLFFRCINIVIHYILLFRESKLWVS

KAF8398722.1 hypothetical protein HHK36_014580 [Tetracentron sinense]8.4e-1459.14Show/hide
Query:  LVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQGS--VVMIVNNQDMEDKPSL---------SFTRRDASILRLVETRRERKLLFFRC
        +VNVPKTKKTY KSKECRKHTLHKVT+YKKGKDSLA QG        +    + KP           S   R ASILRLV TRR R LL FRC
Subjt:  LVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQGS--VVMIVNNQDMEDKPSL---------SFTRRDASILRLVETRRERKLLFFRC

KAG9131851.1 hypothetical protein Leryth_016583 [Lithospermum erythrorhizon]7.1e-1346.4Show/hide
Query:  LVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQGS----------------VVMIVNNQDMEDKPS---------LSFTRRDASILRLVETRRER
        +VNVPKTKKTY KSKEC+KHTLHKVT+YKKGKDS+AAQG                 V         ED+           +S   + AS LRLVE RRE+
Subjt:  LVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQGS----------------VVMIVNNQDMEDKPS---------LSFTRRDASILRLVETRRER

Query:  KLLFFRCINIVIHYIL---LFRESK
        + LF +C+ I + YI    LF  SK
Subjt:  KLLFFRCINIVIHYIL---LFRESK

KVF71622.1 Ribosomal protein L44e, partial [Cynara cardunculus var. scolymus]4.6e-1272.22Show/hide
Query:  CRCKLTLNSVKYDFALVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG
        C C   L++ +   A+VNVPKTKKTY KSK+CRKHTLHKVT+YKKGKDSLAAQG
Subjt:  CRCKLTLNSVKYDFALVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG

MBA0828907.1 hypothetical protein [Gossypium armourianum]2.1e-1244.2Show/hide
Query:  ALVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG---------------------------SVVMIVNNQDME---------DKPSLSFTRRDA
        A+VNVPKTKKTY KSKECRKHTLHKVT+YKKGKDSLAAQG                            +V+ +  Q  +           P   F    A
Subjt:  ALVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG---------------------------SVVMIVNNQDME---------DKPSLSFTRRDA

Query:  SILRLVETRRERKLLFFRCINIVIHYILLFRESKLWVS
        S LRLVETRR ++ L   C   VIH ILL     +W S
Subjt:  SILRLVETRRERKLLFFRCINIVIHYILLFRESKLWVS

TrEMBL top hitse value%identityAlignment
A0A0D2RJ15 Uncharacterized protein6.5e-1246.09Show/hide
Query:  LVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG---------------------------SVVMIVNNQDMEDKPSLSFTRRDASILRLVETRR
        +VNVPKTKKTY KSKECRKHTLHKVT+YKKGKDSLAAQG                            +V+ +  Q  +   S    +  AS LRLVETRR
Subjt:  LVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG---------------------------SVVMIVNNQDMEDKPSLSFTRRDASILRLVETRR

Query:  ERKLLFFRCINIVIHYILLFRESKLWVS
         ++ L   C   VIH ILL     +W S
Subjt:  ERKLLFFRCINIVIHYILLFRESKLWVS

A0A118G2M5 Ribosomal protein L44e (Fragment)2.2e-1272.22Show/hide
Query:  CRCKLTLNSVKYDFALVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG
        C C   L++ +   A+VNVPKTKKTY KSK+CRKHTLHKVT+YKKGKDSLAAQG
Subjt:  CRCKLTLNSVKYDFALVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG

A0A5J5WJ31 Uncharacterized protein7.6e-1346.4Show/hide
Query:  LVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG------------------------SVVMIVNNQDMEDKPSLSFTRRDASILRLVETRRERK
        +VNVPKTKKTY KSKECRKHTLHKVT+YKKGKDSLAAQG                        +   IV       +   + + + AS LRLVETRR ++
Subjt:  LVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG------------------------SVVMIVNNQDMEDKPSLSFTRRDASILRLVETRRERK

Query:  LLFFRCINIVIHYILLFRESKLWVS
         L   C   VIH ILL     +W S
Subjt:  LLFFRCINIVIHYILLFRESKLWVS

A0A7J8LWK9 Uncharacterized protein (Fragment)5.0e-1244.12Show/hide
Query:  VNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG---------------------------SVVMIVNNQDME---------DKPSLSFTRRDASI
        VNVPKTKKTY KSKECRKHTLHKVT+YKKGKDSLAAQG                            +V+ +  Q  +           P   F    AS 
Subjt:  VNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG---------------------------SVVMIVNNQDME---------DKPSLSFTRRDASI

Query:  LRLVETRRERKLLFFRCINIVIHYILLFRESKLWVS
        LRLVETRR ++ L   C   VIH ILL     +W S
Subjt:  LRLVETRRERKLLFFRCINIVIHYILLFRESKLWVS

A0A7J9J3L6 Uncharacterized protein1.0e-1244.2Show/hide
Query:  ALVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG---------------------------SVVMIVNNQDME---------DKPSLSFTRRDA
        A+VNVPKTKKTY KSKECRKHTLHKVT+YKKGKDSLAAQG                            +V+ +  Q  +           P   F    A
Subjt:  ALVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG---------------------------SVVMIVNNQDME---------DKPSLSFTRRDA

Query:  SILRLVETRRERKLLFFRCINIVIHYILLFRESKLWVS
        S LRLVETRR ++ L   C   VIH ILL     +W S
Subjt:  SILRLVETRRERKLLFFRCINIVIHYILLFRESKLWVS

SwissProt top hitse value%identityAlignment
O23290 60S ribosomal protein L36a1.4e-1182.05Show/hide
Query:  LVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG
        +VN+PKTK TY K+KEC+KHTLHKVT+YKKGKDSLAAQG
Subjt:  LVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG

P0CQ50 60S ribosomal protein L447.6e-1074.36Show/hide
Query:  LVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG
        +VN+PKT++TY K K CRKHT HKVT+YKKGKDSL+AQG
Subjt:  LVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG

P0CQ51 60S ribosomal protein L447.6e-1074.36Show/hide
Query:  LVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG
        +VN+PKT++TY K K CRKHT HKVT+YKKGKDSL+AQG
Subjt:  LVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG

P31028 60S ribosomal protein L443.8e-0976.92Show/hide
Query:  LVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG
        +VNVPKT+KTY K KECRKHT HKVT+YK GK SL AQG
Subjt:  LVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG

Q96499 60S ribosomal protein L445.6e-1392.31Show/hide
Query:  LVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG
        +VNVPKTKKTY KSKECRKHTLHKVT+YKKGKDSLAAQG
Subjt:  LVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG

Arabidopsis top hitse value%identityAlignment
AT3G23390.1 Zinc-binding ribosomal protein family protein9.9e-1382.05Show/hide
Query:  LVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG
        +VN+PKTK TY K+KEC+KHTLHKVT+YKKGKDSLAAQG
Subjt:  LVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG

AT4G14320.1 Zinc-binding ribosomal protein family protein9.9e-1382.05Show/hide
Query:  LVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG
        +VN+PKTK TY K+KEC+KHTLHKVT+YKKGKDSLAAQG
Subjt:  LVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG

AT4G14320.2 Zinc-binding ribosomal protein family protein9.9e-1382.05Show/hide
Query:  LVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG
        +VN+PKTK TY K+KEC+KHTLHKVT+YKKGKDSLAAQG
Subjt:  LVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATCACCCTGCAGCACGAAGAAAACTCGAGGAAAAGAGGTTCTGGCCTACGCCGACGCAACAGTAGCGTCGGCGTAGACAACGTCGGCAGTAGCGTCGGCGTAGA
CAACGTCGGCGTAGTTAAAAATTCTTGTAGTGACTCTAGAGACAAGACATGTCGTTGCAAACTGACTTTGAATTCTGTCAAGTACGATTTTGCTCTGGTGAACGTTCCCA
AGACAAAGAAGACTTACTACAAGAGCAAGGAATGCAGAAAGCATACCTTGCACAAGGTTACCGAATACAAGAAGGGTAAGGACAGTCTTGCTGCTCAAGGAAGCGTCGTT
ATGATCGTAAACAATCAGGATATGGAGGACAAACCAAGCCTGTCTTTCACAAGAAGAGATGCAAGCATTTTGAGATTGGTGGAAACAAGAAGGGAAAGGAAACTTCTCTT
TTTTAGATGCATTAACATTGTCATTCACTATATATTGCTTTTTAGGGAGTCAAAATTGTGGGTTTCTTCTGCCCTATGCTCTTTGTTTGGTGGTTCTGATATTTGTGAAC
ACTTTTACAAGTTGAATTTTGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATCACCCTGCAGCACGAAGAAAACTCGAGGAAAAGAGGTTCTGGCCTACGCCGACGCAACAGTAGCGTCGGCGTAGACAACGTCGGCAGTAGCGTCGGCGTAGA
CAACGTCGGCGTAGTTAAAAATTCTTGTAGTGACTCTAGAGACAAGACATGTCGTTGCAAACTGACTTTGAATTCTGTCAAGTACGATTTTGCTCTGGTGAACGTTCCCA
AGACAAAGAAGACTTACTACAAGAGCAAGGAATGCAGAAAGCATACCTTGCACAAGGTTACCGAATACAAGAAGGGTAAGGACAGTCTTGCTGCTCAAGGAAGCGTCGTT
ATGATCGTAAACAATCAGGATATGGAGGACAAACCAAGCCTGTCTTTCACAAGAAGAGATGCAAGCATTTTGAGATTGGTGGAAACAAGAAGGGAAAGGAAACTTCTCTT
TTTTAGATGCATTAACATTGTCATTCACTATATATTGCTTTTTAGGGAGTCAAAATTGTGGGTTTCTTCTGCCCTATGCTCTTTGTTTGGTGGTTCTGATATTTGTGAAC
ACTTTTACAAGTTGAATTTTGTTTAA
Protein sequenceShow/hide protein sequence
MEITLQHEENSRKRGSGLRRRNSSVGVDNVGSSVGVDNVGVVKNSCSDSRDKTCRCKLTLNSVKYDFALVNVPKTKKTYYKSKECRKHTLHKVTEYKKGKDSLAAQGSVV
MIVNNQDMEDKPSLSFTRRDASILRLVETRRERKLLFFRCINIVIHYILLFRESKLWVSSALCSLFGGSDICEHFYKLNFV