; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg013581 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg013581
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold2:24291567..24296497
RNA-Seq ExpressionSpg013581
SyntenySpg013581
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]3.0e-1262.5Show/hide
Query:  DCPLICMGESGQYADSISLPFWGKDRVGSWEHNRTRWNSLLPDFREADESGVTDTR
        DCPLI   ESGQ ADS+ L FWG+DRV SWEHN TRWNSLLP FRE  +  + + +
Subjt:  DCPLICMGESGQYADSISLPFWGKDRVGSWEHNRTRWNSLLPDFREADESGVTDTR

KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]1.8e-1276.47Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSMWVELYIESVHI
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS ++ + W+ELY ESVH+
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSMWVELYIESVHI

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]6.7e-1263.24Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSMWVELYIESVHI
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SS W+ELY+E VH+
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSMWVELYIESVHI

TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]1.0e-1270.83Show/hide
Query:  VLDCPLICMGESGQYADSISLPFWGKDRVGSWEHNRTRWNSLLPDFRE
        + DCPL C GESGQ  DSI L FWG+DRVGSWEHN TRWNS +P FR+
Subjt:  VLDCPLICMGESGQYADSISLPFWGKDRVGSWEHNRTRWNSLLPDFRE

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]6.7e-1263.24Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSMWVELYIESVHI
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SS W+ELY+E VH+
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSMWVELYIESVHI

TrEMBL top hitse value%identityAlignment
A0A5A7U2P4 Integrase catalytic domain-containing protein1.5e-1262.5Show/hide
Query:  DCPLICMGESGQYADSISLPFWGKDRVGSWEHNRTRWNSLLPDFREADESGVTDTR
        DCPLI   ESGQ ADS+ L FWG+DRV SWEHN TRWNSLLP FRE  +  + + +
Subjt:  DCPLICMGESGQYADSISLPFWGKDRVGSWEHNRTRWNSLLPDFREADESGVTDTR

A0A5A7V638 Uncharacterized protein8.5e-1376.47Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSMWVELYIESVHI
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS ++ + W+ELY ESVH+
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSMWVELYIESVHI

A0A5A7VMG9 Reverse transcriptase3.2e-1263.24Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSMWVELYIESVHI
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SS W+ELY+E VH+
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSMWVELYIESVHI

A0A5D3C3J6 Gag/pol protein5.0e-1370.83Show/hide
Query:  VLDCPLICMGESGQYADSISLPFWGKDRVGSWEHNRTRWNSLLPDFRE
        + DCPL C GESGQ  DSI L FWG+DRVGSWEHN TRWNS +P FR+
Subjt:  VLDCPLICMGESGQYADSISLPFWGKDRVGSWEHNRTRWNSLLPDFRE

A0A5D3DX39 Reverse transcriptase3.2e-1263.24Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSMWVELYIESVHI
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SS W+ELY+E VH+
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSMWVELYIESVHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAG
CTCCAGTATGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTAGATTGTCCTTTGATTTGCATGGGTGAGAGTGGCCAATACGCCGACTCAATAAGCC
TACCATTCTGGGGAAAAGACCGAGTGGGGAGCTGGGAACATAATCGTACAAGATGGAATTCACTCCTTCCCGACTTTAGGGAAGCAGATGAGTCTGGTGTTACAGACACT
CGTGAAGGACTAACTAGTCGATATTGGTCTATGTCCGTGGACACAGAAAATATGTCTGCAGTGAGAAGGCAACTGTCCATTAGGTCCCACTGCGATTATAAGACAAGGAG
GCTGCTGCGTTTTCGATCGTTGGAGCGTCGTTGGCGAAGAACGGTCAAGTCTACAACGAAGGACCAAAATGGACAACGTATAGAACTCGAAGATACAAGATTAGTTGTGT
GTGATATCTGTCGCCTCAATTCACCAACAAGAAGGATAGTTCCAGAGCTTGGTCTCACTATTTCTTCGGTAAATTCGATAGATATTCACTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAG
CTCCAGTATGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTAGATTGTCCTTTGATTTGCATGGGTGAGAGTGGCCAATACGCCGACTCAATAAGCC
TACCATTCTGGGGAAAAGACCGAGTGGGGAGCTGGGAACATAATCGTACAAGATGGAATTCACTCCTTCCCGACTTTAGGGAAGCAGATGAGTCTGGTGTTACAGACACT
CGTGAAGGACTAACTAGTCGATATTGGTCTATGTCCGTGGACACAGAAAATATGTCTGCAGTGAGAAGGCAACTGTCCATTAGGTCCCACTGCGATTATAAGACAAGGAG
GCTGCTGCGTTTTCGATCGTTGGAGCGTCGTTGGCGAAGAACGGTCAAGTCTACAACGAAGGACCAAAATGGACAACGTATAGAACTCGAAGATACAAGATTAGTTGTGT
GTGATATCTGTCGCCTCAATTCACCAACAAGAAGGATAGTTCCAGAGCTTGGTCTCACTATTTCTTCGGTAAATTCGATAGATATTCACTAA
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSMWVELYIESVHIVNVLDCPLICMGESGQYADSISLPFWGKDRVGSWEHNRTRWNSLLPDFREADESGVTDT
REGLTSRYWSMSVDTENMSAVRRQLSIRSHCDYKTRRLLRFRSLERRWRRTVKSTTKDQNGQRIELEDTRLVVCDICRLNSPTRRIVPELGLTISSVNSIDIH