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Spg013611 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg013611
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSWIM-type domain-containing protein
Genome locationscaffold2:23621007..23624716
RNA-Seq ExpressionSpg013611
SyntenySpg013611
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR006564 - Zinc finger, PMZ-type
IPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035755.1 uncharacterized protein E6C27_scaffold403G00270 [Cucumis melo var. makuwa]9.5e-3042.86Show/hide
Query:  TRLSFYRNGANKSVINRICE------DRDVYPINQYAFEIIDGNKNFEVNIQSCSCTCRRWELDLIPCAHACLALRRRGLILHRYVNEFYHISTLQQMYS
        T+ SF R   + S  + I E        ++YP++Q+ FE+    + F VNI + +C+CR+W+LDLIPC+HAC+AL  R L LH Y ++FY++S L  +Y 
Subjt:  TRLSFYRNGANKSVINRICE------DRDVYPINQYAFEIIDGNKNFEVNIQSCSCTCRRWELDLIPCAHACLALRRRGLILHRYVNEFYHISTLQQMYS

Query:  TDIRPIGRIQ--HTPHSIVDTPISPPNVKRSAGRPRKRRILSTGERKSTSKCGRCGQSGHNRRCCKNP
           RPIG +      H   +  I PP VKR AGRP+K+R  S  E+K++ +C RCG+ GHN R CK P
Subjt:  TDIRPIGRIQ--HTPHSIVDTPISPPNVKRSAGRPRKRRILSTGERKSTSKCGRCGQSGHNRRCCKNP

KAA0047595.1 uncharacterized protein E6C27_scaffold115G00630 [Cucumis melo var. makuwa]4.3e-3043.9Show/hide
Query:  TRLSFYRNGANKSVINRICEDR--DVYPINQYAFEIIDGNKNFEVNIQSCSCTCRRWELDLIPCAHACLALRRRGLILHRYVNEFYHISTLQQMYSTDIR
        T+LS Y   A   +   + + R  ++YP++Q+ FE+    + F VNI + +C+CR+W+LDLIPC+HAC+AL  R L LH Y N+FY++S L  +Y    R
Subjt:  TRLSFYRNGANKSVINRICEDR--DVYPINQYAFEIIDGNKNFEVNIQSCSCTCRRWELDLIPCAHACLALRRRGLILHRYVNEFYHISTLQQMYSTDIR

Query:  PIGRIQ--HTPHSIVDTPISPPNVKRSAGRPRKRRILSTGERKSTSKCGRCGQSGHNRRCCKNP
        PIG +      H   +  I PP VKR AGRP+K+R  S  E+K++ +C RCG+ GHN R CK P
Subjt:  PIGRIQ--HTPHSIVDTPISPPNVKRSAGRPRKRRILSTGERKSTSKCGRCGQSGHNRRCCKNP

TYK09853.1 uncharacterized protein E5676_scaffold39G00210 [Cucumis melo var. makuwa]9.5e-3043.29Show/hide
Query:  TRLSFYRNGANKSVINRICEDR--DVYPINQYAFEIIDGNKNFEVNIQSCSCTCRRWELDLIPCAHACLALRRRGLILHRYVNEFYHISTLQQMYSTDIR
        T+LS Y   A   +   + + R  ++YP++Q+ FE+    + F VNI + +C+CR+W+LDLIPC+HAC+AL  R L LH Y ++FY++S L  +Y    R
Subjt:  TRLSFYRNGANKSVINRICEDR--DVYPINQYAFEIIDGNKNFEVNIQSCSCTCRRWELDLIPCAHACLALRRRGLILHRYVNEFYHISTLQQMYSTDIR

Query:  PIGRIQ--HTPHSIVDTPISPPNVKRSAGRPRKRRILSTGERKSTSKCGRCGQSGHNRRCCKNP
        PIG +      H   +  I PP VKR AGRP+K+R  S  E+K++ +C RCG+ GHN R CK P
Subjt:  PIGRIQ--HTPHSIVDTPISPPNVKRSAGRPRKRRILSTGERKSTSKCGRCGQSGHNRRCCKNP

XP_008442298.1 PREDICTED: uncharacterized protein LOC103486212 [Cucumis melo]9.5e-3042.86Show/hide
Query:  TRLSFYRNGANKSVINRICE------DRDVYPINQYAFEIIDGNKNFEVNIQSCSCTCRRWELDLIPCAHACLALRRRGLILHRYVNEFYHISTLQQMYS
        T+ SF R   + S  + I E        ++YP++Q+ FE+    + F VNI + +C+CR+W+LDLIPC+HAC+AL  R L LH Y ++FY++S L  +Y 
Subjt:  TRLSFYRNGANKSVINRICE------DRDVYPINQYAFEIIDGNKNFEVNIQSCSCTCRRWELDLIPCAHACLALRRRGLILHRYVNEFYHISTLQQMYS

Query:  TDIRPIGRIQ--HTPHSIVDTPISPPNVKRSAGRPRKRRILSTGERKSTSKCGRCGQSGHNRRCCKNP
           RPIG +      H   +  I PP VKR AGRP+K+R  S  E+K++ +C RCG+ GHN R CK P
Subjt:  TDIRPIGRIQ--HTPHSIVDTPISPPNVKRSAGRPRKRRILSTGERKSTSKCGRCGQSGHNRRCCKNP

XP_022157216.1 uncharacterized protein LOC111023978 [Momordica charantia]3.6e-3752.86Show/hide
Query:  DVYPINQYAFEIIDGNKNFEVNIQSCSCTCRRWELDLIPCAHACLALRRRGLILHRYVNEFYHISTLQQMYSTDIRPIGRIQH--TPHSIVDTPISPPNV
        D+YP++QY +++ + +++F VNI  C+C  ++W++D IPC+HACLA+ RRGL LH +V++FYH+ TLQ +YS ++ PIG+I++   P    DT I PPNV
Subjt:  DVYPINQYAFEIIDGNKNFEVNIQSCSCTCRRWELDLIPCAHACLALRRRGLILHRYVNEFYHISTLQQMYSTDIRPIGRIQH--TPHSIVDTPISPPNV

Query:  KRSAGRPRKRRILSTGERKSTSKCGRCGQSGHNRRCCKNP
        KRSAGRPRK+R++S  E  +T +CGRC + GHNRR CKNP
Subjt:  KRSAGRPRKRRILSTGERKSTSKCGRCGQSGHNRRCCKNP

TrEMBL top hitse value%identityAlignment
A0A1S3B5C9 uncharacterized protein LOC1034862124.6e-3042.86Show/hide
Query:  TRLSFYRNGANKSVINRICE------DRDVYPINQYAFEIIDGNKNFEVNIQSCSCTCRRWELDLIPCAHACLALRRRGLILHRYVNEFYHISTLQQMYS
        T+ SF R   + S  + I E        ++YP++Q+ FE+    + F VNI + +C+CR+W+LDLIPC+HAC+AL  R L LH Y ++FY++S L  +Y 
Subjt:  TRLSFYRNGANKSVINRICE------DRDVYPINQYAFEIIDGNKNFEVNIQSCSCTCRRWELDLIPCAHACLALRRRGLILHRYVNEFYHISTLQQMYS

Query:  TDIRPIGRIQ--HTPHSIVDTPISPPNVKRSAGRPRKRRILSTGERKSTSKCGRCGQSGHNRRCCKNP
           RPIG +      H   +  I PP VKR AGRP+K+R  S  E+K++ +C RCG+ GHN R CK P
Subjt:  TDIRPIGRIQ--HTPHSIVDTPISPPNVKRSAGRPRKRRILSTGERKSTSKCGRCGQSGHNRRCCKNP

A0A5A7T2S1 Uncharacterized protein4.6e-3042.86Show/hide
Query:  TRLSFYRNGANKSVINRICE------DRDVYPINQYAFEIIDGNKNFEVNIQSCSCTCRRWELDLIPCAHACLALRRRGLILHRYVNEFYHISTLQQMYS
        T+ SF R   + S  + I E        ++YP++Q+ FE+    + F VNI + +C+CR+W+LDLIPC+HAC+AL  R L LH Y ++FY++S L  +Y 
Subjt:  TRLSFYRNGANKSVINRICE------DRDVYPINQYAFEIIDGNKNFEVNIQSCSCTCRRWELDLIPCAHACLALRRRGLILHRYVNEFYHISTLQQMYS

Query:  TDIRPIGRIQ--HTPHSIVDTPISPPNVKRSAGRPRKRRILSTGERKSTSKCGRCGQSGHNRRCCKNP
           RPIG +      H   +  I PP VKR AGRP+K+R  S  E+K++ +C RCG+ GHN R CK P
Subjt:  TDIRPIGRIQ--HTPHSIVDTPISPPNVKRSAGRPRKRRILSTGERKSTSKCGRCGQSGHNRRCCKNP

A0A5A7U1T3 Uncharacterized protein2.1e-3043.9Show/hide
Query:  TRLSFYRNGANKSVINRICEDR--DVYPINQYAFEIIDGNKNFEVNIQSCSCTCRRWELDLIPCAHACLALRRRGLILHRYVNEFYHISTLQQMYSTDIR
        T+LS Y   A   +   + + R  ++YP++Q+ FE+    + F VNI + +C+CR+W+LDLIPC+HAC+AL  R L LH Y N+FY++S L  +Y    R
Subjt:  TRLSFYRNGANKSVINRICEDR--DVYPINQYAFEIIDGNKNFEVNIQSCSCTCRRWELDLIPCAHACLALRRRGLILHRYVNEFYHISTLQQMYSTDIR

Query:  PIGRIQ--HTPHSIVDTPISPPNVKRSAGRPRKRRILSTGERKSTSKCGRCGQSGHNRRCCKNP
        PIG +      H   +  I PP VKR AGRP+K+R  S  E+K++ +C RCG+ GHN R CK P
Subjt:  PIGRIQ--HTPHSIVDTPISPPNVKRSAGRPRKRRILSTGERKSTSKCGRCGQSGHNRRCCKNP

A0A5D3CDB8 Uncharacterized protein4.6e-3043.29Show/hide
Query:  TRLSFYRNGANKSVINRICEDR--DVYPINQYAFEIIDGNKNFEVNIQSCSCTCRRWELDLIPCAHACLALRRRGLILHRYVNEFYHISTLQQMYSTDIR
        T+LS Y   A   +   + + R  ++YP++Q+ FE+    + F VNI + +C+CR+W+LDLIPC+HAC+AL  R L LH Y ++FY++S L  +Y    R
Subjt:  TRLSFYRNGANKSVINRICEDR--DVYPINQYAFEIIDGNKNFEVNIQSCSCTCRRWELDLIPCAHACLALRRRGLILHRYVNEFYHISTLQQMYSTDIR

Query:  PIGRIQ--HTPHSIVDTPISPPNVKRSAGRPRKRRILSTGERKSTSKCGRCGQSGHNRRCCKNP
        PIG +      H   +  I PP VKR AGRP+K+R  S  E+K++ +C RCG+ GHN R CK P
Subjt:  PIGRIQ--HTPHSIVDTPISPPNVKRSAGRPRKRRILSTGERKSTSKCGRCGQSGHNRRCCKNP

A0A6J1DXB4 uncharacterized protein LOC1110239781.7e-3752.86Show/hide
Query:  DVYPINQYAFEIIDGNKNFEVNIQSCSCTCRRWELDLIPCAHACLALRRRGLILHRYVNEFYHISTLQQMYSTDIRPIGRIQH--TPHSIVDTPISPPNV
        D+YP++QY +++ + +++F VNI  C+C  ++W++D IPC+HACLA+ RRGL LH +V++FYH+ TLQ +YS ++ PIG+I++   P    DT I PPNV
Subjt:  DVYPINQYAFEIIDGNKNFEVNIQSCSCTCRRWELDLIPCAHACLALRRRGLILHRYVNEFYHISTLQQMYSTDIRPIGRIQH--TPHSIVDTPISPPNV

Query:  KRSAGRPRKRRILSTGERKSTSKCGRCGQSGHNRRCCKNP
        KRSAGRPRK+R++S  E  +T +CGRC + GHNRR CKNP
Subjt:  KRSAGRPRKRRILSTGERKSTSKCGRCGQSGHNRRCCKNP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTACGCGTCATGCTACGCTAACAACCGCAAGCATTACGCGCCATGCTACGCAAAACCAACCGCATGCATTACGTGCCATGCTAAGCAAAACCATTCGCATGCATT
ACGCGTCATGCTACGCAAAACCAAACACGTGAATTATGCGCCACGCTGCGCACCTATACTGTTCTTCCATTCTCATAGCAAGACCAAGGAAATGTCACCTCAACCTATCA
CTATCCTATTTGATGGTAAATGGGATGAACAAAATCACTACAAAGATTTTAAGGCCTGTCAAGTGTTAGTTCCCATGAATTCTTCCTTATCATTTCTTATTAACTACATC
ACAGACACGCTCGAATTTACAGATGGAAAAAAGGTTACCCGATTGTCTTTTTATAGAAATGGGGCAAATAAGTCTGTTATAAATAGGATATGCGAAGACAGAGATGTATA
TCCCATAAATCAATATGCTTTTGAAATCATTGATGGCAACAAAAACTTTGAAGTCAACATCCAAAGTTGTAGTTGCACATGTAGGAGATGGGAGTTAGACTTGATTCCAT
GTGCACATGCTTGTTTGGCCTTACGTCGTAGAGGTTTGATTTTGCATCGATACGTAAATGAATTTTATCACATCTCAACCCTACAACAAATGTATAGCACTGATATACGC
CCAATAGGCCGCATTCAACATACCCCTCATTCTATTGTTGACACTCCAATTTCTCCTCCTAATGTTAAGCGTTCAGCTGGAAGACCACGGAAAAGGAGAATTTTATCAAC
TGGTGAAAGGAAGTCTACTTCAAAATGTGGAAGATGTGGACAATCAGGACATAACCGGAGGTGTTGCAAAAACCCAAGATTGAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTTACGCGTCATGCTACGCTAACAACCGCAAGCATTACGCGCCATGCTACGCAAAACCAACCGCATGCATTACGTGCCATGCTAAGCAAAACCATTCGCATGCATT
ACGCGTCATGCTACGCAAAACCAAACACGTGAATTATGCGCCACGCTGCGCACCTATACTGTTCTTCCATTCTCATAGCAAGACCAAGGAAATGTCACCTCAACCTATCA
CTATCCTATTTGATGGTAAATGGGATGAACAAAATCACTACAAAGATTTTAAGGCCTGTCAAGTGTTAGTTCCCATGAATTCTTCCTTATCATTTCTTATTAACTACATC
ACAGACACGCTCGAATTTACAGATGGAAAAAAGGTTACCCGATTGTCTTTTTATAGAAATGGGGCAAATAAGTCTGTTATAAATAGGATATGCGAAGACAGAGATGTATA
TCCCATAAATCAATATGCTTTTGAAATCATTGATGGCAACAAAAACTTTGAAGTCAACATCCAAAGTTGTAGTTGCACATGTAGGAGATGGGAGTTAGACTTGATTCCAT
GTGCACATGCTTGTTTGGCCTTACGTCGTAGAGGTTTGATTTTGCATCGATACGTAAATGAATTTTATCACATCTCAACCCTACAACAAATGTATAGCACTGATATACGC
CCAATAGGCCGCATTCAACATACCCCTCATTCTATTGTTGACACTCCAATTTCTCCTCCTAATGTTAAGCGTTCAGCTGGAAGACCACGGAAAAGGAGAATTTTATCAAC
TGGTGAAAGGAAGTCTACTTCAAAATGTGGAAGATGTGGACAATCAGGACATAACCGGAGGTGTTGCAAAAACCCAAGATTGAATTGA
Protein sequenceShow/hide protein sequence
MIYASCYANNRKHYAPCYAKPTACITCHAKQNHSHALRVMLRKTKHVNYAPRCAPILFFHSHSKTKEMSPQPITILFDGKWDEQNHYKDFKACQVLVPMNSSLSFLINYI
TDTLEFTDGKKVTRLSFYRNGANKSVINRICEDRDVYPINQYAFEIIDGNKNFEVNIQSCSCTCRRWELDLIPCAHACLALRRRGLILHRYVNEFYHISTLQQMYSTDIR
PIGRIQHTPHSIVDTPISPPNVKRSAGRPRKRRILSTGERKSTSKCGRCGQSGHNRRCCKNPRLN