; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg013621 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg013621
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description40S ribosomal protein S27
Genome locationscaffold3:41436800..41438301
RNA-Seq ExpressionSpg013621
SyntenySpg013621
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000592 - Ribosomal protein S27
IPR011332 - Zinc-binding ribosomal protein
IPR023407 - Ribosomal protein S27, zinc-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EYU46714.1 hypothetical protein MIMGU_mgv1a016569mg [Erythranthe guttata]2.2e-4277.59Show/hide
Query:  SVTYIAPPCFSRELSLGFRVRDPDNCFLINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTG
        ++  +A   F  ELSL F  + P++     MVL ND DLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ VLCQPTG
Subjt:  SVTYIAPPCFSRELSLGFRVRDPDNCFLINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTG

Query:  GRAKLTEGCSFRRKGD
        GRA+LTEGCSFRRKGD
Subjt:  GRAKLTEGCSFRRKGD

KAF5449188.1 hypothetical protein F2P56_029664, partial [Juglans regia]1.3e-4295.56Show/hide
Query:  FLINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        FL  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ VLCQPTGGRA+LTEGCSFRRKGD
Subjt:  FLINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

KAG6592828.1 40S ribosomal protein S27-2, partial [Cucurbita argyrosperma subsp. sororia]6.8e-4494.62Show/hide
Query:  DNCFLINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        D+  LINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ+VLCQPTGGRA+LTEGCSFRRKGD
Subjt:  DNCFLINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

XP_022953224.1 uncharacterized protein LOC111455834 [Cucurbita moschata]2.1e-4895.96Show/hide
Query:  FRVRDPDNCFLINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        FRVRDPD CFLI MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ VLCQPTGGRA+LTEGCSFRRKGD
Subjt:  FRVRDPDNCFLINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

XP_022991567.1 40S ribosomal protein S27-2-like [Cucurbita maxima]2.1e-4895.96Show/hide
Query:  FRVRDPDNCFLINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        FRVRDPD CFLI MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ VLCQPTGGRA+LTEGCSFRRKGD
Subjt:  FRVRDPDNCFLINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

TrEMBL top hitse value%identityAlignment
A0A022S2Y8 40S ribosomal protein S271.1e-4277.59Show/hide
Query:  SVTYIAPPCFSRELSLGFRVRDPDNCFLINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTG
        ++  +A   F  ELSL F  + P++     MVL ND DLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ VLCQPTG
Subjt:  SVTYIAPPCFSRELSLGFRVRDPDNCFLINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTG

Query:  GRAKLTEGCSFRRKGD
        GRA+LTEGCSFRRKGD
Subjt:  GRAKLTEGCSFRRKGD

A0A0A0K9G0 40S ribosomal protein S271.1e-4297.75Show/hide
Query:  LINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        LI MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ VLCQPTGGRAKLTEGCSFRRKGD
Subjt:  LINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

A0A6J1D6X7 40S ribosomal protein S271.4e-42100Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

A0A6J1GP15 40S ribosomal protein S271.0e-4895.96Show/hide
Query:  FRVRDPDNCFLINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        FRVRDPD CFLI MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ VLCQPTGGRA+LTEGCSFRRKGD
Subjt:  FRVRDPDNCFLINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

A0A6J1JM72 40S ribosomal protein S271.0e-4895.96Show/hide
Query:  FRVRDPDNCFLINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        FRVRDPD CFLI MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ VLCQPTGGRA+LTEGCSFRRKGD
Subjt:  FRVRDPDNCFLINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

SwissProt top hitse value%identityAlignment
O64650 40S ribosomal protein S27-13.3e-4192.86Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRK
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQ +LC PTGG+AKLTEGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRK

P47903 40S ribosomal protein S271.1e-3683.72Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+C +VLC PTG   +LTEGCSFRRK D
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

Q8L953 40S ribosomal protein S27-32.1e-4091.67Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRK
        MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ VLCQPTGG+A+L EGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRK

Q96564 40S ribosomal protein S277.4e-4191.86Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  CQ VLCQPTGG+A+LTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

Q9M2F1 40S ribosomal protein S27-23.2e-4496.51Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ +LCQPTGG+AKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

Arabidopsis top hitse value%identityAlignment
AT2G45710.1 Zinc-binding ribosomal protein family protein2.3e-4292.86Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRK
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQ +LC PTGG+AKLTEGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRK

AT3G61110.1 ribosomal protein S272.3e-4596.51Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ +LCQPTGG+AKLTEGCSFRRKGD
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

AT3G61111.1 Zinc-binding ribosomal protein family protein6.6e-3782.56Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD
        MVLQNDIDLLNPPAELEKRKHKLKRLV SPNS+FM V+C  C NITT+FSHSQTVVVCG CQ VLCQPTGG+AKLT GCSFR+  D
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRKGD

AT5G47930.1 Zinc-binding ribosomal protein family protein1.5e-4191.67Show/hide
Query:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRK
        MVLQNDIDLL+PP ELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ VLCQPTGG+A+L EGCSFR+K
Subjt:  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQPTGGRAKLTEGCSFRRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCTCCTTTATATTCCTCTTTGACGGCGCTTTTCTTTTCTTCCGTAACATACATCGCACCGCCCTGTTTCTCTCGCGAACTCTCGTTGGGATTTAGGGTTCGCGATCCAGA
CAATTGCTTTCTGATCAACATGGTTCTTCAAAACGACATCGATTTGCTCAATCCTCCGGCCGAACTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAGTCGCCCA
ACTCATTCTTCATGGACGTGAAGTGCCAGGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAAACAGTTGTAGTGTGTGGGAATTGCCAGGCGGTCTTGTGCCAG
CCAACTGGAGGGCGCGCTAAGCTTACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGACTAA
mRNA sequenceShow/hide mRNA sequence
GCTCCTTTATATTCCTCTTTGACGGCGCTTTTCTTTTCTTCCGTAACATACATCGCACCGCCCTGTTTCTCTCGCGAACTCTCGTTGGGATTTAGGGTTCGCGATCCAGA
CAATTGCTTTCTGATCAACATGGTTCTTCAAAACGACATCGATTTGCTCAATCCTCCGGCCGAACTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAGTCGCCCA
ACTCATTCTTCATGGACGTGAAGTGCCAGGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAAACAGTTGTAGTGTGTGGGAATTGCCAGGCGGTCTTGTGCCAG
CCAACTGGAGGGCGCGCTAAGCTTACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGACTAA
Protein sequenceShow/hide protein sequence
APLYSSLTALFFSSVTYIAPPCFSRELSLGFRVRDPDNCFLINMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQAVLCQ
PTGGRAKLTEGCSFRRKGD