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Spg013721 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg013721
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description60S ribosomal protein L38
Genome locationscaffold3:37713920..37715508
RNA-Seq ExpressionSpg013721
SyntenySpg013721
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022618 - ribonucleoprotein complex assembly (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002675 - Ribosomal protein L38e
IPR038464 - Ribosomal protein L38e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG0458562.1 hypothetical protein HPP92_023719 [Vanilla planifolia]5.0e-2698.46Show/hide
Query:  DLKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        D KPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
Subjt:  DLKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

KAG0460291.1 hypothetical protein HPP92_023419 [Vanilla planifolia]5.0e-2698.46Show/hide
Query:  DLKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        D KPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
Subjt:  DLKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

KAG5530677.1 hypothetical protein RHGRI_025592 [Rhododendron griersonianum]8.6e-2687.5Show/hide
Query:  TITLQGQDLKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        +++L   + +PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
Subjt:  TITLQGQDLKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

MQL76196.1 hypothetical protein [Colocasia esculenta]3.5e-2766.67Show/hide
Query:  VCPTGLLRKTIECKESRIGKQPIQLPSNVTITLQGQD-------LKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADK
        +C + L+  +I   +   G++  Q P    I L   D       L+PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADK
Subjt:  VCPTGLLRKTIECKESRIGKQPIQLPSNVTITLQGQD-------LKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADK

Query:  LKQSLPPG
        LKQSLPPG
Subjt:  LKQSLPPG

PKA55937.1 60S ribosomal protein L38 [Apostasia shenzhenica]1.0e-2656.62Show/hide
Query:  MASTLSVPFQTSNLWSTFLGEKN----GFSISAMPVCPTGLLRKTIECKESRIGKQPIQLPSNVTITLQGQDLKPKQIHEIKDFLLTARRKDARSVKIKR
        MAS +S+    S L S +  + N    GF  S + V  +      ++     I   P Q+  ++       D  PKQIHEIKDFLLTARRKDARSVKIKR
Subjt:  MASTLSVPFQTSNLWSTFLGEKN----GFSISAMPVCPTGLLRKTIECKESRIGKQPIQLPSNVTITLQGQDLKPKQIHEIKDFLLTARRKDARSVKIKR

Query:  SKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        SKDVVKFKVRC+KYLYTLCVFDSEKADKLKQSLPPG
Subjt:  SKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

TrEMBL top hitse value%identityAlignment
A0A2I0AK66 60S ribosomal protein L384.9e-2756.62Show/hide
Query:  MASTLSVPFQTSNLWSTFLGEKN----GFSISAMPVCPTGLLRKTIECKESRIGKQPIQLPSNVTITLQGQDLKPKQIHEIKDFLLTARRKDARSVKIKR
        MAS +S+    S L S +  + N    GF  S + V  +      ++     I   P Q+  ++       D  PKQIHEIKDFLLTARRKDARSVKIKR
Subjt:  MASTLSVPFQTSNLWSTFLGEKN----GFSISAMPVCPTGLLRKTIECKESRIGKQPIQLPSNVTITLQGQDLKPKQIHEIKDFLLTARRKDARSVKIKR

Query:  SKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        SKDVVKFKVRC+KYLYTLCVFDSEKADKLKQSLPPG
Subjt:  SKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

A0A438CVC8 60S ribosomal protein L385.4e-2698.44Show/hide
Query:  LKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        L+PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
Subjt:  LKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

A0A438GMB0 60S ribosomal protein L385.4e-2698.44Show/hide
Query:  LKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        L+PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
Subjt:  LKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

A0A4S8J6L6 Uncharacterized protein4.2e-2683.54Show/hide
Query:  IQLPSNVTITLQGQDLKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        I  PS  T+   G   +PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRC+KYLYTLCVFDSEKADKLKQSLPPG
Subjt:  IQLPSNVTITLQGQDLKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

B9RM38 60S ribosomal protein L38, putative4.2e-2696.92Show/hide
Query:  DLKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        +L+PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
Subjt:  DLKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

SwissProt top hitse value%identityAlignment
O22860 60S ribosomal protein L383.6e-2795.16Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPG
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

P46291 60S ribosomal protein L384.4e-2590.32Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        PKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSLPPG
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

P63173 60S ribosomal protein L385.1e-2179.03Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        P++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPG
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

Q32PB9 60S ribosomal protein L385.1e-2179.03Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        P++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPPG
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

Q95V84 60S ribosomal protein L383.2e-2385.48Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        PKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSLPPG
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

Arabidopsis top hitse value%identityAlignment
AT1G05190.1 Ribosomal protein L6 family5.0e-1659.72Show/hide
Query:  MASTLSVPFQTSNLWSTFLGEKNGFSISAMPVCPTGLLRKTIECKESRIGKQPIQLPSNVTITLQGQDLKPK
        MAS+L   FQ     S FLG++N F +S+ P    G   KTIECKESRIGKQPI +PSNVTI L+GQDLK K
Subjt:  MASTLSVPFQTSNLWSTFLGEKNGFSISAMPVCPTGLLRKTIECKESRIGKQPIQLPSNVTITLQGQDLKPK

AT2G43460.1 Ribosomal L38e protein family2.6e-2895.16Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPG
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG

AT3G59540.1 Ribosomal L38e protein family2.6e-2895.16Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG
        PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPG
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCACGCTATCCGTCCCTTTTCAAACCAGCAATCTTTGGTCTACATTTTTGGGAGAGAAAAATGGATTCTCTATTTCTGCAATGCCTGTATGTCCTACTGGTCT
CTTGAGGAAGACTATAGAATGCAAGGAATCACGAATAGGGAAGCAACCAATTCAATTGCCATCCAATGTAACCATCACATTGCAGGGTCAGGATTTGAAACCGAAGCAAA
TTCATGAGATCAAAGATTTCCTTCTCACTGCAAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAGTAT
CTTTATACTCTTTGTGTTTTTGACTCTGAGAAGGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCACGCTATCCGTCCCTTTTCAAACCAGCAATCTTTGGTCTACATTTTTGGGAGAGAAAAATGGATTCTCTATTTCTGCAATGCCTGTATGTCCTACTGGTCT
CTTGAGGAAGACTATAGAATGCAAGGAATCACGAATAGGGAAGCAACCAATTCAATTGCCATCCAATGTAACCATCACATTGCAGGGTCAGGATTTGAAACCGAAGCAAA
TTCATGAGATCAAAGATTTCCTTCTCACTGCAAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAGTAT
CTTTATACTCTTTGTGTTTTTGACTCTGAGAAGGCAGACAAGTTGAAGCAATCTCTTCCACCAGGTTAG
Protein sequenceShow/hide protein sequence
MASTLSVPFQTSNLWSTFLGEKNGFSISAMPVCPTGLLRKTIECKESRIGKQPIQLPSNVTITLQGQDLKPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKY
LYTLCVFDSEKADKLKQSLPPG