CuGenDBv2

Gene ID	Spg013732
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RRM domain-containing protein
Genome location	scaffold3:37465108..37466712
RNA-Seq Expression	Spg013732
Synteny	Spg013732
Gene Ontology terms	GO:0006396 - RNA processing (biological process) GO:0032991 - protein-containing complex (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6592987.1 hypothetical protein SDJN03_12463, partial [Cucurbita argyrosperma subsp. sororia]

3.9e-81

85.11

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Query:  HLPLLKAPLPIFSSTGSCPSLSADHFVSPLRTDPSLSFHMGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQ
        H   L++ +   ++TGSCP+L+  HFV PLRT  SLS HMGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+ EPINSSQ
Subjt:  HLPLLKAPLPIFSSTGSCPSLSADHFVSPLRTDPSLSFHMGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQ

Query:  CALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAEVEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLK
        CALVEMKD KEA SVISVIAQFPFMMSGMPRPVRA PAEVEMFDDRPIKPGRKISFVWL KDDPDFEVAKKMK +TQRHVAEAAFLLK
Subjt:  CALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAEVEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLK

KAG7025396.1 hypothetical protein SDJN02_11891, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.0e-81

85.64

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Query:  HLPLLKAPLPIFSSTGSCPSLSADHFVSPLRTDPSLSFHMGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQ
        H   L++ +   ++TGSCP+L+  HFVSPLRT  SLS HMGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+ EPINSSQ
Subjt:  HLPLLKAPLPIFSSTGSCPSLSADHFVSPLRTDPSLSFHMGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQ

Query:  CALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAEVEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLK
        CALVEMKD KEA SVISVIAQFPFMMSGMPRPVRA PAEVEMFDDRPIKPGRKISFVWL KDDPDFEVAKKMK +TQRHVAEAAFLLK
Subjt:  CALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAEVEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLK

XP_022959585.1 uncharacterized protein LOC111460615 [Cucurbita moschata]

2.4e-70

93.29

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE
        MGSATDEQY KFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+ EPINSSQCALVEMKD KEA SVIS+IAQFPFMMSGMPRPVRA PAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLK
        VEMFDDRPIKPGRKISFVWL KDDPDFEVAKKMK +TQRHVAEAAFLLK
Subjt:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLK

XP_023004840.1 uncharacterized protein LOC111498019 [Cucurbita maxima]

2.4e-70

93.29

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE
        MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+ EPINSSQCALVEMKD KEA SVISVI+QFPFMMSGMPRPVRA PAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLK
        VEMFDDRPIKPGRKISFVWL K+DPDFEVAKKMK +TQRHVAEAAFLLK
Subjt:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLK

XP_023514768.1 uncharacterized protein LOC111778981 [Cucurbita pepo subsp. pepo]

3.7e-71

94.63

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE
        MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+ EPINSSQCALVEMKD KEA SVISVIAQFPFMMSGMPRPVRA PAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLK
        VEMFDDRPIKPGRKISFVWL KDDPDFEVAKKMK +TQRHVAEAAFLLK
Subjt:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAE7 RRM domain-containing protein

1.0e-66

87.25

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE
        MGS  DEQ+A FEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPNY EPINSSQCALVEMKD KEAKSVI+VIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLK
        VEMFDDRP+KPGRKISF WLE DDPDFEVA+++KR++++HVAEAAFL+K
Subjt:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLK

A0A1S3B3J3 uncharacterized protein LOC103485592

4.1e-68

87.92

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE
        MGSA DEQ++ FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPNY EPINSSQCALVEMKD KEAKSVI+VIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLK
         EMFDDRP+KPGRKISF WLE DDPDFEVA+++KR+T++HVAEAAFLLK
Subjt:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLK

A0A5A7UL27 RRM_1 domain-containing protein

1.4e-68

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE
        MGSA DEQ++ FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPNY EPINSSQCALVEMKD KEAKSVI+VIAQFPFMMSGMPRPVRARPAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLKA
         EMFDDRP+KPGRKISF WLE DDPDFEVA+++KR+T++HVAEAAFLLKA
Subjt:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLKA

A0A6J1H6P8 uncharacterized protein LOC111460615

1.2e-70

93.29

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE
        MGSATDEQY KFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+ EPINSSQCALVEMKD KEA SVIS+IAQFPFMMSGMPRPVRA PAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLK
        VEMFDDRPIKPGRKISFVWL KDDPDFEVAKKMK +TQRHVAEAAFLLK
Subjt:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLK

A0A6J1KVQ1 uncharacterized protein LOC111498019

1.2e-70

93.29

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE
        MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPN+ EPINSSQCALVEMKD KEA SVISVI+QFPFMMSGMPRPVRA PAE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLK
        VEMFDDRPIKPGRKISFVWL K+DPDFEVAKKMK +TQRHVAEAAFLLK
Subjt:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G05970.1 RNA-binding (RRM/RBD/RNP motifs) family protein

2.8e-37

49.66

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE
        M +  +  Y KF E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPNY  P       LVEM++ +  ++VIS ++Q PFM++GMPRPVRA  AE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLK
          MF D+P KPGR + F W++ +DPDF+ A+++KR+ ++H AE +F+LK
Subjt:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLK

AT1G05970.2 RNA-binding (RRM/RBD/RNP motifs) family protein

2.8e-37

49.66

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Query:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE
        M +  +  Y KF E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPNY  P       LVEM++ +  ++VIS ++Q PFM++GMPRPVRA  AE
Subjt:  MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAE

Query:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLK
          MF D+P KPGR + F W++ +DPDF+ A+++KR+ ++H AE +F+LK
Subjt:  VEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLK

Sequences

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CDS sequence

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TCCCTCTCTTCCTCCCTGTCCAAATTCAATCTTTTTCAGCCACTGGACACCAGCACCACCACCTCTCACCTTCCATTACTCAAAGCCCCACTCCCGATTTTCAGTTCTAC
TGGCTCATGCCCCTCGCTTTCCGCTGATCATTTCGTTTCTCCTCTTCGGACTGATCCCTCTTTATCATTCCACATGGGATCAGCTACGGATGAGCAATATGCTAAGTTTG
AGGAGAAGGTAAAACGGACTGTCTATGTTGATAATCTCTCTCCCCAAGTGACTGAGCCTGTCTTGAGAACTGCTTTAGATCAGTTTGGGACTGTTGTTAGTGTCCATTTT
ATTCCAAACTACGCAGAGCCAATTAATAGCTCTCAATGTGCTCTAGTGGAGATGAAGGATTTGAAGGAGGCGAAATCTGTCATCTCGGTGATAGCTCAGTTCCCCTTCAT
GATGTCTGGAATGCCGAGACCAGTGAGGGCGCGCCCTGCCGAAGTGGAAATGTTTGATGATCGCCCTATAAAGCCTGGTAGGAAGATTAGCTTTGTCTGGTTGGAAAAGG
ATGATCCTGATTTTGAAGTGGCAAAGAAAATGAAGCGTGTTACTCAGAGACATGTCGCTGAAGCTGCATTCTTGCTCAAGGCATGA

mRNA sequence

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Protein sequence

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SLSSSLSKFNLFQPLDTSTTTSHLPLLKAPLPIFSSTGSCPSLSADHFVSPLRTDPSLSFHMGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHF
IPNYAEPINSSQCALVEMKDLKEAKSVISVIAQFPFMMSGMPRPVRARPAEVEMFDDRPIKPGRKISFVWLEKDDPDFEVAKKMKRVTQRHVAEAAFLLKA

Spg013732 (gene) of Sponge gourd (cylindrica) v1 genome