; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg013749 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg013749
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold3:31724501..31728369
RNA-Seq ExpressionSpg013749
SyntenySpg013749
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021753633.1 uncharacterized protein LOC110719026 [Chenopodium quinoa]2.2e-1027.52Show/hide
Query:  IISIPLSQNDVSDEIIWNLDPKDVFSVKSAYYLAY---------------------------QISSI----------------------PPSCNHLKMNV
        +I+IP+S    SD + W+L+ K  FSVKSAY+  +                           ++S                         P+   LK+NV
Subjt:  IISIPLSQNDVSDEIIWNLDPKDVFSVKSAYYLAY---------------------------QISSI----------------------PPSCNHLKMNV

Query:  DVFWNEDLAIGGVGWIFRDFLGSPIGIGCNQMIRKWSIKTLEMVAIKEGLRAFLVAGKNESSLLIVEADASEVIKALNVECEELSESKVVLADVEMLASR
        D  +  +LA  G+G + RD +G  + +G  Q+   W ++  E  AI+ GLR     G  +   L+VE+D  +VI+AL  +  +LSE  +++ D+ +L S 
Subjt:  DVFWNEDLAIGGVGWIFRDFLGSPIGIGCNQMIRKWSIKTLEMVAIKEGLRAFLVAGKNESSLLIVEADASEVIKALNVECEELSESKVVLADVEMLASR

Query:  ASVISFVKCPKAGNKVAH
           + +    + GNKVAH
Subjt:  ASVISFVKCPKAGNKVAH

XP_021808158.1 uncharacterized protein LOC110751913 [Prunus avium]2.7e-0834.85Show/hide
Query:  PPSCNHLKMNVDVFWNEDLAIGGVGWIFRDFLGSPIGIGCNQMIRKWSIKTLEMVAIKEGLRAFLVAGKNESSLLIVEADASEVIKALNVECEELSESKV
        PPS   LK+N DV W   L  GGVGW+ RD  G  +  G    +R  S   +E++AI+  L A       + + ++VE+D    I  LN +    S+ + 
Subjt:  PPSCNHLKMNVDVFWNEDLAIGGVGWIFRDFLGSPIGIGCNQMIRKWSIKTLEMVAIKEGLRAFLVAGKNESSLLIVEADASEVIKALNVECEELSESKV

Query:  VLADVEMLASRASVISFVKCPKAGNKVAHNLA
        ++ D++ L +  S +SFV  PK+ N+VAH +A
Subjt:  VLADVEMLASRASVISFVKCPKAGNKVAHNLA

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.3e-1033.33Show/hide
Query:  PPSCNHLKMNVDVFWNEDLAIGGVGWIFRDFLGSPIGIGCNQMIRKWSIKTLEMVAIKEGLRAFLVAGKNESSLLIVEADASEVIKALNVECEELSESKV
        PP+ N  K+N +  W  D   GG+GWI RD  G  I   C  +  + +I  LE++AI EGLRA     +     + +E+D+ E I  L+ +C++ +E   
Subjt:  PPSCNHLKMNVDVFWNEDLAIGGVGWIFRDFLGSPIGIGCNQMIRKWSIKTLEMVAIKEGLRAFLVAGKNESSLLIVEADASEVIKALNVECEELSESKV

Query:  VLADVEMLASRASVISFVKCPKAGNKVAHNLARLA
        +L ++  +     ++S     +  NKVAH LAR A
Subjt:  VLADVEMLASRASVISFVKCPKAGNKVAHNLARLA

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]2.9e-1032.86Show/hide
Query:  PPSCNHLKMNVDVFWNEDLAIGGVGWIFRDFLGSPIGIGCNQMIRKWSIKTLEMVAIKEGLRAF-----LVAGKNESSLLIVEADASEVIKALNVECEEL
        PP+ N  K+N D  W  D   GG+GWI RD  G  I   C  +  + +I  LE++AI EGLRA          +     + +E+D+ E I  L+ +C++ 
Subjt:  PPSCNHLKMNVDVFWNEDLAIGGVGWIFRDFLGSPIGIGCNQMIRKWSIKTLEMVAIKEGLRAF-----LVAGKNESSLLIVEADASEVIKALNVECEEL

Query:  SESKVVLADVEMLASRASVISFVKCPKAGNKVAHNLARLA
        +E   +L ++  +     ++S     +  NKVAH+LAR A
Subjt:  SESKVVLADVEMLASRASVISFVKCPKAGNKVAHNLARLA

XP_023887146.1 uncharacterized protein LOC111999255 [Quercus suber]1.3e-0734.56Show/hide
Query:  IPPSCNHLKMNVDVFWNEDLAIGGVGWIFRDFLGSPIGIGCNQMIRKWSIKTLEMVAIKEGLRAFLVAGKNESSLLIVEADASEVIKALNVECEELSESK
        +PP  N +K+N D     DL+  G+G I R+ LG  +    + +    S++ +E++A +  L      G N    +IVE D+  VIKAL+      S   
Subjt:  IPPSCNHLKMNVDVFWNEDLAIGGVGWIFRDFLGSPIGIGCNQMIRKWSIKTLEMVAIKEGLRAFLVAGKNESSLLIVEADASEVIKALNVECEELSESK

Query:  VVLADVEMLASRASVISFVKCPKAGNKVAHNLARLA
         ++ DV++LAS    +SF    + GN+VAH LARLA
Subjt:  VVLADVEMLASRASVISFVKCPKAGNKVAHNLARLA

TrEMBL top hitse value%identityAlignment
A0A443NDZ3 LINE-1 reverse transcriptase isogeny3.2e-0728.88Show/hide
Query:  IISIPLSQNDVSDEIIWNLDPKDVFSVKSAYYLAYQISSIPP--------SC-----NHLKMNVDVFWNEDLAIGGVGWIFRDFLGSPIGIGCNQMIRKW
        I +IPLS     D +IWN +  D++SVKS Y +A ++  +          SC       +K   D     D    GVG + RDF G  I           
Subjt:  IISIPLSQNDVSDEIIWNLDPKDVFSVKSAYYLAYQISSIPP--------SC-----NHLKMNVDVFWNEDLAIGGVGWIFRDFLGSPIGIGCNQMIRKW

Query:  SIKTLEMVAIKEGLRAFLVAGKNESSLLIVEADASEVIKALNVECEELSE-SKVVLADVEMLASRASVISFVKCPKAGNKVAHNLAR
          K  E + ++E L      G +    +I E DA EV+ A+     ++SE   ++ A + +L++    + F+K  +  N+VAH LAR
Subjt:  SIKTLEMVAIKEGLRAFLVAGKNESSLLIVEADASEVIKALNVECEELSE-SKVVLADVEMLASRASVISFVKCPKAGNKVAHNLAR

A0A4Y1R838 Ribonuclease H-like superfamily protein1.1e-0735.51Show/hide
Query:  SSIPPSCNHLKMNVDVFWNEDLAIGGVGWIFRDFLGSPIGIGCNQMIRKWSIKTLEMVAIKEGLRAFLVAGKNESSLLIVEADASEVIKALNVECEELSE
        SS PP    +K+N D  W      GGVGW+ RD +G  I  G    +R  S    E  A++E L   L  G ++   + VE+D+  +IK LN E     E
Subjt:  SSIPPSCNHLKMNVDVFWNEDLAIGGVGWIFRDFLGSPIGIGCNQMIRKWSIKTLEMVAIKEGLRAFLVAGKNESSLLIVEADASEVIKALNVECEELSE

Query:  SKVVLADVEMLASRASVISFVKCPKAGNKVAHNLARLA
         + +L DV  L+ RA  + F+  P+  N+ AHN+A  A
Subjt:  SKVVLADVEMLASRASVISFVKCPKAGNKVAHNLARLA

A0A6J1CP26 uncharacterized protein LOC1110134126.2e-1133.33Show/hide
Query:  PPSCNHLKMNVDVFWNEDLAIGGVGWIFRDFLGSPIGIGCNQMIRKWSIKTLEMVAIKEGLRAFLVAGKNESSLLIVEADASEVIKALNVECEELSESKV
        PP+ N  K+N +  W  D   GG+GWI RD  G  I   C  +  + +I  LE++AI EGLRA     +     + +E+D+ E I  L+ +C++ +E   
Subjt:  PPSCNHLKMNVDVFWNEDLAIGGVGWIFRDFLGSPIGIGCNQMIRKWSIKTLEMVAIKEGLRAFLVAGKNESSLLIVEADASEVIKALNVECEELSESKV

Query:  VLADVEMLASRASVISFVKCPKAGNKVAHNLARLA
        +L ++  +     ++S     +  NKVAH LAR A
Subjt:  VLADVEMLASRASVISFVKCPKAGNKVAHNLARLA

A0A6J1DSV1 uncharacterized protein LOC1110236081.4e-1032.86Show/hide
Query:  PPSCNHLKMNVDVFWNEDLAIGGVGWIFRDFLGSPIGIGCNQMIRKWSIKTLEMVAIKEGLRAF-----LVAGKNESSLLIVEADASEVIKALNVECEEL
        PP+ N  K+N D  W  D   GG+GWI RD  G  I   C  +  + +I  LE++AI EGLRA          +     + +E+D+ E I  L+ +C++ 
Subjt:  PPSCNHLKMNVDVFWNEDLAIGGVGWIFRDFLGSPIGIGCNQMIRKWSIKTLEMVAIKEGLRAF-----LVAGKNESSLLIVEADASEVIKALNVECEEL

Query:  SESKVVLADVEMLASRASVISFVKCPKAGNKVAHNLARLA
        +E   +L ++  +     ++S     +  NKVAH+LAR A
Subjt:  SESKVVLADVEMLASRASVISFVKCPKAGNKVAHNLARLA

A0A6P5S2T0 uncharacterized protein LOC1107519131.3e-0834.85Show/hide
Query:  PPSCNHLKMNVDVFWNEDLAIGGVGWIFRDFLGSPIGIGCNQMIRKWSIKTLEMVAIKEGLRAFLVAGKNESSLLIVEADASEVIKALNVECEELSESKV
        PPS   LK+N DV W   L  GGVGW+ RD  G  +  G    +R  S   +E++AI+  L A       + + ++VE+D    I  LN +    S+ + 
Subjt:  PPSCNHLKMNVDVFWNEDLAIGGVGWIFRDFLGSPIGIGCNQMIRKWSIKTLEMVAIKEGLRAFLVAGKNESSLLIVEADASEVIKALNVECEELSESKV

Query:  VLADVEMLASRASVISFVKCPKAGNKVAHNLA
        ++ D++ L +  S +SFV  PK+ N+VAH +A
Subjt:  VLADVEMLASRASVISFVKCPKAGNKVAHNLA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.1e-0726.52Show/hide
Query:  PSCNHLKMNVDVFWNEDLAIGGVGWIFRDFLGSPIGIGCNQMIRKWSIKTLEMVAIKEGLRAFLVAGKNESSLLIVEADASEVIKALNVECEELSESKVV
        P    +K N D  W  +    G+GWI R+  G  + +G   + R  ++   E+ A++    A L   +     +I E+DA  ++  LN + +     +  
Subjt:  PSCNHLKMNVDVFWNEDLAIGGVGWIFRDFLGSPIGIGCNQMIRKWSIKTLEMVAIKEGLRAFLVAGKNESSLLIVEADASEVIKALNVECEELSESKVV

Query:  LADVEMLASRASVISFVKCPKAGNKVAHNLAR
        L D++ L      + F   P+ GNKVA  +AR
Subjt:  LADVEMLASRASVISFVKCPKAGNKVAHNLAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCCAGACTCATTATTAGCCTTGCTGCTGGGTGGTTTTCGTGGATCAAGTCTCGAGGTTTTTGGACTTGCTCGTGACGATGCTCGTAACGGTGTTGGTTTCTCAAA
CCAAGAGTCAGAGCATTTCCCTCACGCAAGTTACTGTGGTATGCGGTTTAAGGAAGTGCCAATGGTGGCGTTAGTGTCGTCTCATAGCCAATCTAGGAATGATGCCTATT
TGAAGTTGGTGGTTGAAACTTACCAGCTAAGTGGGTTTAAGTTGGTGAAGTTGCTGATGAAGCTTCCTGCAGATATAATCTCCATTCCTTTAAGCCAAAACGATGTTAGT
GATGAAATCATTTGGAATCTCGACCCCAAAGATGTTTTTAGTGTGAAAAGTGCCTATTACCTTGCTTATCAAATTAGCTCGATCCCTCCCTCGTGCAATCATTTGAAGAT
GAATGTGGATGTCTTTTGGAACGAAGATCTTGCGATAGGCGGCGTTGGTTGGATCTTTCGGGATTTCCTTGGGTCACCAATTGGGATTGGCTGTAATCAAATGATCAGAA
AATGGTCAATAAAAACCCTTGAGATGGTGGCAATCAAAGAAGGGTTGAGAGCTTTTCTAGTCGCGGGGAAGAATGAGAGTTCTTTGTTGATTGTGGAAGCTGATGCCTCG
GAAGTGATCAAGGCGCTGAACGTGGAATGCGAAGAGTTATCAGAATCTAAAGTTGTTCTTGCTGATGTTGAAATGCTAGCGTCTAGGGCTAGTGTCATCTCCTTCGTGAA
ATGCCCTAAAGCAGGGAACAAGGTCGCACATAATCTCGCGCGTTTGGCGACTGGTGGAGTCCTCGTCGTCTGTTGTTGTCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTCCAGACTCATTATTAGCCTTGCTGCTGGGTGGTTTTCGTGGATCAAGTCTCGAGGTTTTTGGACTTGCTCGTGACGATGCTCGTAACGGTGTTGGTTTCTCAAA
CCAAGAGTCAGAGCATTTCCCTCACGCAAGTTACTGTGGTATGCGGTTTAAGGAAGTGCCAATGGTGGCGTTAGTGTCGTCTCATAGCCAATCTAGGAATGATGCCTATT
TGAAGTTGGTGGTTGAAACTTACCAGCTAAGTGGGTTTAAGTTGGTGAAGTTGCTGATGAAGCTTCCTGCAGATATAATCTCCATTCCTTTAAGCCAAAACGATGTTAGT
GATGAAATCATTTGGAATCTCGACCCCAAAGATGTTTTTAGTGTGAAAAGTGCCTATTACCTTGCTTATCAAATTAGCTCGATCCCTCCCTCGTGCAATCATTTGAAGAT
GAATGTGGATGTCTTTTGGAACGAAGATCTTGCGATAGGCGGCGTTGGTTGGATCTTTCGGGATTTCCTTGGGTCACCAATTGGGATTGGCTGTAATCAAATGATCAGAA
AATGGTCAATAAAAACCCTTGAGATGGTGGCAATCAAAGAAGGGTTGAGAGCTTTTCTAGTCGCGGGGAAGAATGAGAGTTCTTTGTTGATTGTGGAAGCTGATGCCTCG
GAAGTGATCAAGGCGCTGAACGTGGAATGCGAAGAGTTATCAGAATCTAAAGTTGTTCTTGCTGATGTTGAAATGCTAGCGTCTAGGGCTAGTGTCATCTCCTTCGTGAA
ATGCCCTAAAGCAGGGAACAAGGTCGCACATAATCTCGCGCGTTTGGCGACTGGTGGAGTCCTCGTCGTCTGTTGTTGTCAATGA
Protein sequenceShow/hide protein sequence
MSPDSLLALLLGGFRGSSLEVFGLARDDARNGVGFSNQESEHFPHASYCGMRFKEVPMVALVSSHSQSRNDAYLKLVVETYQLSGFKLVKLLMKLPADIISIPLSQNDVS
DEIIWNLDPKDVFSVKSAYYLAYQISSIPPSCNHLKMNVDVFWNEDLAIGGVGWIFRDFLGSPIGIGCNQMIRKWSIKTLEMVAIKEGLRAFLVAGKNESSLLIVEADAS
EVIKALNVECEELSESKVVLADVEMLASRASVISFVKCPKAGNKVAHNLARLATGGVLVVCCCQ