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Spg013829 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg013829
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionsister chromatid cohesion protein PDS5 homolog A
Genome locationscaffold3:43768311..43769847
RNA-Seq ExpressionSpg013829
SyntenySpg013829
Gene Ontology termsGO:0007064 - mitotic sister chromatid cohesion (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR039776 - Sister chromatid cohesion protein Pds5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB5568601.1 hypothetical protein DKX38_002394 [Salix brachista]4.2e-0879.49Show/hide
Query:  VKILETVARCKCCVIMLDIECNDLVLEMSNTFFSTLSTI
        VK+LETVARCKCCVIMLD++C+DLVLEM N FFS++STI
Subjt:  VKILETVARCKCCVIMLDIECNDLVLEMSNTFFSTLSTI

XP_022937151.1 sister chromatid cohesion protein PDS5 homolog A-like isoform X1 [Cucurbita moschata]5.4e-0891.67Show/hide
Query:  VKILETVARCKCCVIMLDIECNDLVLEMSNTFFSTL
        VKILETVARCKCCVIMLDI CNDLVLEM NTFFS L
Subjt:  VKILETVARCKCCVIMLDIECNDLVLEMSNTFFSTL

XP_022937155.1 sister chromatid cohesion protein PDS5 homolog A-like isoform X3 [Cucurbita moschata]5.4e-0891.67Show/hide
Query:  VKILETVARCKCCVIMLDIECNDLVLEMSNTFFSTL
        VKILETVARCKCCVIMLDI CNDLVLEM NTFFS L
Subjt:  VKILETVARCKCCVIMLDIECNDLVLEMSNTFFSTL

XP_023536012.1 sister chromatid cohesion protein PDS5 homolog A-like isoform X2 [Cucurbita pepo subsp. pepo]5.4e-0891.67Show/hide
Query:  VKILETVARCKCCVIMLDIECNDLVLEMSNTFFSTL
        VKILETVARCKCCVIMLDI CNDLVLEM NTFFS L
Subjt:  VKILETVARCKCCVIMLDIECNDLVLEMSNTFFSTL

XP_023536017.1 sister chromatid cohesion protein PDS5 homolog A-like isoform X5 [Cucurbita pepo subsp. pepo]5.4e-0891.67Show/hide
Query:  VKILETVARCKCCVIMLDIECNDLVLEMSNTFFSTL
        VKILETVARCKCCVIMLDI CNDLVLEM NTFFS L
Subjt:  VKILETVARCKCCVIMLDIECNDLVLEMSNTFFSTL

TrEMBL top hitse value%identityAlignment
A0A5N5NPW7 Uncharacterized protein2.0e-0879.49Show/hide
Query:  VKILETVARCKCCVIMLDIECNDLVLEMSNTFFSTLSTI
        VK+LETVARCKCCVIMLD++C+DLVLEM N FFS++STI
Subjt:  VKILETVARCKCCVIMLDIECNDLVLEMSNTFFSTLSTI

A0A6J1IGF7 sister chromatid cohesion protein PDS5 homolog A-like isoform X52.6e-0891.67Show/hide
Query:  VKILETVARCKCCVIMLDIECNDLVLEMSNTFFSTL
        VKILETVARCKCCVIMLDI CNDLVLEM NTFFS L
Subjt:  VKILETVARCKCCVIMLDIECNDLVLEMSNTFFSTL

A0A6J1IHJ2 sister chromatid cohesion protein PDS5 homolog A-like isoform X22.6e-0891.67Show/hide
Query:  VKILETVARCKCCVIMLDIECNDLVLEMSNTFFSTL
        VKILETVARCKCCVIMLDI CNDLVLEM NTFFS L
Subjt:  VKILETVARCKCCVIMLDIECNDLVLEMSNTFFSTL

A0A6J1IK50 sister chromatid cohesion protein PDS5 homolog A-like isoform X42.6e-0891.67Show/hide
Query:  VKILETVARCKCCVIMLDIECNDLVLEMSNTFFSTL
        VKILETVARCKCCVIMLDI CNDLVLEM NTFFS L
Subjt:  VKILETVARCKCCVIMLDIECNDLVLEMSNTFFSTL

A0A6J1IMW1 sister chromatid cohesion protein PDS5 homolog A-like isoform X12.6e-0891.67Show/hide
Query:  VKILETVARCKCCVIMLDIECNDLVLEMSNTFFSTL
        VKILETVARCKCCVIMLDI CNDLVLEM NTFFS L
Subjt:  VKILETVARCKCCVIMLDIECNDLVLEMSNTFFSTL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G77600.1 ARM repeat superfamily protein2.7e-0566.67Show/hide
Query:  KILETVARCKCCVIMLDIECNDLVLEMSNTFFS
        KILETV+R K C++MLD +C DLV EM N FFS
Subjt:  KILETVARCKCCVIMLDIECNDLVLEMSNTFFS

AT1G77600.2 ARM repeat superfamily protein2.7e-0566.67Show/hide
Query:  KILETVARCKCCVIMLDIECNDLVLEMSNTFFS
        KILETV+R K C++MLD +C DLV EM N FFS
Subjt:  KILETVARCKCCVIMLDIECNDLVLEMSNTFFS

AT1G77600.3 ARM repeat superfamily protein2.7e-0566.67Show/hide
Query:  KILETVARCKCCVIMLDIECNDLVLEMSNTFFS
        KILETV+R K C++MLD +C DLV EM N FFS
Subjt:  KILETVARCKCCVIMLDIECNDLVLEMSNTFFS

AT5G47690.1 binding1.7e-0462.5Show/hide
Query:  VKILETVARCKCCVIMLDIECNDLVLEMSNTF
        V ILETVA+ + CV+MLD+EC+DLV E+  TF
Subjt:  VKILETVARCKCCVIMLDIECNDLVLEMSNTF

AT5G47690.2 binding1.7e-0462.5Show/hide
Query:  VKILETVARCKCCVIMLDIECNDLVLEMSNTF
        V ILETVA+ + CV+MLD+EC+DLV E+  TF
Subjt:  VKILETVARCKCCVIMLDIECNDLVLEMSNTF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTAAAATACTAGAGACAGTGGCACGATGTAAATGTTGTGTGATAATGCTTGACATTGAATGCAACGACTTAGTGTTGGAGATGTCTAATACATTTTTCTCTACTTTGAG
TACAATCGATCCCGCTCGGAAAGAAGCGTGCATTCGCGCTTTCAGACAACGGGTCGAGGATTTGGAGGGGAGGCAGCAAGCGCTTCGGGCGGAGTAG
mRNA sequenceShow/hide mRNA sequence
GTTAAAATACTAGAGACAGTGGCACGATGTAAATGTTGTGTGATAATGCTTGACATTGAATGCAACGACTTAGTGTTGGAGATGTCTAATACATTTTTCTCTACTTTGAG
TACAATCGATCCCGCTCGGAAAGAAGCGTGCATTCGCGCTTTCAGACAACGGGTCGAGGATTTGGAGGGGAGGCAGCAAGCGCTTCGGGCGGAGTAG
Protein sequenceShow/hide protein sequence
VKILETVARCKCCVIMLDIECNDLVLEMSNTFFSTLSTIDPARKEACIRAFRQRVEDLEGRQQALRAE