; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg013873 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg013873
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein WHI4
Genome locationscaffold3:48930395..48934475
RNA-Seq ExpressionSpg013873
SyntenySpg013873
Gene Ontology termsGO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7025857.1 RNA-binding protein with multiple splicing 2 [Cucurbita argyrosperma subsp. argyrosperma]1.0e-13994.7Show/hide
Query:  MAHQPYDPYYLYHQPDPNYTDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYHQPD NY+DR+NINTLFISGLPDDVK REIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYTDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
        ELARSNSRRKHKPGGGAYVVIDKRK++DSNAQETSS+DGGSEPDEPSK+TEQSNEAVV PG  N  SAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE

Query:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
        VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKV+EELQGSMLPSSDRGGMHIEYARSKMRKS
Subjt:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS

XP_022964622.1 protein WHI4 [Cucurbita moschata]2.1e-14095.08Show/hide
Query:  MAHQPYDPYYLYHQPDPNYTDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYHQPD NY+DR+NINTLFISGLPDDVK REIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYTDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
        ELARSNSRRKHKPGGGAYVVIDKRK++DSNAQETSS+DGGSEPDEPSK+TEQSNEAVV PG  N LSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE

Query:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
        VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKV+EELQGSMLPSSDRGGMHIEYARSKMRKS
Subjt:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS

XP_023000385.1 U2 small nuclear ribonucleoprotein B'' 2 [Cucurbita maxima]8.0e-14095.08Show/hide
Query:  MAHQPYDPYYLYHQPDPNYTDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQ YDPYYLYHQPD NY+DR+NINTLFISGLPDDVK REIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYTDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
        ELARSNSRRKHKPGGGAYVVIDKRK++DSNAQETSS+DGGSEPDEPSK+TEQSNEAVV PG  N LSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE

Query:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
        VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
Subjt:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS

XP_023513427.1 U2 small nuclear ribonucleoprotein B'' 2 [Cucurbita pepo subsp. pepo]9.4e-14195.45Show/hide
Query:  MAHQPYDPYYLYHQPDPNYTDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYHQPD NY+DR+NINTLFISGLPDDVK REIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYTDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
        ELARSNSRRKHKPGGGAYVVIDKRK++DSNAQETSS+DGGSEPDEPSK+TEQSNEAVV PG  N LSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE

Query:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
        VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
Subjt:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS

XP_038898771.1 protein WHI4 isoform X1 [Benincasa hispida]3.4e-13893.56Show/hide
Query:  MAHQPYDPYYLYHQPDPNYTDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLY+QPDP Y+DRSNINTLFISGLPDDVK REIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYTDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
        ELARSNSRRKHKPGGGAYVVIDKRK+TD+N+QETSSDDGGSEPDEPSK+ EQS EA+VTP   NALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE

Query:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
        VL KYPGFNVLKLRAKSGMPVAFADFE+IEQASKVMEELQGS+LPSSDRGGMHIEYARSKMRKS
Subjt:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS

TrEMBL top hitse value%identityAlignment
A0A0A0K772 Uncharacterized protein1.1e-13792.8Show/hide
Query:  MAHQPYDPYYLYHQPDPNYTDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAH PYDPYYLY+QPDP Y++RSNINTLFISGLPDDVK REIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYTDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
        ELARSNSRRKHKPGGGAYVVIDKRK+TD+N+QETSSDDGGSEPDEPSK+ +QSNEAVVTP   NA+SAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE

Query:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
        VL KYPGFNVLKLRAKSGMPVAFADFE+IEQASKVMEELQGS+LPSSDRGGMHIEYARSKMRKS
Subjt:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS

A0A5A7V0X3 Protein WHI48.1e-13892.8Show/hide
Query:  MAHQPYDPYYLYHQPDPNYTDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAH PYDPYYLY+QPDP Y+DRSNINTLFISGLPDDVK REIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYTDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
        ELARSNSRRKHKPGGGAYVVIDKRK+TD+N+QETSSDDGGSEPDEPSK+ +QSNEAVVTP   +A+SAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE

Query:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
        VL KYPGFNVLKLRAKSGMPVAFADFE+IEQASKVMEELQGS+LPSSDRGGMHIEYARSKMRKS
Subjt:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS

A0A6J1D3Z3 uncharacterized protein LOC111017052 isoform X11.8e-13793.18Show/hide
Query:  MAHQPYDPYYLYHQPDPNYTDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYHQPDPNY+DRSNINTLFISGLPDDVK REIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYTDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
        ELARSNSRRKHKPGGGAYVVIDKRK++D NAQETSSDDGGSEPDEPSK+TE+S+EAV+TP   NALS PYEHHEK DGG CSTLFIANLGPNCNEDEL E
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE

Query:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
        VLSKYPGFNVLKLRAKSGMPVAFADFEE+EQA KVMEELQGSMLPSSDRGGMHIEYARSKMRKS
Subjt:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS

A0A6J1HI97 protein WHI41.0e-14095.08Show/hide
Query:  MAHQPYDPYYLYHQPDPNYTDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQPYDPYYLYHQPD NY+DR+NINTLFISGLPDDVK REIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYTDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
        ELARSNSRRKHKPGGGAYVVIDKRK++DSNAQETSS+DGGSEPDEPSK+TEQSNEAVV PG  N LSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE

Query:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
        VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKV+EELQGSMLPSSDRGGMHIEYARSKMRKS
Subjt:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS

A0A6J1KI66 U2 small nuclear ribonucleoprotein B'' 23.9e-14095.08Show/hide
Query:  MAHQPYDPYYLYHQPDPNYTDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
        MAHQ YDPYYLYHQPD NY+DR+NINTLFISGLPDDVK REIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI
Subjt:  MAHQPYDPYYLYHQPDPNYTDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHI

Query:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
        ELARSNSRRKHKPGGGAYVVIDKRK++DSNAQETSS+DGGSEPDEPSK+TEQSNEAVV PG  N LSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE
Subjt:  ELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKE

Query:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
        VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS
Subjt:  VLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS

SwissProt top hitse value%identityAlignment
Q6DH13 RNA-binding protein, mRNA-processing factor 2a5.4e-1444.05Show/hide
Query:  INTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        + TLF+SGLP D+KPRE++ LFR   G++   +K T +  Q V F TF +   A  A +ALNG++FDP+S   L +E A++N++
Subjt:  INTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q6ZRY4 RNA-binding protein with multiple splicing 23.5e-1342.86Show/hide
Query:  INTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        + TLF+SGLP D+KPRE++ LFR   G++   +K T R  Q V F  F +   A  A +ALNG++FDP++   L +E A++N++
Subjt:  INTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q8VC52 RNA-binding protein with multiple splicing 23.5e-1342.86Show/hide
Query:  INTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        + TLF+SGLP D+KPRE++ LFR   G++   +K T R  Q V F  F +   A  A +ALNG++FDP++   L +E A++N++
Subjt:  INTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q9W6I1 RNA-binding protein with multiple splicing 21.6e-1342.86Show/hide
Query:  INTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        + TLF+SGLP D+KPRE++ LFR   G++   +K T +  Q V F TF +   A  A +ALNG++FDP++   L +E A++N++
Subjt:  INTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Q9YGP5 RNA-binding protein with multiple splicing 23.2e-1441.76Show/hide
Query:  NYTDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR
        N      + TLF+SGLP D+KPRE++ LFR   G++   +K T +  Q V F TF N   A  A +ALNG++FDP++   L +E A++N++
Subjt:  NYTDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR

Arabidopsis top hitse value%identityAlignment
AT2G42240.1 RNA-binding (RRM/RBD/RNP motifs) family protein4.1e-4139.02Show/hide
Query:  RSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVI
        R  + TLF++GLP+DVKPREI+NLFR  PG+++  L+ +  G +  AFA F + QSAV  +HALNG+ FD +  S LHI+LA+SN + K       +  +
Subjt:  RSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVI

Query:  DKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALS-----APYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAK
         K K     +  T+++ G      P   +   N    +P     ++     AP          PC TLFIAN+GPNC E EL +V S+  GF  LK++  
Subjt:  DKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALS-----APYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAK

Query:  SGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGG-MHIEYARSKM
         G PVAF DF+++  +S+ +  LQG++L SS  G  + ++YARS+M
Subjt:  SGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGG-MHIEYARSKM

AT2G42240.2 RNA-binding (RRM/RBD/RNP motifs) family protein6.5e-3938.89Show/hide
Query:  RSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVI
        R  + TLF++GLP+DVKPREI+NLFR  PG+++  L+ +  G +  AFA F + QSAV  +HALNG+ FD +  S LHI+LA+SN + K       +  +
Subjt:  RSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVI

Query:  DKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALS-----APYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAK
         K K     +  T+++ G      P   +   N    +P     ++     AP          PC TLFIAN+GPNC E EL +V S+  GF  LK++  
Subjt:  DKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALS-----APYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAK

Query:  SGMPVAFADFEEIEQASKVMEELQGSMLPSSDRG
         G PVAF DF+++  +S+ +  LQG++L SS  G
Subjt:  SGMPVAFADFEEIEQASKVMEELQGSMLPSSDRG

AT2G42240.3 RNA-binding (RRM/RBD/RNP motifs) family protein1.3e-3938.46Show/hide
Query:  RSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVI
        R  + TLF++GLP+DVKPREI+NLFR  PG+++  L+ +  G +  AFA F + QSAV  +HALNG+ FD +  S LHI+LA+SN + K       +  +
Subjt:  RSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVI

Query:  DKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALS-----APYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAK
         K K     +  T+++ G      P   +   N    +P     ++     AP          PC TLFIAN+GPNC E EL +V S+  GF  LK++  
Subjt:  DKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALS-----APYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAK

Query:  SGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRK
         G PVAF DF+++  +S+ +  LQG++L SS  G +    +R  MRK
Subjt:  SGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRK

AT3G13700.1 RNA-binding (RRM/RBD/RNP motifs) family protein7.6e-8056.46Show/hide
Query:  HQPYDPYYLY-------HQPD--PNYTDRSN-INTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQ------------------VVAFATFYN
        HQPYDP+Y+Y       H P   P   D    INTLF+SGLP+DVK REIHNLFRRR GF+SCQLKYTGRG+Q                  VVAFATF +
Subjt:  HQPYDPYYLY-------HQPD--PNYTDRSN-INTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQ------------------VVAFATFYN

Query:  HQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDE---------PSKRTEQSNEAVVTPGPRNA
        H+ A+ A++ LNGVKFDPQ+GS LHIELARSNSRRK +PG G YVVID R +  S +Q+  SD+G S+PDE         P +     +EA   P  + A
Subjt:  HQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDE---------PSKRTEQSNEAVVTPGPRNA

Query:  LSAPYEHHEKNDGG----PCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE
         SA     + ++GG     CSTLFIANLGPNC EDELK++LS+YPGF++LK+RA+ GMPVAFADFEEIEQA+  M  LQG++L SSDRGGMHIE
Subjt:  LSAPYEHHEKNDGG----PCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIE

AT3G13700.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.3e-8761.27Show/hide
Query:  HQPYDPYYLY-------HQPD--PNYTDRSN-INTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDP
        HQPYDP+Y+Y       H P   P   D    INTLF+SGLP+DVK REIHNLFRRR GF+SCQLKYTGRG+QVVAFATF +H+ A+ A++ LNGVKFDP
Subjt:  HQPYDPYYLY-------HQPD--PNYTDRSN-INTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDP

Query:  QSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDE---------PSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGG----
        Q+GS LHIELARSNSRRK +PG G YVVID R +  S +Q+  SD+G S+PDE         P +     +EA   P  + A SA     + ++GG    
Subjt:  QSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDE---------PSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGG----

Query:  PCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRK
         CSTLFIANLGPNC EDELK++LS+YPGF++LK+RA+ GMPVAFADFEEIEQA+  M  LQG++L SSDRGGMHIEYARSKMRK
Subjt:  PCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCACCAGCCTTACGATCCTTACTATCTCTATCATCAACCGGACCCTAACTACACTGACCGGAGCAACATCAACACGCTCTTCATCTCCGGTCTCCCTGACGATGT
CAAGCCTCGCGAGATTCACAACCTTTTCCGCCGCCGCCCGGGATTCGACTCTTGTCAGCTCAAGTACACTGGACGCGGCAACCAGGTTGTGGCATTTGCCACGTTTTACA
ATCACCAATCAGCTGTGACGGCGCTTCATGCATTAAATGGTGTCAAATTTGATCCACAAAGTGGATCAGTTCTGCATATTGAACTCGCTAGGTCAAACTCTAGAAGAAAA
CATAAACCAGGTGGTGGAGCATATGTTGTGATAGATAAAAGGAAAAGAACCGACTCCAATGCCCAGGAAACATCAAGTGATGATGGAGGCAGTGAACCGGATGAACCATC
AAAAAGGACCGAACAAAGCAATGAGGCTGTGGTGACTCCTGGTCCTCGTAATGCTTTATCGGCTCCATATGAGCATCATGAAAAGAATGATGGTGGACCATGCTCCACTT
TGTTTATCGCAAATCTGGGTCCAAACTGCAATGAAGATGAACTGAAGGAAGTCTTGTCCAAATATCCTGGATTCAACGTGCTCAAACTGCGTGCCAAAAGTGGAATGCCG
GTTGCATTTGCTGATTTTGAGGAAATTGAACAAGCTAGCAAGGTTATGGAGGAACTTCAAGGCAGCATGCTACCATCATCAGACCGTGGTGGCATGCATATAGAGTACGC
ACGGTCTAAAATGAGGAAGTCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTCACCAGCCTTACGATCCTTACTATCTCTATCATCAACCGGACCCTAACTACACTGACCGGAGCAACATCAACACGCTCTTCATCTCCGGTCTCCCTGACGATGT
CAAGCCTCGCGAGATTCACAACCTTTTCCGCCGCCGCCCGGGATTCGACTCTTGTCAGCTCAAGTACACTGGACGCGGCAACCAGGTTGTGGCATTTGCCACGTTTTACA
ATCACCAATCAGCTGTGACGGCGCTTCATGCATTAAATGGTGTCAAATTTGATCCACAAAGTGGATCAGTTCTGCATATTGAACTCGCTAGGTCAAACTCTAGAAGAAAA
CATAAACCAGGTGGTGGAGCATATGTTGTGATAGATAAAAGGAAAAGAACCGACTCCAATGCCCAGGAAACATCAAGTGATGATGGAGGCAGTGAACCGGATGAACCATC
AAAAAGGACCGAACAAAGCAATGAGGCTGTGGTGACTCCTGGTCCTCGTAATGCTTTATCGGCTCCATATGAGCATCATGAAAAGAATGATGGTGGACCATGCTCCACTT
TGTTTATCGCAAATCTGGGTCCAAACTGCAATGAAGATGAACTGAAGGAAGTCTTGTCCAAATATCCTGGATTCAACGTGCTCAAACTGCGTGCCAAAAGTGGAATGCCG
GTTGCATTTGCTGATTTTGAGGAAATTGAACAAGCTAGCAAGGTTATGGAGGAACTTCAAGGCAGCATGCTACCATCATCAGACCGTGGTGGCATGCATATAGAGTACGC
ACGGTCTAAAATGAGGAAGTCTTAG
Protein sequenceShow/hide protein sequence
MAHQPYDPYYLYHQPDPNYTDRSNINTLFISGLPDDVKPREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRK
HKPGGGAYVVIDKRKRTDSNAQETSSDDGGSEPDEPSKRTEQSNEAVVTPGPRNALSAPYEHHEKNDGGPCSTLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMP
VAFADFEEIEQASKVMEELQGSMLPSSDRGGMHIEYARSKMRKS