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Spg013881 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg013881
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein LOW PSII ACCUMULATION 3, chloroplastic
Genome locationscaffold3:47068709..47073723
RNA-Seq ExpressionSpg013881
SyntenySpg013881
Gene Ontology termsNA
InterPro domainsIPR018962 - Domain of unknown function DUF1995
IPR044687 - Protein LOW PSII ACCUMULATION 3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575630.1 Protein LOW PSII ACCUMULATION 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]4.7e-2285.29Show/hide
Query:  YIYASFIILSGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKVSS
        Y  A F    GPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYK ++
Subjt:  YIYASFIILSGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKVSS
KAG7014184.1 Protein LOW PSII ACCUMULATION 3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]4.7e-2285.29Show/hide
Query:  YIYASFIILSGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKVSS
        Y  A F    GPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYK ++
Subjt:  YIYASFIILSGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKVSS
XP_022149990.1 protein LOW PSII ACCUMULATION 3, chloroplastic isoform X1 [Momordica charantia]1.6e-2283.82Show/hide
Query:  YIYASFIILSGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKVSS
        Y  A F +  GPWQVMLKQADNSYAC+AESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYK ++
Subjt:  YIYASFIILSGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKVSS
XP_022149999.1 protein LOW PSII ACCUMULATION 3, chloroplastic isoform X2 [Momordica charantia]1.6e-2283.82Show/hide
Query:  YIYASFIILSGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKVSS
        Y  A F +  GPWQVMLKQADNSYAC+AESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYK ++
Subjt:  YIYASFIILSGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKVSS
XP_022954402.1 protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita moschata]4.7e-2285.29Show/hide
Query:  YIYASFIILSGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKVSS
        Y  A F    GPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYK ++
Subjt:  YIYASFIILSGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKVSS
TrEMBL top hitse value%identityAlignment
A0A0A0KA03 DUF1995 domain-containing protein3.0e-2283.82Show/hide
Query:  YIYASFIILSGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKVSS
        Y  A F   +GPWQVMLKQ+DNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYK ++
Subjt:  YIYASFIILSGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKVSS
A0A5A7UU42 Protein LOW PSII ACCUMULATION 35.1e-2283.82Show/hide
Query:  YIYASFIILSGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKVSS
        Y  A F    GPWQVMLKQ+DNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYK ++
Subjt:  YIYASFIILSGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKVSS
A0A6J1D790 protein LOW PSII ACCUMULATION 3, chloroplastic isoform X17.9e-2383.82Show/hide
Query:  YIYASFIILSGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKVSS
        Y  A F +  GPWQVMLKQADNSYAC+AESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYK ++
Subjt:  YIYASFIILSGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKVSS
A0A6J1D8Q5 protein LOW PSII ACCUMULATION 3, chloroplastic isoform X27.9e-2383.82Show/hide
Query:  YIYASFIILSGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKVSS
        Y  A F +  GPWQVMLKQADNSYAC+AESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYK ++
Subjt:  YIYASFIILSGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKVSS
A0A6J1GQW6 protein LOW PSII ACCUMULATION 3, chloroplastic2.3e-2285.29Show/hide
Query:  YIYASFIILSGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKVSS
        Y  A F    GPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYK ++
Subjt:  YIYASFIILSGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKVSS
SwissProt top hitse value%identityAlignment
Q8H0W0 Protein LPA37.1e-2178.46Show/hide
Query:  YIYASFIILSGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYK
        Y  A F    GPWQVMLKQ D S+ACVAES TRFTLGETK+ELL+VLGLQEE+GSSLEFLRRGYK
Subjt:  YIYASFIILSGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYK
Arabidopsis top hitse value%identityAlignment
AT1G73060.1 Low PSII Accumulation 35.0e-2278.46Show/hide
Query:  YIYASFIILSGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYK
        Y  A F    GPWQVMLKQ D S+ACVAES TRFTLGETK+ELL+VLGLQEE+GSSLEFLRRGYK
Subjt:  YIYASFIILSGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTCATCGGTCAACAATTGGTTCACCAACCACTTTTTTACATCAATCTTTTCTCATTGCCATGGAATATGTGGTCTTTATATCTACATCTATGCATCCTTCATAAT
ACTTTCAGGGCCTTGGCAAGTGATGCTAAAACAAGCAGATAATTCTTATGCTTGCGTTGCAGAGAGTGAGACAAGGTTCACCCTTGGCGAAACAAAAGATGAACTACTAA
GAGTCCTCGGACTACAGGAGGAACAAGGAAGCTCATTAGAATTTCTCCGCAGGGGCTACAAGGTTTCCTCTTCATATCTGTGTTATACCTTTTCTTCTACATGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTCATCGGTCAACAATTGGTTCACCAACCACTTTTTTACATCAATCTTTTCTCATTGCCATGGAATATGTGGTCTTTATATCTACATCTATGCATCCTTCATAAT
ACTTTCAGGGCCTTGGCAAGTGATGCTAAAACAAGCAGATAATTCTTATGCTTGCGTTGCAGAGAGTGAGACAAGGTTCACCCTTGGCGAAACAAAAGATGAACTACTAA
GAGTCCTCGGACTACAGGAGGAACAAGGAAGCTCATTAGAATTTCTCCGCAGGGGCTACAAGGTTTCCTCTTCATATCTGTGTTATACCTTTTCTTCTACATGGTGA
Protein sequenceShow/hide protein sequence
MSSSVNNWFTNHFFTSIFSHCHGICGLYIYIYASFIILSGPWQVMLKQADNSYACVAESETRFTLGETKDELLRVLGLQEEQGSSLEFLRRGYKVSSSYLCYTFSSTW