CuGenDBv2

Gene ID	Spg013907
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Pentatricopeptide repeat-containing protein, putative
Genome location	scaffold3:35918383..35923919
RNA-Seq Expression	Spg013907
Synteny	Spg013907
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0056820.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]

3.4e-25

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Query:  MKPDNHVSVVLIDAFISKQNFSMALNILKETVEIGNVPDPTDKNYVTIRDAIFKLSEDEQTGSRVKSLIEKVNTPMINISDLKS
        MKPD++VSV LIDAFISK NFSMA ++LKET+E GN+P+PTDKNYVTIRDAIFKLSEDEQTG  VKSLIEK + P I +S L S
Subjt:  MKPDNHVSVVLIDAFISKQNFSMALNILKETVEIGNVPDPTDKNYVTIRDAIFKLSEDEQTGSRVKSLIEKVNTPMINISDLKS

KAG7032685.1 putative pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.0e-25

76.19

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Query:  MKPDNHVSVVLIDAFISKQNFSMALNILKETVEIGNVPDPTDKNYVTIRDAIFKLSEDEQTGSRVKSLIEKVNTPMINISDLKS
        MKPD++VSV LIDA +SKQNF MALNIL++ VE G VPDP DKNYVTIRDAIFKLSEDE+TGS V+SLIEK + P I+ISDLKS
Subjt:  MKPDNHVSVVLIDAFISKQNFSMALNILKETVEIGNVPDPTDKNYVTIRDAIFKLSEDEQTGSRVKSLIEKVNTPMINISDLKS

XP_008452421.1 PREDICTED: putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Cucumis melo]

3.4e-25

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Query:  MKPDNHVSVVLIDAFISKQNFSMALNILKETVEIGNVPDPTDKNYVTIRDAIFKLSEDEQTGSRVKSLIEKVNTPMINISDLKS
        MKPD++VSV LIDAFISK NFSMA ++LKET+E GN+P+PTDKNYVTIRDAIFKLSEDEQTG  VKSLIEK + P I +S L S
Subjt:  MKPDNHVSVVLIDAFISKQNFSMALNILKETVEIGNVPDPTDKNYVTIRDAIFKLSEDEQTGSRVKSLIEKVNTPMINISDLKS

XP_011654469.1 putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Cucumis sativus]

1.5e-25

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Query:  MKPDNHVSVVLIDAFISKQNFSMALNILKETVEIGNVPDPTDKNYVTIRDAIFKLSEDEQTGSRVKSLIEKVNTPMINISDLKS
        MKPD++VSV LIDAFISK NFSMA NILKET+E GN+PDPTDKNYVTI+DAIFKLS+DEQTG  VK+LIEK   P I++S L S
Subjt:  MKPDNHVSVVLIDAFISKQNFSMALNILKETVEIGNVPDPTDKNYVTIRDAIFKLSEDEQTGSRVKSLIEKVNTPMINISDLKS

XP_022141713.1 putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Momordica charantia]

2.0e-25

76.19

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Query:  MKPDNHVSVVLIDAFISKQNFSMALNILKETVEIGNVPDPTDKNYVTIRDAIFKLSEDEQTGSRVKSLIEKVNTPMINISDLKS
        MKPD++VSV L+DAFIS QNF MALNIL+E VE GNVPDPTDK YVTIRDAIFKLSED+QT S VKSLIEK + P I +SDL+S
Subjt:  MKPDNHVSVVLIDAFISKQNFSMALNILKETVEIGNVPDPTDKNYVTIRDAIFKLSEDEQTGSRVKSLIEKVNTPMINISDLKS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KMI5 Uncharacterized protein

7.3e-26

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Query:  MKPDNHVSVVLIDAFISKQNFSMALNILKETVEIGNVPDPTDKNYVTIRDAIFKLSEDEQTGSRVKSLIEKVNTPMINISDLKS
        MKPD++VSV LIDAFISK NFSMA NILKET+E GN+PDPTDKNYVTI+DAIFKLS+DEQTG  VK+LIEK   P I++S L S
Subjt:  MKPDNHVSVVLIDAFISKQNFSMALNILKETVEIGNVPDPTDKNYVTIRDAIFKLSEDEQTGSRVKSLIEKVNTPMINISDLKS

A0A1S3BTR3 putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial

1.6e-25

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Query:  MKPDNHVSVVLIDAFISKQNFSMALNILKETVEIGNVPDPTDKNYVTIRDAIFKLSEDEQTGSRVKSLIEKVNTPMINISDLKS
        MKPD++VSV LIDAFISK NFSMA ++LKET+E GN+P+PTDKNYVTIRDAIFKLSEDEQTG  VKSLIEK + P I +S L S
Subjt:  MKPDNHVSVVLIDAFISKQNFSMALNILKETVEIGNVPDPTDKNYVTIRDAIFKLSEDEQTGSRVKSLIEKVNTPMINISDLKS

A0A5A7UP07 Putative pentatricopeptide repeat-containing protein

1.6e-25

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Query:  MKPDNHVSVVLIDAFISKQNFSMALNILKETVEIGNVPDPTDKNYVTIRDAIFKLSEDEQTGSRVKSLIEKVNTPMINISDLKS
        MKPD++VSV LIDAFISK NFSMA ++LKET+E GN+P+PTDKNYVTIRDAIFKLSEDEQTG  VKSLIEK + P I +S L S
Subjt:  MKPDNHVSVVLIDAFISKQNFSMALNILKETVEIGNVPDPTDKNYVTIRDAIFKLSEDEQTGSRVKSLIEKVNTPMINISDLKS

A0A6J1CLB5 putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial

9.6e-26

76.19

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Query:  MKPDNHVSVVLIDAFISKQNFSMALNILKETVEIGNVPDPTDKNYVTIRDAIFKLSEDEQTGSRVKSLIEKVNTPMINISDLKS
        MKPD++VSV L+DAFIS QNF MALNIL+E VE GNVPDPTDK YVTIRDAIFKLSED+QT S VKSLIEK + P I +SDL+S
Subjt:  MKPDNHVSVVLIDAFISKQNFSMALNILKETVEIGNVPDPTDKNYVTIRDAIFKLSEDEQTGSRVKSLIEKVNTPMINISDLKS

A0A6J1HIJ6 putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial isoform X1

3.6e-25

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Query:  MKPDNHVSVVLIDAFISKQNFSMALNILKETVEIGNVPDPTDKNYVTIRDAIFKLSEDEQTGSRVKSLIEKVNTPMINISDLKS
        MKPD++VSV LI+A +SKQNF MALNIL++ VE G VPDP DKNYVTIRDAIFKLSEDE+TGS V+SLIEK + P I+ISDLKS
Subjt:  MKPDNHVSVVLIDAFISKQNFSMALNILKETVEIGNVPDPTDKNYVTIRDAIFKLSEDEQTGSRVKSLIEKVNTPMINISDLKS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAACCAGACAATCATGTCTCTGTTGTATTGATCGATGCTTTCATATCTAAACAAAACTTTTCCATGGCTCTGAACATATTAAAGGAGACAGTTGAAATCGGAAACGT
TCCCGATCCGACTGACAAGAACTATGTAACCATAAGAGATGCAATATTTAAATTATCTGAAGATGAACAAACTGGCTCAAGAGTTAAATCTCTTATCGAAAAGGTCAACA
CTCCGATGATTAACATTTCAGATCTCAAGAGTCCATCAGGTCCCATCGGTAGCTCTATAAGGGCGTTGAGAGAAAAATCCTTAGAGATTTGGGGTTCCCACAAGCCACTC
AACACACATACCTTAGAGGATACCGGTGCAACTTTGGTGGTGGTGTTCGTGATCATTTTCCAGCAAAGAAAAGGAGTTTTTGCTGCTGTATTTGGGTGGAGAACCAAGAG
TTTTTGGCGAAAACGTTCAAGAATTTCTACAAGGTACCTTATCCTAGTAACACTATGTGATACGGCCCGCTTTGTATTCGATACAGACGTATTGATCCAAGGCGTCAATG
TAGGAGACATGCGAGCAGGGGTATCCTATGCAATGACTGGTGTTACGGACACTCGTGAAGGACTAACTAGTCGATATTGGTCTATATCCGTGGACACAGAAAATATGTCT
GCAGTGAGAAGAGTGCAACTGTCCATTAGGTCCCACTGA

mRNA sequence

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Protein sequence

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MKPDNHVSVVLIDAFISKQNFSMALNILKETVEIGNVPDPTDKNYVTIRDAIFKLSEDEQTGSRVKSLIEKVNTPMINISDLKSPSGPIGSSIRALREKSLEIWGSHKPL
NTHTLEDTGATLVVVFVIIFQQRKGVFAAVFGWRTKSFWRKRSRISTRYLILVTLCDTARFVFDTDVLIQGVNVGDMRAGVSYAMTGVTDTREGLTSRYWSISVDTENMS
AVRRVQLSIRSH

Spg013907 (gene) of Sponge gourd (cylindrica) v1 genome