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Spg013908 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg013908
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold3:31420799..31426285
RNA-Seq ExpressionSpg013908
SyntenySpg013908
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34114.1 retrotransposon protein [Cucumis melo subsp. melo]2.3e-2459.18Show/hide
Query:  DRPYFETSDEWSRWRDELAEQIMTSSSRAPRHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK
        D  Y ETS+EWS+WRD LAE+IMTSSSR P+HTWT  E+A LVE LV L++ G WRSDNGTFR GY  QL  +M  K+PG ++ A S I+SR++ +K+
Subjt:  DRPYFETSDEWSRWRDELAEQIMTSSSRAPRHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK

KAA0036474.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-1951.46Show/hide
Query:  DRPYFETSDEWSRWRDELAEQI-----MTSSSRAPRHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRT
        D  Y ET++EWS+WRD+LA  +     M++S+RAPRH WT  E+  LVE L+ L+ +G W+SDNGTFRSGY AQL  +M EKL  + V A + I+ R++T
Subjt:  DRPYFETSDEWSRWRDELAEQI-----MTSSSRAPRHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRT

Query:  LKK
        LK+
Subjt:  LKK

KAA0036924.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-2152.43Show/hide
Query:  DRPYFETSDEWSRWRDELAEQI-----MTSSSRAPRHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRT
        D  Y ET++EWS+WRD LA  +     M++S+RAPRH WT  E+  LVE L+ L+ +G W+SDNGTFR GY AQL  +M EKLPG  V A + I+ R++T
Subjt:  DRPYFETSDEWSRWRDELAEQI-----MTSSSRAPRHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRT

Query:  LKK
        LK+
Subjt:  LKK

KAA0043564.1 retrotransposon protein [Cucumis melo var. makuwa]9.5e-1850Show/hide
Query:  YFETSDEWSRWRDELAEQI---------MTSSSRAPRHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVR
        Y E S+EWS  RD+LA  +         MTSSSRA +HTWT  E+AKLVE LV L+  G WRS+NGTFR GY AQL+ +M +KL   ++     ++ RV+
Subjt:  YFETSDEWSRWRDELAEQI---------MTSSSRAPRHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVR

Query:  TLKK
        +LKK
Subjt:  TLKK

KAA0060558.1 retrotransposon protein [Cucumis melo var. makuwa]4.2e-1850Show/hide
Query:  DRPYFETSDEWSRWRDELAEQIMTSSSRAPRHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK
        D  Y E S+EW+ WRD+LAE+I+ SSSR P+H WT  E+A LVE L+ L++ G WR DN TFR  Y  QL  +M  K+PG ++ A + I+SR++ LK+
Subjt:  DRPYFETSDEWSRWRDELAEQIMTSSSRAPRHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK

TrEMBL top hitse value%identityAlignment
A0A5A7SYW1 Retrotransposon protein8.3e-2051.46Show/hide
Query:  DRPYFETSDEWSRWRDELAEQI-----MTSSSRAPRHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRT
        D  Y ET++EWS+WRD+LA  +     M++S+RAPRH WT  E+  LVE L+ L+ +G W+SDNGTFRSGY AQL  +M EKL  + V A + I+ R++T
Subjt:  DRPYFETSDEWSRWRDELAEQI-----MTSSSRAPRHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRT

Query:  LKK
        LK+
Subjt:  LKK

A0A5A7T091 Retrotransposon protein5.2e-2252.43Show/hide
Query:  DRPYFETSDEWSRWRDELAEQI-----MTSSSRAPRHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRT
        D  Y ET++EWS+WRD LA  +     M++S+RAPRH WT  E+  LVE L+ L+ +G W+SDNGTFR GY AQL  +M EKLPG  V A + I+ R++T
Subjt:  DRPYFETSDEWSRWRDELAEQI-----MTSSSRAPRHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRT

Query:  LKK
        LK+
Subjt:  LKK

A0A5A7TJS2 Retrotransposon protein4.6e-1850Show/hide
Query:  YFETSDEWSRWRDELAEQI---------MTSSSRAPRHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVR
        Y E S+EWS  RD+LA  +         MTSSSRA +HTWT  E+AKLVE LV L+  G WRS+NGTFR GY AQL+ +M +KL   ++     ++ RV+
Subjt:  YFETSDEWSRWRDELAEQI---------MTSSSRAPRHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVR

Query:  TLKK
        +LKK
Subjt:  TLKK

A0A5D3BRF0 Retrotransposon protein2.1e-1850Show/hide
Query:  DRPYFETSDEWSRWRDELAEQIMTSSSRAPRHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK
        D  Y E S+EW+ WRD+LAE+I+ SSSR P+H WT  E+A LVE L+ L++ G WR DN TFR  Y  QL  +M  K+PG ++ A + I+SR++ LK+
Subjt:  DRPYFETSDEWSRWRDELAEQIMTSSSRAPRHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK

E5GCB5 Retrotransposon protein1.1e-2459.18Show/hide
Query:  DRPYFETSDEWSRWRDELAEQIMTSSSRAPRHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK
        D  Y ETS+EWS+WRD LAE+IMTSSSR P+HTWT  E+A LVE LV L++ G WRSDNGTFR GY  QL  +M  K+PG ++ A S I+SR++ +K+
Subjt:  DRPYFETSDEWSRWRDELAEQIMTSSSRAPRHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGGAGGCAAGAGAGAATGCAAGAGGTTTCTGCAGCCCCTTCGTCTTCTCCGTCACCCTCTTCTTCCTCAAGCGTATCTCTTTGTCTCCCTTCTCTATCCGTTTC
CAGATCGGTGTTTTTCACCAGATCTGAAATGAGTTTTCACGATTCCCTCGCCGCTCTGAATAGGGTTCCCCCTCTTGCCGCTTTCCTTCGACTCTTCGATGTTGCATGTT
GGATTCGATGGGTTAGGACTTCGGGGAATGCGTGGATTTGGAAAACATACTTTGATCGACCTTACTTCGAGACTTCAGACGAATGGAGCCGGTGGAGGGATGAGTTGGCA
GAACAGATAATGACCAGTTCCTCTAGAGCTCCAAGACACACGTGGACGAATAACGAGGACGCGAAGCTTGTGGAGTCCCTCGTGTCGTTACTTCATGTGGGCGATTGGAG
GTCCGATAATGGGACGTTCAGATCTGGGTATCAAGCGCAACTGGAACACTTGATGAGGGAGAAACTGCCGGGACGGGACGTTCCAGCACAGAGCTGCATTGAATCCAGGG
TTCGCACCCTGAAGAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAGGGAGGCAAGAGAGAATGCAAGAGGTTTCTGCAGCCCCTTCGTCTTCTCCGTCACCCTCTTCTTCCTCAAGCGTATCTCTTTGTCTCCCTTCTCTATCCGTTTC
CAGATCGGTGTTTTTCACCAGATCTGAAATGAGTTTTCACGATTCCCTCGCCGCTCTGAATAGGGTTCCCCCTCTTGCCGCTTTCCTTCGACTCTTCGATGTTGCATGTT
GGATTCGATGGGTTAGGACTTCGGGGAATGCGTGGATTTGGAAAACATACTTTGATCGACCTTACTTCGAGACTTCAGACGAATGGAGCCGGTGGAGGGATGAGTTGGCA
GAACAGATAATGACCAGTTCCTCTAGAGCTCCAAGACACACGTGGACGAATAACGAGGACGCGAAGCTTGTGGAGTCCCTCGTGTCGTTACTTCATGTGGGCGATTGGAG
GTCCGATAATGGGACGTTCAGATCTGGGTATCAAGCGCAACTGGAACACTTGATGAGGGAGAAACTGCCGGGACGGGACGTTCCAGCACAGAGCTGCATTGAATCCAGGG
TTCGCACCCTGAAGAAATAA
Protein sequenceShow/hide protein sequence
MRGRQERMQEVSAAPSSSPSPSSSSSVSLCLPSLSVSRSVFFTRSEMSFHDSLAALNRVPPLAAFLRLFDVACWIRWVRTSGNAWIWKTYFDRPYFETSDEWSRWRDELA
EQIMTSSSRAPRHTWTNNEDAKLVESLVSLLHVGDWRSDNGTFRSGYQAQLEHLMREKLPGRDVPAQSCIESRVRTLKK