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Spg013961 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg013961
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold3:35741774..35745413
RNA-Seq ExpressionSpg013961
SyntenySpg013961
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]3.1e-0654.84Show/hide
Query:  EEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSTEGTTPKYRP
        +++ +E EKTRKDIEELREK+DAIL+ALE+GK    IA++SN +++PP  Q   G  P +RP
Subjt:  EEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSTEGTTPKYRP

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]4.1e-1438.46Show/hide
Query:  VEQHPFPFFKNEQVPVHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV
        V  +P P   N Q+           ++   + TPM ELFEIL  +GY+ VE L  +L  + YD+SL C +H GAKGH+++QC  FR+ VQELLDS  LTV
Subjt:  VEQHPFPFFKNEQVPVHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV

Query:  SQ-------KMVQLPQYGEVDIIEECSRQEKEKRLARLENREP
        +         +V+     E  I E  S   K KRL    + +P
Subjt:  SQ-------KMVQLPQYGEVDIIEECSRQEKEKRLARLENREP

XP_022155744.1 uncharacterized protein LOC111022791 [Momordica charantia]2.6e-1351.19Show/hide
Query:  EKEKRLARLENREPKYQMNIIPHLHDTFIFAGIIHPESQDPAVM-AIIEQKKEVGLLVYLCPEDFELNNWTVMELPSFVNEISK
        EK KRL+R EN E  Y   I+P L  +F  AG IH E  + +V+ A+ E++++VG  VYLCP+ FEL+NW+V+ELPSFVN   K
Subjt:  EKEKRLARLENREPKYQMNIIPHLHDTFIFAGIIHPESQDPAVM-AIIEQKKEVGLLVYLCPEDFELNNWTVMELPSFVNEISK

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]8.2e-1539.86Show/hide
Query:  VEQHPFPFFKNEQVPVHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV
        V ++P    +N Q+      G    ++   + TP  ELFEIL  +GY+ VE L  +L  + YD+SL C +H GAKGHS++QC  FR+KVQELLDS  LTV
Subjt:  VEQHPFPFFKNEQVPVHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV

Query:  --SQKMVQLPQYGEVDIIEECSRQEKEKRLARLENREP
          S +   +    +V + E  S   K KRL    + +P
Subjt:  --SQKMVQLPQYGEVDIIEECSRQEKEKRLARLENREP

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]1.4e-0944.55Show/hide
Query:  MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMND------------PPIRQSTEGTTPK---YRPLYNIPVEQHPFPFFKN-EQVPV
        ME+Q  E EKTRKDIEELREK+D I + LE+GK   D A SSN +++            PP+R   EG  P+   Y PLY++P+ Q+P  F K  +Q+P 
Subjt:  MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMND------------PPIRQSTEGTTPK---YRPLYNIPVEQHPFPFFKN-EQVPV

Query:  H
        +
Subjt:  H

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]1.8e-1437.41Show/hide
Query:  VEQHPFPFFKNEQVPVHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV
        V+ +P P  KN Q+      G    ++   + TPM  LFEIL+ +GY+ +E L  D+    YD++L C YH GA+GH ++QC  F+ KVQELLD   LTV
Subjt:  VEQHPFPFFKNEQVPVHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV

Query:  SQKMVQLPQYGEVDIIEECSRQE------KEKRLARLENREPKYQMN
        +Q      Q   +D++E  S  E      K K L  L   +P+   N
Subjt:  SQKMVQLPQYGEVDIIEECSRQE------KEKRLARLENREPKYQMN

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]6.3e-1542.28Show/hide
Query:  VEQHPFPFFKNEQVPVHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV
        V ++P P  +N Q+           ++   + TPM ELFEIL  +GY+ VE L  +L  + YD+SL C +H GAKGHS++QC  FR+KVQELLDS  LTV
Subjt:  VEQHPFPFFKNEQVPVHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV

Query:  SQKMVQLPQYGEVDIIEECSRQE
        +       Q   ++I+E+ S  E
Subjt:  SQKMVQLPQYGEVDIIEECSRQE

TrEMBL top hitse value%identityAlignment
A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222311.5e-0654.84Show/hide
Query:  EEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSTEGTTPKYRP
        +++ +E EKTRKDIEELREK+DAIL+ALE+GK    IA++SN +++PP  Q   G  P +RP
Subjt:  EEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSTEGTTPKYRP

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222312.0e-1438.46Show/hide
Query:  VEQHPFPFFKNEQVPVHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV
        V  +P P   N Q+           ++   + TPM ELFEIL  +GY+ VE L  +L  + YD+SL C +H GAKGH+++QC  FR+ VQELLDS  LTV
Subjt:  VEQHPFPFFKNEQVPVHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV

Query:  SQ-------KMVQLPQYGEVDIIEECSRQEKEKRLARLENREP
        +         +V+     E  I E  S   K KRL    + +P
Subjt:  SQ-------KMVQLPQYGEVDIIEECSRQEKEKRLARLENREP

A0A6J1DR66 uncharacterized protein LOC1110227911.3e-1351.19Show/hide
Query:  EKEKRLARLENREPKYQMNIIPHLHDTFIFAGIIHPESQDPAVM-AIIEQKKEVGLLVYLCPEDFELNNWTVMELPSFVNEISK
        EK KRL+R EN E  Y   I+P L  +F  AG IH E  + +V+ A+ E++++VG  VYLCP+ FEL+NW+V+ELPSFVN   K
Subjt:  EKEKRLARLENREPKYQMNIIPHLHDTFIFAGIIHPESQDPAVM-AIIEQKKEVGLLVYLCPEDFELNNWTVMELPSFVNEISK

A0A6J1DZ90 Ribonuclease H4.0e-1539.86Show/hide
Query:  VEQHPFPFFKNEQVPVHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV
        V ++P    +N Q+      G    ++   + TP  ELFEIL  +GY+ VE L  +L  + YD+SL C +H GAKGHS++QC  FR+KVQELLDS  LTV
Subjt:  VEQHPFPFFKNEQVPVHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV

Query:  --SQKMVQLPQYGEVDIIEECSRQEKEKRLARLENREP
          S +   +    +V + E  S   K KRL    + +P
Subjt:  --SQKMVQLPQYGEVDIIEECSRQEKEKRLARLENREP

A0A6J1DZ90 Ribonuclease H6.5e-1044.55Show/hide
Query:  MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMND------------PPIRQSTEGTTPK---YRPLYNIPVEQHPFPFFKN-EQVPV
        ME+Q  E EKTRKDIEELREK+D I + LE+GK   D A SSN +++            PP+R   EG  P+   Y PLY++P+ Q+P  F K  +Q+P 
Subjt:  MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMND------------PPIRQSTEGTTPK---YRPLYNIPVEQHPFPFFKN-EQVPV

Query:  H
        +
Subjt:  H

A0A6J1DZ90 Ribonuclease H8.8e-1537.41Show/hide
Query:  VEQHPFPFFKNEQVPVHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV
        V+ +P P  KN Q+      G    ++   + TPM  LFEIL+ +GY+ +E L  D+    YD++L C YH GA+GH ++QC  F+ KVQELLD   LTV
Subjt:  VEQHPFPFFKNEQVPVHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV

Query:  SQKMVQLPQYGEVDIIEECSRQE------KEKRLARLENREPKYQMN
        +Q      Q   +D++E  S  E      K K L  L   +P+   N
Subjt:  SQKMVQLPQYGEVDIIEECSRQE------KEKRLARLENREPKYQMN

A0A6J1E2J7 Ribonuclease H3.0e-1542.28Show/hide
Query:  VEQHPFPFFKNEQVPVHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV
        V ++P P  +N Q+           ++   + TPM ELFEIL  +GY+ VE L  +L  + YD+SL C +H GAKGHS++QC  FR+KVQELLDS  LTV
Subjt:  VEQHPFPFFKNEQVPVHNQPGFSLPTE--SVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTV

Query:  SQKMVQLPQYGEVDIIEECSRQE
        +       Q   ++I+E+ S  E
Subjt:  SQKMVQLPQYGEVDIIEECSRQE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATCGATTAAGAAGGGATAATGAAGTCTCCCAAGCAACTCTCAAGTCAAGGAATGACCAAGTTTTGAAGCAACAATATGAGATTACCTCACTCCATGAGTTGATGAA
AGAGCTCGAAGATTGCATTAGTTTGAGGAACCAAACGATTACTGAGGTAGAAGAAAAGAATGGAACGCTATGTCGAACAATTAACGACCTGCAATTAACGCTCAAGATTA
GAGAAGATCAACTGGGGGAGCTCATCAACGACAACAAGGGTCTAAGAGAGTCCGTTCAGTCACTCAATGTTCGCCTCGGTAAGTATCAGGATGCCACTGACAAATTAATG
AAAGACTATACCTATCTAAAGGAGCAGTATGACAGATTGAGCGATGATTTTGGGTTTGTGAGACAAAACCACGCGACACTACGAAGTAAAGTTGAACATATGCTCACTCA
GATTAGGAGAGTCACTCGAAGGGCAGATGAACTAGCAGAAGATGCACGTACTCTCTCTAAAAGTCATAAGATAGCTCGGTCACCTCGAATCCACCGCACCAACGTCACAA
GATACAGGACAAGGATCATGGAAGAGCAAAGTACTGAGATGGAGAAAACAAGGAAAGATATTGAGGAGTTACGAGAAAAAATGGATGCCATTCTTGTCGCCTTGGAAAGA
GGCAAAATAATACCTGATATTGCTCAGTCCAGCAATACAATGAATGACCCTCCAATCCGGCAATCAACAGAGGGTACTACTCCAAAATATCGTCCATTGTACAATATTCC
AGTAGAGCAGCACCCATTTCCATTTTTCAAGAATGAGCAAGTGCCTGTACACAATCAACCTGGATTTTCACTACCTACAGAGAGCGTAGTGACTCCCATGGGAGAATTAT
TCGAAATATTATTCAGTAATGGATACATTGGTGTAGAACGCCTCCAATTAGATTTGGGTGTCAGAGCATACGATGACAGTTTGATGTGTTCTTATCACACTGGGGCAAAA
GGGCATTCTATCGACCAATGTCCTCATTTTCGTCTGAAGGTTCAGGAGTTGTTAGATTCACATTTTTTAACAGTTTCTCAAAAGATGGTTCAGCTCCCTCAGTATGGGGA
AGTTGATATTATAGAAGAATGCTCAAGGCAGGAGAAAGAAAAACGACTGGCTAGATTGGAGAACCGTGAGCCGAAGTATCAAATGAATATCATTCCTCATCTTCATGATA
CCTTCATCTTTGCTGGAATAATTCATCCAGAATCTCAAGACCCTGCAGTCATGGCTATAATCGAACAGAAGAAAGAAGTTGGTCTCTTGGTTTATCTGTGCCCAGAAGAC
TTTGAACTCAATAATTGGACTGTAATGGAGCTACCATCATTTGTTAATGAGATATCAAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCATCGATTAAGAAGGGATAATGAAGTCTCCCAAGCAACTCTCAAGTCAAGGAATGACCAAGTTTTGAAGCAACAATATGAGATTACCTCACTCCATGAGTTGATGAA
AGAGCTCGAAGATTGCATTAGTTTGAGGAACCAAACGATTACTGAGGTAGAAGAAAAGAATGGAACGCTATGTCGAACAATTAACGACCTGCAATTAACGCTCAAGATTA
GAGAAGATCAACTGGGGGAGCTCATCAACGACAACAAGGGTCTAAGAGAGTCCGTTCAGTCACTCAATGTTCGCCTCGGTAAGTATCAGGATGCCACTGACAAATTAATG
AAAGACTATACCTATCTAAAGGAGCAGTATGACAGATTGAGCGATGATTTTGGGTTTGTGAGACAAAACCACGCGACACTACGAAGTAAAGTTGAACATATGCTCACTCA
GATTAGGAGAGTCACTCGAAGGGCAGATGAACTAGCAGAAGATGCACGTACTCTCTCTAAAAGTCATAAGATAGCTCGGTCACCTCGAATCCACCGCACCAACGTCACAA
GATACAGGACAAGGATCATGGAAGAGCAAAGTACTGAGATGGAGAAAACAAGGAAAGATATTGAGGAGTTACGAGAAAAAATGGATGCCATTCTTGTCGCCTTGGAAAGA
GGCAAAATAATACCTGATATTGCTCAGTCCAGCAATACAATGAATGACCCTCCAATCCGGCAATCAACAGAGGGTACTACTCCAAAATATCGTCCATTGTACAATATTCC
AGTAGAGCAGCACCCATTTCCATTTTTCAAGAATGAGCAAGTGCCTGTACACAATCAACCTGGATTTTCACTACCTACAGAGAGCGTAGTGACTCCCATGGGAGAATTAT
TCGAAATATTATTCAGTAATGGATACATTGGTGTAGAACGCCTCCAATTAGATTTGGGTGTCAGAGCATACGATGACAGTTTGATGTGTTCTTATCACACTGGGGCAAAA
GGGCATTCTATCGACCAATGTCCTCATTTTCGTCTGAAGGTTCAGGAGTTGTTAGATTCACATTTTTTAACAGTTTCTCAAAAGATGGTTCAGCTCCCTCAGTATGGGGA
AGTTGATATTATAGAAGAATGCTCAAGGCAGGAGAAAGAAAAACGACTGGCTAGATTGGAGAACCGTGAGCCGAAGTATCAAATGAATATCATTCCTCATCTTCATGATA
CCTTCATCTTTGCTGGAATAATTCATCCAGAATCTCAAGACCCTGCAGTCATGGCTATAATCGAACAGAAGAAAGAAGTTGGTCTCTTGGTTTATCTGTGCCCAGAAGAC
TTTGAACTCAATAATTGGACTGTAATGGAGCTACCATCATTTGTTAATGAGATATCAAAGTAA
Protein sequenceShow/hide protein sequence
MHRLRRDNEVSQATLKSRNDQVLKQQYEITSLHELMKELEDCISLRNQTITEVEEKNGTLCRTINDLQLTLKIREDQLGELINDNKGLRESVQSLNVRLGKYQDATDKLM
KDYTYLKEQYDRLSDDFGFVRQNHATLRSKVEHMLTQIRRVTRRADELAEDARTLSKSHKIARSPRIHRTNVTRYRTRIMEEQSTEMEKTRKDIEELREKMDAILVALER
GKIIPDIAQSSNTMNDPPIRQSTEGTTPKYRPLYNIPVEQHPFPFFKNEQVPVHNQPGFSLPTESVVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAK
GHSIDQCPHFRLKVQELLDSHFLTVSQKMVQLPQYGEVDIIEECSRQEKEKRLARLENREPKYQMNIIPHLHDTFIFAGIIHPESQDPAVMAIIEQKKEVGLLVYLCPED
FELNNWTVMELPSFVNEISK