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Spg013963 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg013963
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionclassical arabinogalactan protein 26
Genome locationscaffold3:43974748..43975152
RNA-Seq ExpressionSpg013963
SyntenySpg013963
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR039346 - Classical arabinogalactan protein 25/26


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575865.1 hypothetical protein SDJN03_26504, partial [Cucurbita argyrosperma subsp. sororia]9.6e-4983.09Show/hide
Query:  MASVFSLYIPIFMAYTASIFPFSFASYPNYFPPLLSSISAAPEFSPSPSPSP--DIFPLFPTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPP
        MAS+FSLYIPIFMAYTASI PFSFASYPN+FPPL+SSISAAPEFSPSPSPSP  DI PLFPTPGGA L PSSLPTIPSSPSPPNPD   AAPAPE+PLPP
Subjt:  MASVFSLYIPIFMAYTASIFPFSFASYPNYFPPLLSSISAAPEFSPSPSPSP--DIFPLFPTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPP

Query:  SQSLPFSAAAPLNSGRWCWPVLVALTAVSFAAELCR
        SQSLPFSAAA LNSG WCW + VALTA +  AE+CR
Subjt:  SQSLPFSAAAPLNSGRWCWPVLVALTAVSFAAELCR

XP_022953817.1 classical arabinogalactan protein 26 [Cucurbita moschata]9.6e-4983.09Show/hide
Query:  MASVFSLYIPIFMAYTASIFPFSFASYPNYFPPLLSSISAAPEFSPSPSPSP--DIFPLFPTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPP
        MAS+FSLYIPIFMAYTASI PFSFASYPN+FPPL+SSISAAPEFSPSPSPSP  DI PLFPTPGGA L PSSLPTIPSSPSPPNPD   AAPAPE+PLPP
Subjt:  MASVFSLYIPIFMAYTASIFPFSFASYPNYFPPLLSSISAAPEFSPSPSPSP--DIFPLFPTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPP

Query:  SQSLPFSAAAPLNSGRWCWPVLVALTAVSFAAELCR
        SQSLPFSAAA LNSG WCW + VALTA +  AE+CR
Subjt:  SQSLPFSAAAPLNSGRWCWPVLVALTAVSFAAELCR

XP_022991733.1 classical arabinogalactan protein 26 [Cucurbita maxima]1.8e-4781.62Show/hide
Query:  MASVFSLYIPIFMAYTASIFPFSFASYPNYFPPLLSSISAAPEFSPSPSPSP--DIFPLFPTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPP
        MAS+FSLYIPIFMAYTASIF FSFASYPN+FPPL+SSISAAPEFSPSPSPSP  DI PLFPTPGGA L PSSLPTIPSSPSPPNPD   A PAPE+PLPP
Subjt:  MASVFSLYIPIFMAYTASIFPFSFASYPNYFPPLLSSISAAPEFSPSPSPSP--DIFPLFPTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPP

Query:  SQSLPFSAAAPLNSGRWCWPVLVALTAVSFAAELCR
        SQSLPFSAAA LNSG WCW + VALTA +   E+CR
Subjt:  SQSLPFSAAAPLNSGRWCWPVLVALTAVSFAAELCR

XP_023548939.1 classical arabinogalactan protein 26-like [Cucurbita pepo subsp. pepo]5.6e-4983.09Show/hide
Query:  MASVFSLYIPIFMAYTASIFPFSFASYPNYFPPLLSSISAAPEFSPSPSPSP--DIFPLFPTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPP
        MAS+FSLYIPIFMAYTASIFPFSFASYPN+FPPL+SSISAAPEFSPSPSPSP  DI PLFPTPGGA L PSSLPTIPSSPSPPNPD   AAPAPE+PLPP
Subjt:  MASVFSLYIPIFMAYTASIFPFSFASYPNYFPPLLSSISAAPEFSPSPSPSP--DIFPLFPTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPP

Query:  SQSLPFSAAAPLNSGRWCWPVLVALTAVSFAAELCR
        SQSLPFSA A LNSG WCW + VALTA +  AE+CR
Subjt:  SQSLPFSAAAPLNSGRWCWPVLVALTAVSFAAELCR

XP_038876736.1 classical arabinogalactan protein 26-like [Benincasa hispida]1.4e-4478.99Show/hide
Query:  MASVFSLYIPIFMAYTASIFPFSFASYPNYFPPLLSSISAAPEFSPSPSPSP----DIFPLFPTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPL
        MAS+FSLYIPIFMAYTASI PFS ASYPNY P L+SSISAAPEFSP PSPSP    DI PLFPTPGGA L PSSLPTIPSSPSPPNPD   AAPAPE+ L
Subjt:  MASVFSLYIPIFMAYTASIFPFSFASYPNYFPPLLSSISAAPEFSPSPSPSP----DIFPLFPTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPL

Query:  PPSQSLPFSAAAPLNSGRWCWPVLVALTAVSFAAELCR
        PPSQSLPFSAA  LN   WCWPVLVALT  + A ELCR
Subjt:  PPSQSLPFSAAAPLNSGRWCWPVLVALTAVSFAAELCR

TrEMBL top hitse value%identityAlignment
A0A0A0K510 Uncharacterized protein9.4e-4277.78Show/hide
Query:  MASVFSLYIPIFMAYTASIFPFSFASYPNYFPP-LLSSISAAPEFSPSPSPSPDIFPLFPTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPPS
        MAS+FSLYIPIFMAYTAS+FPFSFASYPN FP  L+SSISAAPEFSPSP+P+ DI PLFPTPG A L PSSLPTIPSSPSPPNPD   AAPAPE+PL PS
Subjt:  MASVFSLYIPIFMAYTASIFPFSFASYPNYFPP-LLSSISAAPEFSPSPSPSPDIFPLFPTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPPS

Query:  QSLPFSAAAPLNSGRWCWPVLVALTAVSFAAELCR
        QSLPFS AA LNSG WC  V VALT  +  AEL R
Subjt:  QSLPFSAAAPLNSGRWCWPVLVALTAVSFAAELCR

A0A1S3BRG9 classical arabinogalactan protein 263.7e-3871.74Show/hide
Query:  MASVFSLYIPIFMAYTASIFPFSFASYPNYFPP----LLSSISAAPEFSPSPSPSPDIFPLFPTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPL
        MAS+FSLYIPIFMAYTAS FPF+FASYPNYFP     + SSISAAPEFSP+P+PS DI PLFPTPG A L PSSLPTIPSSPSPPNPD    APAPE+PL
Subjt:  MASVFSLYIPIFMAYTASIFPFSFASYPNYFPP----LLSSISAAPEFSPSPSPSPDIFPLFPTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPL

Query:  PPSQSLPFSAAAPLNSGRWCWPVLVALTAVSFAAELCR
         P+ S+PFSAAA LNS  WC  V +AL   + AAEL R
Subjt:  PPSQSLPFSAAAPLNSGRWCWPVLVALTAVSFAAELCR

A0A5A7UQZ3 Classical arabinogalactan protein 263.7e-3871.74Show/hide
Query:  MASVFSLYIPIFMAYTASIFPFSFASYPNYFPP----LLSSISAAPEFSPSPSPSPDIFPLFPTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPL
        MAS+FSLYIPIFMAYTAS FPF+FASYPNYFP     + SSISAAPEFSP+P+PS DI PLFPTPG A L PSSLPTIPSSPSPPNPD    APAPE+PL
Subjt:  MASVFSLYIPIFMAYTASIFPFSFASYPNYFPP----LLSSISAAPEFSPSPSPSPDIFPLFPTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPL

Query:  PPSQSLPFSAAAPLNSGRWCWPVLVALTAVSFAAELCR
         P+ S+PFSAAA LNS  WC  V +AL   + AAEL R
Subjt:  PPSQSLPFSAAAPLNSGRWCWPVLVALTAVSFAAELCR

A0A6J1GPB2 classical arabinogalactan protein 264.6e-4983.09Show/hide
Query:  MASVFSLYIPIFMAYTASIFPFSFASYPNYFPPLLSSISAAPEFSPSPSPSP--DIFPLFPTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPP
        MAS+FSLYIPIFMAYTASI PFSFASYPN+FPPL+SSISAAPEFSPSPSPSP  DI PLFPTPGGA L PSSLPTIPSSPSPPNPD   AAPAPE+PLPP
Subjt:  MASVFSLYIPIFMAYTASIFPFSFASYPNYFPPLLSSISAAPEFSPSPSPSP--DIFPLFPTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPP

Query:  SQSLPFSAAAPLNSGRWCWPVLVALTAVSFAAELCR
        SQSLPFSAAA LNSG WCW + VALTA +  AE+CR
Subjt:  SQSLPFSAAAPLNSGRWCWPVLVALTAVSFAAELCR

A0A6J1JX46 classical arabinogalactan protein 268.8e-4881.62Show/hide
Query:  MASVFSLYIPIFMAYTASIFPFSFASYPNYFPPLLSSISAAPEFSPSPSPSP--DIFPLFPTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPP
        MAS+FSLYIPIFMAYTASIF FSFASYPN+FPPL+SSISAAPEFSPSPSPSP  DI PLFPTPGGA L PSSLPTIPSSPSPPNPD   A PAPE+PLPP
Subjt:  MASVFSLYIPIFMAYTASIFPFSFASYPNYFPPLLSSISAAPEFSPSPSPSP--DIFPLFPTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPP

Query:  SQSLPFSAAAPLNSGRWCWPVLVALTAVSFAAELCR
        SQSLPFSAAA LNSG WCW + VALTA +   E+CR
Subjt:  SQSLPFSAAAPLNSGRWCWPVLVALTAVSFAAELCR

SwissProt top hitse value%identityAlignment
Q94F57 Classical arabinogalactan protein 268.0e-0643.69Show/hide
Query:  LSSISAAPEFSP---------SPSPSPDIFPLFPTPGGAALTPSS-----LPTIPSSPSPPNPDSTVAAPAPELPLPPSQSLPFSAAAPLNSGRWCWPVL
        LS+ISAAP F P         +P+ SPD  PLFPTPG + ++PS      +PTIPSS SPPNPD+    P  E+  P    LP S++  L S +    +L
Subjt:  LSSISAAPEFSP---------SPSPSPDIFPLFPTPGGAALTPSS-----LPTIPSSPSPPNPDSTVAAPAPELPLPPSQSLPFSAAAPLNSGRWCWPVL

Query:  VAL
        V L
Subjt:  VAL

Arabidopsis top hitse value%identityAlignment
AT2G47930.1 arabinogalactan protein 265.7e-0743.69Show/hide
Query:  LSSISAAPEFSP---------SPSPSPDIFPLFPTPGGAALTPSS-----LPTIPSSPSPPNPDSTVAAPAPELPLPPSQSLPFSAAAPLNSGRWCWPVL
        LS+ISAAP F P         +P+ SPD  PLFPTPG + ++PS      +PTIPSS SPPNPD+    P  E+  P    LP S++  L S +    +L
Subjt:  LSSISAAPEFSP---------SPSPSPDIFPLFPTPGGAALTPSS-----LPTIPSSPSPPNPDSTVAAPAPELPLPPSQSLPFSAAAPLNSGRWCWPVL

Query:  VAL
        V L
Subjt:  VAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCGTTTTCTCTCTCTACATCCCCATTTTCATGGCCTACACAGCTTCTATTTTCCCTTTCTCTTTCGCTTCTTATCCCAATTACTTCCCTCCCCTCCTTTCTTC
CATCTCCGCCGCGCCGGAATTTTCCCCGTCTCCCTCGCCGTCGCCGGACATTTTTCCGCTCTTTCCGACGCCCGGCGGTGCCGCCCTTACGCCGTCCTCCTTGCCGACCA
TCCCCTCCAGCCCCAGCCCTCCCAACCCGGATTCTACGGTTGCCGCGCCCGCGCCGGAGCTGCCTCTTCCGCCGTCTCAGTCCTTGCCGTTCTCTGCTGCTGCTCCTCTC
AACTCCGGTCGGTGGTGTTGGCCTGTTTTGGTGGCTCTCACGGCGGTTTCTTTCGCGGCGGAGCTCTGCCGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCGTTTTCTCTCTCTACATCCCCATTTTCATGGCCTACACAGCTTCTATTTTCCCTTTCTCTTTCGCTTCTTATCCCAATTACTTCCCTCCCCTCCTTTCTTC
CATCTCCGCCGCGCCGGAATTTTCCCCGTCTCCCTCGCCGTCGCCGGACATTTTTCCGCTCTTTCCGACGCCCGGCGGTGCCGCCCTTACGCCGTCCTCCTTGCCGACCA
TCCCCTCCAGCCCCAGCCCTCCCAACCCGGATTCTACGGTTGCCGCGCCCGCGCCGGAGCTGCCTCTTCCGCCGTCTCAGTCCTTGCCGTTCTCTGCTGCTGCTCCTCTC
AACTCCGGTCGGTGGTGTTGGCCTGTTTTGGTGGCTCTCACGGCGGTTTCTTTCGCGGCGGAGCTCTGCCGGTGA
Protein sequenceShow/hide protein sequence
MASVFSLYIPIFMAYTASIFPFSFASYPNYFPPLLSSISAAPEFSPSPSPSPDIFPLFPTPGGAALTPSSLPTIPSSPSPPNPDSTVAAPAPELPLPPSQSLPFSAAAPL
NSGRWCWPVLVALTAVSFAAELCR