; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg013978 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg013978
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionmethylcrotonoyl-CoA carboxylase beta chain, mitochondrial
Genome locationscaffold3:36264183..36264749
RNA-Seq ExpressionSpg013978
SyntenySpg013978
Gene Ontology termsGO:0006552 - leucine catabolic process (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:1905202 - methylcrotonoyl-CoA carboxylase complex (cellular component)
GO:0004485 - methylcrotonoyl-CoA carboxylase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR029045 - ClpP/crotonase-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588666.1 Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]2.8e-4888.5Show/hide
Query:  MLRTFARRAASSSSFFTSNSWVSITAQVLLPHKREFCLGVLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKLLPRERIDRL
        MLRTF+RRAASSSSFFTSNSWVSI+ Q+L P +REFCLGVLPDGVDRSSDAFARNS+AM GFI+ELRSHINKVLAGGGPEAV+RN SRNKLLPRERIDRL
Subjt:  MLRTFARRAASSSSFFTSNSWVSITAQVLLPHKREFCLGVLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKLLPRERIDRL

Query:  LDPGSSFLELSQV
        LDPGSSFLELSQ+
Subjt:  LDPGSSFLELSQV

KAG7022452.1 Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-4888.5Show/hide
Query:  MLRTFARRAASSSSFFTSNSWVSITAQVLLPHKREFCLGVLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKLLPRERIDRL
        MLRTF+RRAASSSSFFTSNSWVSI+ Q+L P +REFCLGVLPDGVDRSSDAFARNS+AM GFI+ELRSHINKVLAGGGPEAV+RN SRNKLLPRERIDRL
Subjt:  MLRTFARRAASSSSFFTSNSWVSITAQVLLPHKREFCLGVLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKLLPRERIDRL

Query:  LDPGSSFLELSQV
        LDPGSSFLELSQ+
Subjt:  LDPGSSFLELSQV

XP_022927902.1 methylcrotonoyl-CoA carboxylase beta chain, mitochondrial [Cucurbita moschata]2.8e-4888.5Show/hide
Query:  MLRTFARRAASSSSFFTSNSWVSITAQVLLPHKREFCLGVLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKLLPRERIDRL
        MLRTF+RRAASSSSFFTSNSWVSI+ Q+L P +REFCLGVLPDGVDRSSDAFARNS+AM GFI+ELRSHINKVLAGGGPEAV+RN SRNKLLPRERIDRL
Subjt:  MLRTFARRAASSSSFFTSNSWVSITAQVLLPHKREFCLGVLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKLLPRERIDRL

Query:  LDPGSSFLELSQV
        LDPGSSFLELSQ+
Subjt:  LDPGSSFLELSQV

XP_023529371.1 methylcrotonoyl-CoA carboxylase beta chain, mitochondrial [Cucurbita pepo subsp. pepo]8.1e-4887.61Show/hide
Query:  MLRTFARRAASSSSFFTSNSWVSITAQVLLPHKREFCLGVLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKLLPRERIDRL
        MLRTF+RRAASSSSFFTSNSWVSI+ Q+L P +REFCLGVLPDGVDRSSDAFARNS+AM GFI+ELRSHINKVLAGGGP+AV+RN SRNKLLPRERIDRL
Subjt:  MLRTFARRAASSSSFFTSNSWVSITAQVLLPHKREFCLGVLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKLLPRERIDRL

Query:  LDPGSSFLELSQV
        LDPGSSFLELSQ+
Subjt:  LDPGSSFLELSQV

XP_038887940.1 methylcrotonoyl-CoA carboxylase beta chain, mitochondrial [Benincasa hispida]1.2e-4685.84Show/hide
Query:  MLRTFARRAASSSSFFTSNSWVSITAQVLLPHKREFCLGVLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKLLPRERIDRL
        MLRTFAR+AASSSSF +SN  +SI+ Q+LLP KREFCLGVLPDG+DRSSDAFARNS+AMDGFISELRSHINKVLAGGGPEA++RN+SRNKLLPRERIDRL
Subjt:  MLRTFARRAASSSSFFTSNSWVSITAQVLLPHKREFCLGVLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKLLPRERIDRL

Query:  LDPGSSFLELSQV
        LDPGSSFLELSQ+
Subjt:  LDPGSSFLELSQV

TrEMBL top hitse value%identityAlignment
A0A0A0K4Q8 Uncharacterized protein1.5e-4485.84Show/hide
Query:  MLRTFARRAASSSSFFTSNSWVSITAQVLLPHKREFCLGVLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKLLPRERIDRL
        MLRTFARRAASSSS   SNSW+S+  Q+LLP KREFC+ VLPDGVDRSSD FARNS AMDGFISELRSHINKVLAGGGPEAV+RN+SRNKLLPRERIDRL
Subjt:  MLRTFARRAASSSSFFTSNSWVSITAQVLLPHKREFCLGVLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKLLPRERIDRL

Query:  LDPGSSFLELSQV
        LDPGSSFLELSQ+
Subjt:  LDPGSSFLELSQV

A0A5D3C5T0 Methylcrotonoyl-CoA carboxylase beta chain6.4e-4383.48Show/hide
Query:  MLRTFARRAA--SSSSFFTSNSWVSITAQVLLPHKREFCLGVLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKLLPRERID
        MLRTFA+RAA  SSSS F SNSW+S   Q+LL  KREFC  VLPDGVDRSSD FARNS AMDGFISELRSHINKVLAGGGPEAV+RN+SRNKLLPRERID
Subjt:  MLRTFARRAA--SSSSFFTSNSWVSITAQVLLPHKREFCLGVLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKLLPRERID

Query:  RLLDPGSSFLELSQV
        RLLDPGSSFLELSQ+
Subjt:  RLLDPGSSFLELSQV

A0A6J1C1W1 methylcrotonoyl-CoA carboxylase beta chain, mitochondrial1.1e-4586.84Show/hide
Query:  MLRTFARRAA-SSSSFFTSNSWVSITAQVLLPHKREFCLGVLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKLLPRERIDR
        MLRTFARRAA SSSS F SNSW+SI+ QVLLP KREFCLGVLPDGVDRSSDAFARNS AMD FIS+LRSHI+K+LAGGGPEAV+RNRSRNKLLPRERID 
Subjt:  MLRTFARRAA-SSSSFFTSNSWVSITAQVLLPHKREFCLGVLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKLLPRERIDR

Query:  LLDPGSSFLELSQV
        LLDPGSSFLELSQ+
Subjt:  LLDPGSSFLELSQV

A0A6J1EIG8 methylcrotonoyl-CoA carboxylase beta chain, mitochondrial1.3e-4888.5Show/hide
Query:  MLRTFARRAASSSSFFTSNSWVSITAQVLLPHKREFCLGVLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKLLPRERIDRL
        MLRTF+RRAASSSSFFTSNSWVSI+ Q+L P +REFCLGVLPDGVDRSSDAFARNS+AM GFI+ELRSHINKVLAGGGPEAV+RN SRNKLLPRERIDRL
Subjt:  MLRTFARRAASSSSFFTSNSWVSITAQVLLPHKREFCLGVLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKLLPRERIDRL

Query:  LDPGSSFLELSQV
        LDPGSSFLELSQ+
Subjt:  LDPGSSFLELSQV

A0A6J1JDV3 methylcrotonoyl-CoA carboxylase beta chain, mitochondrial1.8e-4585.96Show/hide
Query:  MLRTFARR-AASSSSFFTSNSWVSITAQVLLPHKREFCLGVLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKLLPRERIDR
        MLRTF+RR AASSSSFFTSNSWVSI+ Q+L   +REFC GVLPDGVDRSSDAFARNS+AM GFI+ELRSHINKVLAGGGPEAV+RN SRNKLLPRERIDR
Subjt:  MLRTFARR-AASSSSFFTSNSWVSITAQVLLPHKREFCLGVLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKLLPRERIDR

Query:  LLDPGSSFLELSQV
        LLDPGSSFLELSQ+
Subjt:  LLDPGSSFLELSQV

SwissProt top hitse value%identityAlignment
O86318 Probable biotin-dependent acyl-coenzyme A carboxylase beta2 subunit6.9e-1040.45Show/hide
Query:  VLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKLLPRERIDRLLDPGSSFLELSQVFAAYPVVFSVCCDFV
        +L   +D ++ A+   +  M G + E+ + + K LAGGGP+ V R+ +R  L PRERI+ L+DP S FLELS + AAY   F +    V
Subjt:  VLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKLLPRERIDRLLDPGSSFLELSQVFAAYPVVFSVCCDFV

P34385 Probable methylcrotonoyl-CoA carboxylase beta chain, mitochondrial1.4e-1046.38Show/hide
Query:  VDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKLLPRERIDRLLDPGSSFLELSQV
        +D SSD FA N+  M   + +L++ I+K+   GG +AV+ +RSR K+L RERID ++D GS F+E SQ+
Subjt:  VDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKLLPRERIDRLLDPGSSFLELSQV

Q3ULD5 Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial3.1e-1046.25Show/hide
Query:  LGVLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKLLPRERIDRLLDPGSSFLELSQVFAAY
        LG  PD    +S  +  N + M   +S+L      V  GG  +A  R+ SR KLLPR+RID L+DPGS FLE SQ FA Y
Subjt:  LGVLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKLLPRERIDRLLDPGSSFLELSQVFAAY

Q9LDD8 Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial2.4e-3161.48Show/hide
Query:  MLRTFARRAASSSSFFTS-NSWVSITAQVLLPH--------KREFCLGVLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKL
        MLR   RR  S+S   TS   W         P         ++ FC+G+LPDGVDR+S+AF+ NS AM+G +SELRSHI KVLAGGG EAV+RNRSRNKL
Subjt:  MLRTFARRAASSSSFFTS-NSWVSITAQVLLPH--------KREFCLGVLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKL

Query:  LPRERIDRLLDPGSSFLELSQV
        LPRERIDRLLDPGSSFLELSQ+
Subjt:  LPRERIDRLLDPGSSFLELSQV

Q9V9A7 Probable methylcrotonoyl-CoA carboxylase beta chain, mitochondrial1.6e-1144.09Show/hide
Query:  NSWVSITAQVLLPHKREFCLGVLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKLLPRERIDRLLDPGSSFLELS
        +S V + +QV L H  +    VL   VD+ S  +  N+  M   + +LR+  ++VL GGG +A+ R+ SR KLL RERI+ LLD GS FLELS
Subjt:  NSWVSITAQVLLPHKREFCLGVLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKLLPRERIDRLLDPGSSFLELS

Arabidopsis top hitse value%identityAlignment
AT4G34030.1 3-methylcrotonyl-CoA carboxylase1.7e-3261.48Show/hide
Query:  MLRTFARRAASSSSFFTS-NSWVSITAQVLLPH--------KREFCLGVLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKL
        MLR   RR  S+S   TS   W         P         ++ FC+G+LPDGVDR+S+AF+ NS AM+G +SELRSHI KVLAGGG EAV+RNRSRNKL
Subjt:  MLRTFARRAASSSSFFTS-NSWVSITAQVLLPH--------KREFCLGVLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKL

Query:  LPRERIDRLLDPGSSFLELSQV
        LPRERIDRLLDPGSSFLELSQ+
Subjt:  LPRERIDRLLDPGSSFLELSQV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAGAACATTTGCGAGAAGAGCAGCTTCTTCTTCATCCTTTTTCACCTCCAATTCATGGGTATCGATTACCGCCCAGGTCCTTCTCCCTCACAAGAGGGAATTCTG
CTTGGGTGTCCTTCCCGATGGAGTCGATCGGAGCTCCGACGCCTTCGCTCGCAATTCCGACGCCATGGACGGCTTCATTTCCGAGCTTCGATCCCACATTAACAAGGTTC
TGGCCGGCGGCGGACCTGAAGCCGTGAGGAGAAATAGGAGTAGAAATAAACTACTTCCGAGAGAACGGATTGATCGCCTTCTTGATCCTGGCTCTTCCTTCCTCGAGCTT
TCTCAGGTTTTTGCTGCTTACCCTGTTGTTTTCTCCGTTTGCTGTGATTTTGTTGGCACGAGAACTGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAGAACATTTGCGAGAAGAGCAGCTTCTTCTTCATCCTTTTTCACCTCCAATTCATGGGTATCGATTACCGCCCAGGTCCTTCTCCCTCACAAGAGGGAATTCTG
CTTGGGTGTCCTTCCCGATGGAGTCGATCGGAGCTCCGACGCCTTCGCTCGCAATTCCGACGCCATGGACGGCTTCATTTCCGAGCTTCGATCCCACATTAACAAGGTTC
TGGCCGGCGGCGGACCTGAAGCCGTGAGGAGAAATAGGAGTAGAAATAAACTACTTCCGAGAGAACGGATTGATCGCCTTCTTGATCCTGGCTCTTCCTTCCTCGAGCTT
TCTCAGGTTTTTGCTGCTTACCCTGTTGTTTTCTCCGTTTGCTGTGATTTTGTTGGCACGAGAACTGCTTAA
Protein sequenceShow/hide protein sequence
MLRTFARRAASSSSFFTSNSWVSITAQVLLPHKREFCLGVLPDGVDRSSDAFARNSDAMDGFISELRSHINKVLAGGGPEAVRRNRSRNKLLPRERIDRLLDPGSSFLEL
SQVFAAYPVVFSVCCDFVGTRTA