; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg013980 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg013980
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionH15 domain-containing protein
Genome locationscaffold3:45107582..45108454
RNA-Seq ExpressionSpg013980
SyntenySpg013980
Gene Ontology termsGO:0006334 - nucleosome assembly (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR005818 - Linker histone H1/H5, domain H15
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3970275.1 hypothetical protein CMV_006013 [Castanea mollissima]1.0e-3153.05Show/hide
Query:  NFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEKQTEEGE-------------
        N  SN  LHPPYFEMIS+AISTLK R GSSQ+AI+K I++KYK+ LP  F+K L VQ+KK V+SERL+++ NSFK++  E Q ++G+             
Subjt:  NFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEKQTEEGE-------------

Query:  ----KRKGGKTKRLSQVRTPEGKKPASAAAVGGKMKRLSQVRTPEGFKRKRDLDLGKLPTASGN
              KG KTKRL+QV+TPE KK   A A   KMKRLSQV+TPEG K+K++L   K  +AS N
Subjt:  ----KRKGGKTKRLSQVRTPEGKKPASAAAVGGKMKRLSQVRTPEGFKRKRDLDLGKLPTASGN

KAG8477625.1 hypothetical protein CXB51_030211 [Gossypium anomalum]1.6e-2951.46Show/hide
Query:  MGKALPTATNNFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEK---QTEEGE
        M KA P A  + N + A HPPY EMI +AISTLK R GSSQ AI+K +EEKY + LPP F+K L VQ+KKLV+SE+L+++ NS+KIS  EK     +E +
Subjt:  MGKALPTATNNFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEK---QTEEGE

Query:  KRKGG---------------------KTKRLSQVRTPE----GKKPASAAAVGGKMKRLSQVRTPEGFKRK
        +RKG                      KTKRLSQV+TPE     KK A  A  G K+KRLSQV+TPEG KRK
Subjt:  KRKGG---------------------KTKRLSQVRTPE----GKKPASAAAVGGKMKRLSQVRTPEGFKRK

XP_023894854.1 histone H1-like [Quercus suber]1.7e-3153.05Show/hide
Query:  NFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEKQTEEGE-------------
        N  SNS LHPPYFEMIS+AI TLK R GSSQ AI+K I++KYK+ LP  F+K L VQ+KK V+SERL+++ NSFK++  E Q ++G+             
Subjt:  NFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEKQTEEGE-------------

Query:  ----KRKGGKTKRLSQVRTPEGKKPASAAAVGGKMKRLSQVRTPEGFKRKRDLDLGKLPTASGN
              KG KTKRL+QV+TPE KK   A A   KMKRLSQV+TPEG K+K++L   K  +AS N
Subjt:  ----KRKGGKTKRLSQVRTPEGKKPASAAAVGGKMKRLSQVRTPEGFKRKRDLDLGKLPTASGN

XP_023913227.1 histone H1-like [Quercus suber]1.7e-3153.05Show/hide
Query:  NFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEKQTEEGE-------------
        N  SNS LHPPYFEMIS+AI TLK R GSSQ AI+K I++KYK+ LP  F+K L VQ+KK V+SERL+++ NSFK++  E Q ++G+             
Subjt:  NFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEKQTEEGE-------------

Query:  ----KRKGGKTKRLSQVRTPEGKKPASAAAVGGKMKRLSQVRTPEGFKRKRDLDLGKLPTASGN
              KG KTKRL+QV+TPE KK   A A   KMKRLSQV+TPEG K+K++L   K  +AS N
Subjt:  ----KRKGGKTKRLSQVRTPEGKKPASAAAVGGKMKRLSQVRTPEGFKRKRDLDLGKLPTASGN

XP_030947921.1 histone H1-like [Quercus lobata]1.1e-3051.83Show/hide
Query:  NFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEKQTEEGE-------------
        N  SNS LHPPYFEMIS+AI TLK R GSSQ AI+K I++KYK+ LP  F+  L VQ+KK V+SERL+++ NS+K++  E Q ++G+             
Subjt:  NFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEKQTEEGE-------------

Query:  ----KRKGGKTKRLSQVRTPEGKKPASAAAVGGKMKRLSQVRTPEGFKRKRDLDLGKLPTASGN
              KG KTKRL+QV+TPE KK   A A   KMKRLSQV+TPEG K+K++L   K  +AS N
Subjt:  ----KRKGGKTKRLSQVRTPEGKKPASAAAVGGKMKRLSQVRTPEGFKRKRDLDLGKLPTASGN

TrEMBL top hitse value%identityAlignment
A0A0B0MH68 Histone H13.0e-2950.29Show/hide
Query:  MGKALPTATNNFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEK---QTEEGE
        M KA P   +  N + A HPPY EMI +AISTLK R GSSQ AI+K +EEKY + LPP F+K L VQ+KKLV+SE+L+++ NS+KIS  EK     +E +
Subjt:  MGKALPTATNNFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEK---QTEEGE

Query:  KRKGG---------------------KTKRLSQVRTPE----GKKPASAAAVGGKMKRLSQVRTPEGFKRK
        +RKG                      KTKRLSQV+TPE     KK    A  G K+KRLSQV+TPEG KRK
Subjt:  KRKGG---------------------KTKRLSQVRTPE----GKKPASAAAVGGKMKRLSQVRTPEGFKRK

A0A0D2P7X6 H15 domain-containing protein2.3e-2950.88Show/hide
Query:  MGKALPTATNNFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEK---QTEEGE
        M KA P A  + N + A HPPY EMI +AISTLK R GSSQ AI+K +EEKY + LPP F+K L VQ+KKLV+SE+L+++ NS+KIS  EK     +E +
Subjt:  MGKALPTATNNFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEK---QTEEGE

Query:  KRKGG---------------------KTKRLSQVRTPE----GKKPASAAAVGGKMKRLSQVRTPEGFKRK
        +RKG                      KTKRLSQV+TPE     KK    A  G K+KRLSQV+TPEG KRK
Subjt:  KRKGG---------------------KTKRLSQVRTPE----GKKPASAAAVGGKMKRLSQVRTPEGFKRK

A0A2P5WVQ6 H15 domain-containing protein3.0e-2950.29Show/hide
Query:  MGKALPTATNNFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEK---QTEEGE
        M KA P   +  N + A HPPY EMI +AISTLK R GSSQ AI+K +EEKY + LPP F+K L VQ+KKLV+SE+L+++ NS+KIS  EK     +E +
Subjt:  MGKALPTATNNFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEK---QTEEGE

Query:  KRKGG---------------------KTKRLSQVRTPE----GKKPASAAAVGGKMKRLSQVRTPEGFKRK
        +RKG                      KTKRLSQV+TPE     KK    A  G K+KRLSQV+TPEG KRK
Subjt:  KRKGG---------------------KTKRLSQVRTPE----GKKPASAAAVGGKMKRLSQVRTPEGFKRK

A0A5D2X544 H15 domain-containing protein3.0e-2950.29Show/hide
Query:  MGKALPTATNNFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEK---QTEEGE
        M KA P   +  N + A HPPY EMI +AISTLK R GSSQ AI+K +EEKY + LPP F+K L VQ+KKLV+SE+L+++ NS+KIS  EK     +E +
Subjt:  MGKALPTATNNFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEK---QTEEGE

Query:  KRKGG---------------------KTKRLSQVRTPE----GKKPASAAAVGGKMKRLSQVRTPEGFKRK
        +RKG                      KTKRLSQV+TPE     KK    A  G K+KRLSQV+TPEG KRK
Subjt:  KRKGG---------------------KTKRLSQVRTPE----GKKPASAAAVGGKMKRLSQVRTPEGFKRK

A0A7N2N4S4 H15 domain-containing protein5.4e-3151.83Show/hide
Query:  NFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEKQTEEGE-------------
        N  SNS LHPPYFEMIS+AI TLK R GSSQ AI+K I++KYK+ LP  F+  L VQ+KK V+SERL+++ NS+K++  E Q ++G+             
Subjt:  NFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEKQTEEGE-------------

Query:  ----KRKGGKTKRLSQVRTPEGKKPASAAAVGGKMKRLSQVRTPEGFKRKRDLDLGKLPTASGN
              KG KTKRL+QV+TPE KK   A A   KMKRLSQV+TPEG K+K++L   K  +AS N
Subjt:  ----KRKGGKTKRLSQVRTPEGKKPASAAAVGGKMKRLSQVRTPEGFKRKRDLDLGKLPTASGN

SwissProt top hitse value%identityAlignment
P23444 Histone H14.7e-1641.91Show/hide
Query:  SALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEKQTEE----GEKRKGG----KTKRL
        S  H PY EM+S+AI++LK R GSS  AI+K +E+K+K  LPP FRK L VQ+KKLV   +L +V NS+K+S A K   +     +K K G    K    
Subjt:  SALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEKQTEE----GEKRKGG----KTKRL

Query:  SQVRTPEGKKPASAAAVGGKMKRLSQVRTPEGFKRK
         + +TP   KPA+      K K + + +TP   K K
Subjt:  SQVRTPEGKKPASAAAVGGKMKRLSQVRTPEGFKRK

P26568 Histone H1.11.8e-1541.84Show/hide
Query:  HPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEKQTEEGEKRKGGKTKRLSQVRTPEGKKP
        HP Y EMI DAI TLK R GSSQ AI K IEEK KE LPPTFRK L + +K+LV S +L++V  SFK+  A          K    K  ++   P  KKP
Subjt:  HPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEKQTEEGEKRKGGKTKRLSQVRTPEGKKP

Query:  ASAAAVGGKMKRLSQVRTPEGFKRKRDLDLGKLPTASGNGK
        A+ A    K K  +  +  +    K      K  TA    K
Subjt:  ASAAAVGGKMKRLSQVRTPEGFKRKRDLDLGKLPTASGNGK

P26569 Histone H1.22.8e-1646.4Show/hide
Query:  KALPTATNNFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEKQTEEGEKRKGG
        K +  A       ++ HP Y EMI DAI TLK R GSSQ AI K IEEK+K SLPPTFRK L V +K+LV SE+L++V  SFKI  A  ++    K    
Subjt:  KALPTATNNFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEKQTEEGEKRKGG

Query:  KTKRLSQVRTPEGKKPASAAAVGGK
          K+ + V  P+GK  A+ A    K
Subjt:  KTKRLSQVRTPEGKKPASAAAVGGK

P37218 Histone H11.6e-1642.07Show/hide
Query:  KALPTATNNFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKIS----------PAEKQ
        KA   A     S +  HPPYFEMI DAI TLK R GSSQ AI+K IEEK K SLP  F+K L  Q+KK V SE+L++V NS+K+           PA+K+
Subjt:  KALPTATNNFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKIS----------PAEKQ

Query:  TEEGEKRKGGKTKRLSQVRT-PEGK-KPASAAAVGGKMKRLSQVR
            + +   K K   + +  P  K KPA+ A    K K  ++ +
Subjt:  TEEGEKRKGGKTKRLSQVRT-PEGK-KPASAAAVGGKMKRLSQVR

Q9M5W4 Histone H18.9e-1545Show/hide
Query:  NSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEKQTEEGEKRKG--GKTKRLSQV
        +  ++ HP +FEMISDAISTLK R GSSQ AI+K +E+K+K+ LP  FRK L   +KKLV S +L++V NSFK+  A         +K    K K  ++ 
Subjt:  NSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEKQTEEGEKRKG--GKTKRLSQV

Query:  RTPE-GKKPASAAAVGGKMK
        +T + G KP + A V  K K
Subjt:  RTPE-GKKPASAAAVGGKMK

Arabidopsis top hitse value%identityAlignment
AT1G06760.1 winged-helix DNA-binding transcription factor family protein1.3e-1641.84Show/hide
Query:  HPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEKQTEEGEKRKGGKTKRLSQVRTPEGKKP
        HP Y EMI DAI TLK R GSSQ AI K IEEK KE LPPTFRK L + +K+LV S +L++V  SFK+  A          K    K  ++   P  KKP
Subjt:  HPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEKQTEEGEKRKGGKTKRLSQVRTPEGKKP

Query:  ASAAAVGGKMKRLSQVRTPEGFKRKRDLDLGKLPTASGNGK
        A+ A    K K  +  +  +    K      K  TA    K
Subjt:  ASAAAVGGKMKRLSQVRTPEGFKRKRDLDLGKLPTASGNGK

AT2G18050.1 histone H1-38.3e-1633.56Show/hide
Query:  KALPTATNNFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEK-----QTEEGE
        K  P A       +  HPPYF+MI +A+  LK +NGSS  AI+K IEEK+K  LP +FRKTL +Q+K  V   +L+++  S+K+S   K     Q ++ +
Subjt:  KALPTATNNFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEK-----QTEEGE

Query:  KRKGGKTKRLSQVRTPEGKKPASAAAVG--GKMKRLSQVRTPEGFK
        K    + K +++       +P    +V    K +++ + R P+  K
Subjt:  KRKGGKTKRLSQVRTPEGKKPASAAAVG--GKMKRLSQVRTPEGFK

AT2G18050.2 histone H1-31.0e-1033.06Show/hide
Query:  MISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEK-----QTEEGEKRKGGKTKRLSQVRTPEGKKPA
        MI +A+  LK +NGSS  AI+K IEEK+K  LP +FRKTL +Q+K  V   +L+++  S+K+S   K     Q ++ +K    + K +++       +P 
Subjt:  MISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEK-----QTEEGEKRKGGKTKRLSQVRTPEGKKPA

Query:  SAAAVG--GKMKRLSQVRTPEGFK
           +V    K +++ + R P+  K
Subjt:  SAAAVG--GKMKRLSQVRTPEGFK

AT2G30620.1 winged-helix DNA-binding transcription factor family protein2.0e-1746.4Show/hide
Query:  KALPTATNNFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEKQTEEGEKRKGG
        K +  A       ++ HP Y EMI DAI TLK R GSSQ AI K IEEK+K SLPPTFRK L V +K+LV SE+L++V  SFKI  A  ++    K    
Subjt:  KALPTATNNFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEKQTEEGEKRKGG

Query:  KTKRLSQVRTPEGKKPASAAAVGGK
          K+ + V  P+GK  A+ A    K
Subjt:  KTKRLSQVRTPEGKKPASAAAVGGK

AT2G30620.2 winged-helix DNA-binding transcription factor family protein3.4e-1743.71Show/hide
Query:  KALPTATNNFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKI------------SPAE
        K +  A       ++ HP Y EMI DAI TLK R GSSQ AI K IEEK+K SLPPTFRK L V +K+LV SE+L++V  SFKI            +P +
Subjt:  KALPTATNNFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKI------------SPAE

Query:  KQTEEGEKRKGGKTKRLSQVRTPEGKK---PASAAAVGGKMKRLS-QVRTP
        K+     K K  +T      RT  GKK   PA   AV  K    S +V++P
Subjt:  KQTEEGEKRKGGKTKRLSQVRTPEGKK---PASAAAVGGKMKRLS-QVRTP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAAAGCACTTCCAACTGCAACCAATAATTTCAATTCCAATTCTGCCCTTCACCCACCCTACTTCGAGATGATCAGCGATGCAATTTCGACACTCAAGCACCGGAA
CGGATCGAGCCAAGAAGCAATTTCAAAGCTAATCGAGGAAAAGTACAAGGAATCGCTTCCACCCACTTTCAGAAAAACGCTCTGTGTTCAGATAAAGAAGTTGGTCAGAT
CAGAGAGACTGATCGAAGTCAACAACTCCTTCAAGATTTCTCCTGCAGAGAAGCAGACAGAAGAGGGGGAGAAGAGGAAAGGGGGAAAGACGAAGAGGCTCAGCCAGGTC
AGGACGCCGGAAGGGAAGAAGCCGGCGTCTGCGGCGGCGGTGGGTGGGAAGATGAAGAGGCTGAGTCAGGTGAGGACGCCTGAAGGATTTAAGAGGAAGAGGGATTTGGA
TTTGGGGAAATTGCCGACTGCAAGTGGAAATGGAAAGGAACAAAAAAAGAGGAGGAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAAAGCACTTCCAACTGCAACCAATAATTTCAATTCCAATTCTGCCCTTCACCCACCCTACTTCGAGATGATCAGCGATGCAATTTCGACACTCAAGCACCGGAA
CGGATCGAGCCAAGAAGCAATTTCAAAGCTAATCGAGGAAAAGTACAAGGAATCGCTTCCACCCACTTTCAGAAAAACGCTCTGTGTTCAGATAAAGAAGTTGGTCAGAT
CAGAGAGACTGATCGAAGTCAACAACTCCTTCAAGATTTCTCCTGCAGAGAAGCAGACAGAAGAGGGGGAGAAGAGGAAAGGGGGAAAGACGAAGAGGCTCAGCCAGGTC
AGGACGCCGGAAGGGAAGAAGCCGGCGTCTGCGGCGGCGGTGGGTGGGAAGATGAAGAGGCTGAGTCAGGTGAGGACGCCTGAAGGATTTAAGAGGAAGAGGGATTTGGA
TTTGGGGAAATTGCCGACTGCAAGTGGAAATGGAAAGGAACAAAAAAAGAGGAGGAAGTGA
Protein sequenceShow/hide protein sequence
MGKALPTATNNFNSNSALHPPYFEMISDAISTLKHRNGSSQEAISKLIEEKYKESLPPTFRKTLCVQIKKLVRSERLIEVNNSFKISPAEKQTEEGEKRKGGKTKRLSQV
RTPEGKKPASAAAVGGKMKRLSQVRTPEGFKRKRDLDLGKLPTASGNGKEQKKRRK