; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg013985 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg013985
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionrRNA N-glycosidase
Genome locationscaffold3:36488219..36488755
RNA-Seq ExpressionSpg013985
SyntenySpg013985
Gene Ontology termsGO:0017148 - negative regulation of translation (biological process)
GO:0030598 - rRNA N-glycosylase activity (molecular function)
InterPro domainsIPR001574 - Ribosome-inactivating protein
IPR016138 - Ribosome-inactivating protein, subdomain 1
IPR017989 - Ribosome-inactivating protein type 1/2
IPR036041 - Ribosome-inactivating protein superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAC15886.1 ribosome inactivating protein precursor [Sambucus nigra]1.4e-1536.94Show/hide
Query:  AVLPYKPMVNLLSSQCGIL-VPFPTIISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAA--HLRWRFSFIHLSN-SSDRIIVAFDLSTASIV
        A + Y  +V L     GI  + +P+ +SF   GA S  Y DF+K +R  +   T +V  +PVL + +   ++ RF  + L+N + + + +A D++   +V
Subjt:  AVLPYKPMVNLLSSQCGIL-VPFPTIISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAA--HLRWRFSFIHLSN-SSDRIIVAFDLSTASIV

Query:  GYRSILKSYFFQEAPQEASTVLFVGTISNTLPYTANFSDLEKAAGTTRANIPLGPSP
         + +   SYFF++A Q   + LFVGT  +TLP+T N+ +LE AAGT R +I LGPSP
Subjt:  GYRSILKSYFFQEAPQEASTVLFVGTISNTLPYTANFSDLEKAAGTTRANIPLGPSP

ABG47419.1 ribosome-inactivating protein [Malus domestica]1.1e-1845.38Show/hide
Query:  ISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAAHLRWRFSFIHLSNS-SDRIIVAFDLSTASIVGYRS-ILKSYFFQEAPQEASTVLFVGTI
        ISF+  GA+S++Y  FIK +R  LT     +YDIPVLN +     RF  + LSN+ ++ I VA D+  AS+V YR+   + YF  +AP EA  +LF  T 
Subjt:  ISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAAHLRWRFSFIHLSNS-SDRIIVAFDLSTASIVGYRS-ILKSYFFQEAPQEASTVLFVGTI

Query:  SNTLPYTANFSDLEKAAGTTRANIPLGPSP
           LP+T+N+ DLEKAA  +R  IPLG +P
Subjt:  SNTLPYTANFSDLEKAAGTTRANIPLGPSP

RXH91676.1 hypothetical protein DVH24_020699 [Malus domestica]1.1e-1845.38Show/hide
Query:  ISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAAHLRWRFSFIHLSNS-SDRIIVAFDLSTASIVGYRS-ILKSYFFQEAPQEASTVLFVGTI
        ISF+  GA+S++Y  FIK +R  LT     +YDIPVLN +     RF  + LSN+ ++ I VA D+  AS+V YR+   + YF  +AP EA  +LF  T 
Subjt:  ISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAAHLRWRFSFIHLSNS-SDRIIVAFDLSTASIVGYRS-ILKSYFFQEAPQEASTVLFVGTI

Query:  SNTLPYTANFSDLEKAAGTTRANIPLGPSP
           LP+T+N+ DLEKAA  +R  IPLG +P
Subjt:  SNTLPYTANFSDLEKAAGTTRANIPLGPSP

TQD86967.1 hypothetical protein C1H46_027481 [Malus baccata]1.4e-1845.38Show/hide
Query:  ISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAAHLRWRFSFIHLSNS-SDRIIVAFDLSTASIVGYRS-ILKSYFFQEAPQEASTVLFVGTI
        ISF+  GA+S++Y  FIK +R  LT     +YDIPVLN +     RF  + LSN+ ++ I VA D+  AS+V YR+   + YF  +AP EA  +LF  T 
Subjt:  ISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAAHLRWRFSFIHLSNS-SDRIIVAFDLSTASIVGYRS-ILKSYFFQEAPQEASTVLFVGTI

Query:  SNTLPYTANFSDLEKAAGTTRANIPLGPSP
           LP+T+N+ DLEKAA  +R  IPLG +P
Subjt:  SNTLPYTANFSDLEKAAGTTRANIPLGPSP

XP_008357384.2 ribosome-inactivating protein SNAIf-like [Malus domestica]1.4e-1845.38Show/hide
Query:  ISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAAHLRWRFSFIHLSNS-SDRIIVAFDLSTASIVGYRS-ILKSYFFQEAPQEASTVLFVGTI
        ISF+  GA+S++Y  FIK +R  LT     +YDIPVLN +     RF  + LSN+ ++ I VA D+  AS+V YR+   + YF  +AP EA  +LF  T 
Subjt:  ISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAAHLRWRFSFIHLSNS-SDRIIVAFDLSTASIVGYRS-ILKSYFFQEAPQEASTVLFVGTI

Query:  SNTLPYTANFSDLEKAAGTTRANIPLGPSP
           LP+T+N+ DLEKAA  +R  IPLG +P
Subjt:  SNTLPYTANFSDLEKAAGTTRANIPLGPSP

TrEMBL top hitse value%identityAlignment
A0A498J952 rRNA N-glycosidase5.1e-1945.38Show/hide
Query:  ISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAAHLRWRFSFIHLSNS-SDRIIVAFDLSTASIVGYRS-ILKSYFFQEAPQEASTVLFVGTI
        ISF+  GA+S++Y  FIK +R  LT     +YDIPVLN +     RF  + LSN+ ++ I VA D+  AS+V YR+   + YF  +AP EA  +LF  T 
Subjt:  ISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAAHLRWRFSFIHLSNS-SDRIIVAFDLSTASIVGYRS-ILKSYFFQEAPQEASTVLFVGTI

Query:  SNTLPYTANFSDLEKAAGTTRANIPLGPSP
           LP+T+N+ DLEKAA  +R  IPLG +P
Subjt:  SNTLPYTANFSDLEKAAGTTRANIPLGPSP

A0A540LKG3 rRNA N-glycosidase6.7e-1945.38Show/hide
Query:  ISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAAHLRWRFSFIHLSNS-SDRIIVAFDLSTASIVGYRS-ILKSYFFQEAPQEASTVLFVGTI
        ISF+  GA+S++Y  FIK +R  LT     +YDIPVLN +     RF  + LSN+ ++ I VA D+  AS+V YR+   + YF  +AP EA  +LF  T 
Subjt:  ISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAAHLRWRFSFIHLSNS-SDRIIVAFDLSTASIVGYRS-ILKSYFFQEAPQEASTVLFVGTI

Query:  SNTLPYTANFSDLEKAAGTTRANIPLGPSP
           LP+T+N+ DLEKAA  +R  IPLG +P
Subjt:  SNTLPYTANFSDLEKAAGTTRANIPLGPSP

A0A6J1DVE7 rRNA N-glycosidase1.5e-1540.14Show/hide
Query:  ISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAAHLRWRFSFIHLSN-SSDRIIVAFDLSTASIVGYRSILKSYFFQEAPQEASTVLFVGTIS
        +SF+  G++S+ Y  FIK VR  LT  ++ VYDIPVL   A    RF  +HL+N +S+ IIVA D+    +V YR+   +YF  +A  EA  VLF G   
Subjt:  ISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAAHLRWRFSFIHLSN-SSDRIIVAFDLSTASIVGYRSILKSYFFQEAPQEASTVLFVGTIS

Query:  NTLPYTANFSDLEKAAGTTRANIPLGPSPFGDTM------RTTTSVP
          L Y  N+  LE AA  +R  I LG S    ++         TSVP
Subjt:  NTLPYTANFSDLEKAAGTTRANIPLGPSPFGDTM------RTTTSVP

O04367 rRNA N-glycosidase6.9e-1636.94Show/hide
Query:  AVLPYKPMVNLLSSQCGIL-VPFPTIISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAA--HLRWRFSFIHLSN-SSDRIIVAFDLSTASIV
        A + Y  +V L     GI  + +P+ +SF   GA S  Y DF+K +R  +   T +V  +PVL + +   ++ RF  + L+N + + + +A D++   +V
Subjt:  AVLPYKPMVNLLSSQCGIL-VPFPTIISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAA--HLRWRFSFIHLSN-SSDRIIVAFDLSTASIV

Query:  GYRSILKSYFFQEAPQEASTVLFVGTISNTLPYTANFSDLEKAAGTTRANIPLGPSP
         + +   SYFF++A Q   + LFVGT  +TLP+T N+ +LE AAGT R +I LGPSP
Subjt:  GYRSILKSYFFQEAPQEASTVLFVGTISNTLPYTANFSDLEKAAGTTRANIPLGPSP

Q0ZAI5 rRNA N-glycosidase5.1e-1945.38Show/hide
Query:  ISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAAHLRWRFSFIHLSNS-SDRIIVAFDLSTASIVGYRS-ILKSYFFQEAPQEASTVLFVGTI
        ISF+  GA+S++Y  FIK +R  LT     +YDIPVLN +     RF  + LSN+ ++ I VA D+  AS+V YR+   + YF  +AP EA  +LF  T 
Subjt:  ISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAAHLRWRFSFIHLSNS-SDRIIVAFDLSTASIVGYRS-ILKSYFFQEAPQEASTVLFVGTI

Query:  SNTLPYTANFSDLEKAAGTTRANIPLGPSP
           LP+T+N+ DLEKAA  +R  IPLG +P
Subjt:  SNTLPYTANFSDLEKAAGTTRANIPLGPSP

SwissProt top hitse value%identityAlignment
P09989 Ribosome-inactivating protein alpha-trichosanthin1.2e-1742.97Show/hide
Query:  ISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAAHLRWRFSFIHLSNSSDRII-VAFDLSTASIVGYRSILKSYFFQEA-PQEASTVLFVGTI
        +SF   GA+S +YG FI  +R+ L  N +++YDIP+L  +     R++ IHL+N +D  I VA D++   I+GYR+   SYFF EA   EA+  +F   +
Subjt:  ISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAAHLRWRFSFIHLSNSSDRII-VAFDLSTASIVGYRSILKSYFFQEA-PQEASTVLFVGTI

Query:  SN-TLPYTANFSDLEKAAGTTRANIPLG
           TLPY+ N+  L+ AAG  R NIPLG
Subjt:  SN-TLPYTANFSDLEKAAGTTRANIPLG

P11140 Abrin-a2.3e-1639.84Show/hide
Query:  ISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAAHL--RWRFSFIHLSNS-SDRIIVAFDLSTASIVGYRSILKSYFFQEAPQEASTVLFVGT
        I F+ +GA+S +Y  FI+ +R+ L      ++DIPVL     L  R R+  + LSNS ++ I V  D++ A +V YR+  +SYF ++AP  AS  LF GT
Subjt:  ISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAAHL--RWRFSFIHLSNS-SDRIIVAFDLSTASIVGYRSILKSYFFQEAPQEASTVLFVGT

Query:  ISNTLPYTANFSDLEKAAGTTRANIPLG
          ++LP+   + DLE+ A  +R  IPLG
Subjt:  ISNTLPYTANFSDLEKAAGTTRANIPLG

P24478 Ribosome-inactivating protein karasurin-C1.3e-1642.19Show/hide
Query:  ISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAAHLRWRFSFIHLSNSSDRII-VAFDLSTASIVGYRSILKSYFFQEA-PQEASTVLFVGTI
        +SF   GA+S +YG FI  +R+ L +  K +YDIP+L        R++ IHL+N +D  I VA D++   ++GYR+   SYFF EA   EA+  +F    
Subjt:  ISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAAHLRWRFSFIHLSNSSDRII-VAFDLSTASIVGYRSILKSYFFQEA-PQEASTVLFVGTI

Query:  SN-TLPYTANFSDLEKAAGTTRANIPLG
           TLPY+ N+  L+ AAG  R NIPLG
Subjt:  SN-TLPYTANFSDLEKAAGTTRANIPLG

P33183 Nigrin b4.6e-1735.03Show/hide
Query:  AVLPYKPMVNLLSSQCGIL-VPFPTIISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAA--HLRWRFSFIHLSN-SSDRIIVAFDLSTASIV
        A + Y  +V L     GI  + +P+ +SF   GA S  Y DF+  +R+ +   T +V  +PVL + +   ++ RF  + L+N + + + +A D++   +V
Subjt:  AVLPYKPMVNLLSSQCGIL-VPFPTIISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAA--HLRWRFSFIHLSN-SSDRIIVAFDLSTASIV

Query:  GYRSILKSYFFQEAPQEASTVLFVGTISNTLPYTANFSDLEKAAGTTRANIPLGPSP
         +     SYFF++A +   + LFVGT  NTL +T N+ +LE AA T R +I LGPSP
Subjt:  GYRSILKSYFFQEAPQEASTVLFVGTISNTLPYTANFSDLEKAAGTTRANIPLGPSP

Q06077 Abrin-b1.7e-1641.09Show/hide
Query:  IISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAAHL--RWRFSFIHLSNS-SDRIIVAFDLSTASIVGYRSILKSYFFQEAPQEASTVLFVG
        +I FT +GA+S +Y  FI+ +RQ LT     ++ IPVL     L  R R+  + LSNS ++ I    D+S A +V YR+  +SYF ++AP  AS  LF G
Subjt:  IISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAAHL--RWRFSFIHLSNS-SDRIIVAFDLSTASIVGYRSILKSYFFQEAPQEASTVLFVG

Query:  TISNTLPYTANFSDLEKAAGTTRANIPLG
        T   +L +  ++ DLE+ A  TR  IPLG
Subjt:  TISNTLPYTANFSDLEKAAGTTRANIPLG

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATAGCTGTCCTCCCTTATAAACCTATGGTCAACCTCTTATCTAGCCAATGTGGGATTTTGGTCCCATTCCCAACAATTATTTCCTTCACCCCACAAGGTGCTTC
AAGCGATGCTTATGGAGACTTCATAAAACAAGTCCGTCAACATCTCACGTTCAACACCAAACAAGTCTATGACATTCCTGTTTTGAACCAAGCCGCACACCTTCGATGGC
GCTTCTCCTTCATTCACCTTTCCAACTCCTCCGATCGCATCATTGTTGCCTTCGATTTGTCGACCGCTTCCATTGTCGGCTATCGCTCAATTTTAAAATCCTACTTCTTC
CAAGAAGCTCCTCAAGAAGCCTCTACGGTCCTTTTCGTTGGTACCATTAGCAACACACTGCCGTACACGGCCAATTTCAGCGACCTTGAAAAGGCTGCAGGCACTACAAG
GGCTAATATTCCCCTTGGACCTTCCCCCTTCGGCGACACCATGCGAACTACGACGAGCGTTCCGCTCCTCGGTCGCTACTTGTCATCATTCAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGATAGCTGTCCTCCCTTATAAACCTATGGTCAACCTCTTATCTAGCCAATGTGGGATTTTGGTCCCATTCCCAACAATTATTTCCTTCACCCCACAAGGTGCTTC
AAGCGATGCTTATGGAGACTTCATAAAACAAGTCCGTCAACATCTCACGTTCAACACCAAACAAGTCTATGACATTCCTGTTTTGAACCAAGCCGCACACCTTCGATGGC
GCTTCTCCTTCATTCACCTTTCCAACTCCTCCGATCGCATCATTGTTGCCTTCGATTTGTCGACCGCTTCCATTGTCGGCTATCGCTCAATTTTAAAATCCTACTTCTTC
CAAGAAGCTCCTCAAGAAGCCTCTACGGTCCTTTTCGTTGGTACCATTAGCAACACACTGCCGTACACGGCCAATTTCAGCGACCTTGAAAAGGCTGCAGGCACTACAAG
GGCTAATATTCCCCTTGGACCTTCCCCCTTCGGCGACACCATGCGAACTACGACGAGCGTTCCGCTCCTCGGTCGCTACTTGTCATCATTCAAATGA
Protein sequenceShow/hide protein sequence
MEIAVLPYKPMVNLLSSQCGILVPFPTIISFTPQGASSDAYGDFIKQVRQHLTFNTKQVYDIPVLNQAAHLRWRFSFIHLSNSSDRIIVAFDLSTASIVGYRSILKSYFF
QEAPQEASTVLFVGTISNTLPYTANFSDLEKAAGTTRANIPLGPSPFGDTMRTTTSVPLLGRYLSSFK