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Spg014096 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg014096
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description60S ribosomal protein L38
Genome locationscaffold3:37716609..37719403
RNA-Seq ExpressionSpg014096
SyntenySpg014096
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022618 - ribonucleoprotein complex assembly (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002675 - Ribosomal protein L38e
IPR038464 - Ribosomal protein L38e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CBI36730.3 unnamed protein product, partial [Vitis vinifera]3.6e-2682.5Show/hide
Query:  FLGEKNGFSVSALPPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEFEVE
        F+ +  GFS    PPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKADKLKQSLPP   V+
Subjt:  FLGEKNGFSVSALPPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEFEVE

EXB88161.1 60S ribosomal protein L38 [Morus notabilis]3.6e-2695.45Show/hide
Query:  VSALPPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP
        V+ +PPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP
Subjt:  VSALPPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP

KAG5404666.1 hypothetical protein IGI04_010785 [Brassica rapa subsp. trilocularis]2.1e-2679.52Show/hide
Query:  QTSNFRSTFLGEKNGFSVSALPPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP
        Q ++ R   L  K+G S  +L PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCSKYLYTLCVFD EKADKLKQSLPP
Subjt:  QTSNFRSTFLGEKNGFSVSALPPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP

RVW20725.1 60S ribosomal protein L38 [Vitis vinifera]1.6e-2682.5Show/hide
Query:  FLGEKNGFSVSALPPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEFEVE
        F+ +  GFS    PPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKADKLKQSLPP   V+
Subjt:  FLGEKNGFSVSALPPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEFEVE

XP_024031168.1 60S ribosomal protein L38-like [Morus notabilis]2.7e-2680.49Show/hide
Query:  STFLGEKNGFSVSALPPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEFEVE
        S  + E +G S+ +  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP   V+
Subjt:  STFLGEKNGFSVSALPPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEFEVE

TrEMBL top hitse value%identityAlignment
A0A438CBV2 60S ribosomal protein L387.8e-2782.5Show/hide
Query:  FLGEKNGFSVSALPPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEFEVE
        F+ +  GFS    PPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKADKLKQSLPP   V+
Subjt:  FLGEKNGFSVSALPPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEFEVE

A0A438HVN8 60S ribosomal protein L382.3e-2677.65Show/hide
Query:  NFRSTFLGEKNGFSVSALPPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEFEVE
        NF      +K   S    PPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKADKLKQSLPP   V+
Subjt:  NFRSTFLGEKNGFSVSALPPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEFEVE

B9RM38 60S ribosomal protein L38, putative3.9e-2690.14Show/hide
Query:  VSALPPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEFEVE
        +S L PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP   V+
Subjt:  VSALPPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEFEVE

D7U1W4 Uncharacterized protein1.7e-2682.5Show/hide
Query:  FLGEKNGFSVSALPPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEFEVE
        F+ +  GFS    PPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFD+EKADKLKQSLPP   V+
Subjt:  FLGEKNGFSVSALPPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEFEVE

W9RMX2 60S ribosomal protein L381.7e-2695.45Show/hide
Query:  VSALPPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP
        V+ +PPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP
Subjt:  VSALPPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPP

SwissProt top hitse value%identityAlignment
O22860 60S ribosomal protein L385.7e-2789.39Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEFEVE
        PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPP   V+
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEFEVE

P46291 60S ribosomal protein L387.0e-2584.85Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEFEVE
        PKQIHEIKDFLLTARRKDAR+VKIK++KD+VKFKVRCSKYLYTLCV D EKADKLKQSLPP   V+
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEFEVE

P63173 60S ribosomal protein L381.4e-2074.24Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEFEVE
        P++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPP   V+
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEFEVE

Q32PB9 60S ribosomal protein L381.4e-2074.24Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEFEVE
        P++I EIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKA+KLKQSLPP   V+
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEFEVE

Q95V84 60S ribosomal protein L388.6e-2380.3Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEFEVE
        PKQIHEIKDFLLTARRKDA+SVKIK++KD VKFKVRCS+YLYTL + D EKADKLKQSLPP   V+
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEFEVE

Arabidopsis top hitse value%identityAlignment
AT2G43460.1 Ribosomal L38e protein family4.1e-2889.39Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEFEVE
        PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPP   V+
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEFEVE

AT3G59540.1 Ribosomal L38e protein family4.1e-2889.39Show/hide
Query:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEFEVE
        PKQIHEIKDFLLTARRKDARSVKIKRSKD+VKFKVRCS+YLYTLCVFD EKADKLKQSLPP   V+
Subjt:  PKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEFEVE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCACGCTATCCATCCCTTTTCAAACCAGCAATTTTCGGTCTACATTTTTGGGAGAGAAAAATGGATTCTCTGTTTCTGCATTGCCTCCGAAGCAAATTCATGA
GATCAAAGATTTCCTTCTCACTGCAAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAGTATCTTTATA
CTCTTTGTGTTTTCGACTCTGAGAAGGCAGACAAGTTGAAGCAATCTCTTCCACCAGAATTCGAGGTTGAAGGAACTTCAGATTTCTTGGAGGAGCTTAGAGGTTTGATA
TGGGGAGTTGTGGGAGGTTTGAGTGTGCAAGATCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCACGCTATCCATCCCTTTTCAAACCAGCAATTTTCGGTCTACATTTTTGGGAGAGAAAAATGGATTCTCTGTTTCTGCATTGCCTCCGAAGCAAATTCATGA
GATCAAAGATTTCCTTCTCACTGCAAGAAGGAAGGATGCTCGTTCTGTGAAAATTAAGAGGAGCAAAGATGTGGTGAAGTTCAAAGTTCGATGCTCCAAGTATCTTTATA
CTCTTTGTGTTTTCGACTCTGAGAAGGCAGACAAGTTGAAGCAATCTCTTCCACCAGAATTCGAGGTTGAAGGAACTTCAGATTTCTTGGAGGAGCTTAGAGGTTTGATA
TGGGGAGTTGTGGGAGGTTTGAGTGTGCAAGATCTGTGA
Protein sequenceShow/hide protein sequence
MASTLSIPFQTSNFRSTFLGEKNGFSVSALPPKQIHEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPEFEVEGTSDFLEELRGLI
WGVVGGLSVQDL