CuGenDBv2

Gene ID	Spg014155
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	trigger factor-like isoform X3
Genome location	scaffold3:38148148..38156389
RNA-Seq Expression	Spg014155
Synteny	Spg014155
Gene Ontology terms	GO:0000413 - protein peptidyl-prolyl isomerization (biological process) GO:0015031 - protein transport (biological process) GO:0043335 - protein unfolding (biological process) GO:0051083 - 'de novo' cotranslational protein folding (biological process) GO:0061077 - chaperone-mediated protein folding (biological process) GO:0003755 - peptidyl-prolyl cis-trans isomerase activity (molecular function) GO:0043022 - ribosome binding (molecular function) GO:0044183 - protein folding chaperone (molecular function)
InterPro domains	IPR005215 - Trigger factor IPR008881 - Trigger factor, ribosome-binding, bacterial IPR036611 - Trigger factor ribosome-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022155448.1 uncharacterized protein LOC111022592 isoform X1 [Momordica charantia]

8.9e-76

92.22

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Query:  YSSRKFSLSKSNRYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLE
        YSSRK SLS+SNR+LPAACAVLSEDVSVSSSQF+DFSVT A  +NENRELKIRVEVSG KTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLE
Subjt:  YSSRKFSLSKSNRYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLE

Query:  ILGPSKVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETN
        ILGPS+VYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDE FFFDAIIQL +TN
Subjt:  ILGPSKVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETN

XP_038876223.1 trigger factor isoform X1 [Benincasa hispida]

1.1e-78

92.9

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Query:  MRYSSRKFSLSKSNRYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDIL
        M Y SRKFSLSK+NRYLPAACAVLSEDVSVSSSQF+DFSVT+ATN  EN+ELKIRVEVSGAKTRAIFNNVFD+MVAEAQPIPGFRRVKGGKTPNIPRDIL
Subjt:  MRYSSRKFSLSKSNRYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDIL

Query:  LEILGPSKVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETN
        LEILGPSKVYKQVI++VINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKE+N
Subjt:  LEILGPSKVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETN

XP_038876224.1 trigger factor isoform X2 [Benincasa hispida]

8.0e-77

92.31

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Query:  MRYSSRKFSLSKSNRYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDIL
        M Y SRKFSLSK+NRYLPAACAVLSEDVSVSSSQF+DFSVT+ATN  EN+ELKIRVEVSGAKTRAIFNNVFD+MVAEAQPIPGFRRVKGGKTPNIPRDIL
Subjt:  MRYSSRKFSLSKSNRYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDIL

Query:  LEILGPSKVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETN
        LEILGPSKVYKQVI++VINSTVAAYVEK EALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKE+N
Subjt:  LEILGPSKVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETN

XP_038876225.1 trigger factor isoform X3 [Benincasa hispida]

1.1e-78

92.9

Show/hide

Query:  MRYSSRKFSLSKSNRYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDIL
        M Y SRKFSLSK+NRYLPAACAVLSEDVSVSSSQF+DFSVT+ATN  EN+ELKIRVEVSGAKTRAIFNNVFD+MVAEAQPIPGFRRVKGGKTPNIPRDIL
Subjt:  MRYSSRKFSLSKSNRYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDIL

Query:  LEILGPSKVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETN
        LEILGPSKVYKQVI++VINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKE+N
Subjt:  LEILGPSKVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETN

XP_038876226.1 trigger factor isoform X4 [Benincasa hispida]

1.1e-78

92.9

Show/hide

Query:  MRYSSRKFSLSKSNRYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDIL
        M Y SRKFSLSK+NRYLPAACAVLSEDVSVSSSQF+DFSVT+ATN  EN+ELKIRVEVSGAKTRAIFNNVFD+MVAEAQPIPGFRRVKGGKTPNIPRDIL
Subjt:  MRYSSRKFSLSKSNRYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDIL

Query:  LEILGPSKVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETN
        LEILGPSKVYKQVI++VINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKE+N
Subjt:  LEILGPSKVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KBW0 Trigger_N domain-containing protein

4.0e-74

89.35

Show/hide

Query:  MRYSSRKFSLSKSNRYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDIL
        +RY SRK SLSK+NRYLPAACAVLSE+VSVSSSQF+DFSVT+ TN  EN+ELKIRVEVSGAKTRAIFN VFD MVAEAQPIPGFRRVKGGKTPNIPRDIL
Subjt:  MRYSSRKFSLSKSNRYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDIL

Query:  LEILGPSKVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETN
        LEILGPSKVYKQVIK+VINSTVAAYVEK EALKVGKDLRI+QSYEDLEDQFEPDE FFFDAIIQLKE+N
Subjt:  LEILGPSKVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETN

A0A1S3CCS7 trigger factor-like isoform X3

1.4e-74

88.17

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Query:  MRYSSRKFSLSKSNRYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDIL
        ++Y S K SLSK+NRYLPAACAVLSE+ SVSSSQF+DFSVT+ TN  EN+ELKIRVEVSG KTRAIFN VFD MVAEAQPIPGFRRVKGGKTPNIPRDIL
Subjt:  MRYSSRKFSLSKSNRYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDIL

Query:  LEILGPSKVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETN
        LEILGPSKVYKQVIK+VINSTVAAYVEKQEALKVGKDLRI+QSYEDLEDQFEPDEKFFFDAIIQLKE+N
Subjt:  LEILGPSKVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETN

A0A5D3DLR6 Trigger factor-like isoform X3

1.4e-74

88.17

Show/hide

Query:  MRYSSRKFSLSKSNRYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDIL
        ++Y S K SLSK+NRYLPAACAVLSE+ SVSSSQF+DFSVT+ TN  EN+ELKIRVEVSG KTRAIFN VFD MVAEAQPIPGFRRVKGGKTPNIPRDIL
Subjt:  MRYSSRKFSLSKSNRYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDIL

Query:  LEILGPSKVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETN
        LEILGPSKVYKQVIK+VINSTVAAYVEKQEALKVGKDLRI+QSYEDLEDQFEPDEKFFFDAIIQLKE+N
Subjt:  LEILGPSKVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETN

A0A6J1DMZ5 uncharacterized protein LOC111022592 isoform X1

4.3e-76

92.22

Show/hide

Query:  YSSRKFSLSKSNRYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLE
        YSSRK SLS+SNR+LPAACAVLSEDVSVSSSQF+DFSVT A  +NENRELKIRVEVSG KTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLE
Subjt:  YSSRKFSLSKSNRYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLE

Query:  ILGPSKVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETN
        ILGPS+VYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDE FFFDAIIQL +TN
Subjt:  ILGPSKVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETN

A0A6J1DPD9 uncharacterized protein LOC111022592 isoform X4

3.1e-74

91.62

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Query:  YSSRKFSLSKSNRYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLE
        YSSRK SL +SNR+LPAACAVLSEDVSVSSSQF+DFSVT A  +NENRELKIRVEVSG KTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLE
Subjt:  YSSRKFSLSKSNRYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLE

Query:  ILGPSKVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETN
        ILGPS+VYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDE FFFDAIIQL +TN
Subjt:  ILGPSKVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETN

SwissProt top hits

e value

%identity

Alignment

B1XL18 Trigger factor

2.5e-04

23.73

Show/hide

Query:  ELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQ
        ++ + +EV    T+  +++   ++ A    +PGFR+ K      +P+ IL++ LGP+++   V++ +I+ ++ A +  QE ++   + +++ S++DL   
Subjt:  ELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQ

Query:  FEPDEKFFFDAIIQLKET
        ++P E   F A + +  T
Subjt:  FEPDEKFFFDAIIQLKET

Q8DLI3 Trigger factor

4.1e-07

29.27

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Query:  TNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQS
        T    N +L   +EVSG  ++ ++N V ++++   Q +PGFR+ K       PR ++L+ LG  ++    ++K+I   V   VEK     +G +L +   
Subjt:  TNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQS

Query:  YEDLEDQFEPDEKFFFDAIIQLK
          +L DQF P E F F     ++
Subjt:  YEDLEDQFEPDEKFFFDAIIQLK

Arabidopsis top hits

e value

%identity

Alignment

AT2G30695.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 253 Blast hits to 253 proteins in 72 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).

3.6e-43

56.71

Show/hide

Query:  RKFSLSKSNRYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILG
        +K     +NR   A CA  S+   V +S  D+  +        + E+K+ V+VSG KT+ +FN+VF++MVA AQPIPGFRRVKGGKTPNIP+D+LLEILG
Subjt:  RKFSLSKSNRYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILG

Query:  PSKVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETN
         SKVYKQVIKK+INS +  YV KQE LKVGK+L + QSYEDLE+ FEP E F FDA I+L+E +
Subjt:  PSKVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETN

AT2G30695.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein folding, protein transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trigger factor, ribosome-binding, bacterial (InterPro:IPR008881); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

3.6e-43

56.71

Show/hide

Query:  RKFSLSKSNRYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILG
        +K     +NR   A CA  S+   V +S  D+  +        + E+K+ V+VSG KT+ +FN+VF++MVA AQPIPGFRRVKGGKTPNIP+D+LLEILG
Subjt:  RKFSLSKSNRYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILG

Query:  PSKVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETN
         SKVYKQVIKK+INS +  YV KQE LKVGK+L + QSYEDLE+ FEP E F FDA I+L+E +
Subjt:  PSKVYKQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETN

Sequences

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CDS sequence

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ATGAGATACAGTAGTAGAAAATTTTCTTTGAGTAAAAGTAACAGGTATCTTCCCGCTGCGTGTGCTGTGTTATCAGAAGATGTGAGTGTTTCTTCTTCTCAGTTTGACGA
CTTTTCTGTCACTGATGCTACTAATATCAATGAGAATAGAGAACTAAAGATTCGTGTAGAGGTGTCTGGTGCCAAAACTCGAGCAATTTTCAACAATGTCTTTGATGAAA
TGGTTGCTGAAGCCCAGCCTATTCCAGGCTTTCGAAGAGTGAAAGGAGGAAAGACACCAAACATACCCCGAGACATTCTATTAGAGATACTGGGACCTTCTAAGGTTTAC
AAGCAAGTTATCAAGAAAGTTATCAACTCCACTGTGGCTGCATATGTGGAAAAGCAGGAAGCTCTAAAAGTGGGTAAAGACTTGAGAATAGAACAAAGCTATGAGGATCT
TGAAGACCAATTTGAACCAGATGAAAAGTTCTTTTTTGATGCCATTATTCAGCTCAAGGAAACAAACTGA

mRNA sequence

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Protein sequence

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MRYSSRKFSLSKSNRYLPAACAVLSEDVSVSSSQFDDFSVTDATNINENRELKIRVEVSGAKTRAIFNNVFDEMVAEAQPIPGFRRVKGGKTPNIPRDILLEILGPSKVY
KQVIKKVINSTVAAYVEKQEALKVGKDLRIEQSYEDLEDQFEPDEKFFFDAIIQLKETN

Spg014155 (gene) of Sponge gourd (cylindrica) v1 genome