CuGenDBv2

Gene ID	Spg014187
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Peptide chain release factor 1
Genome location	scaffold3:44285479..44286202
RNA-Seq Expression	Spg014187
Synteny	Spg014187
Gene Ontology terms	GO:0006415 - translational termination (biological process) GO:0009658 - chloroplast organization (biological process) GO:0010027 - thylakoid membrane organization (biological process) GO:0032544 - plastid translation (biological process) GO:0009507 - chloroplast (cellular component) GO:0016149 - translation release factor activity, codon specific (molecular function)
InterPro domains	IPR005139 - Peptide chain release factor

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6593177.1 Peptide chain release factor APG3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

5.0e-24

90.41

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Query:  ALAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLV
        ALAKESGNDEDMAEMIALE+SSLSS+LKDIEEKLK   VMLLPSDPLDARN MLEVRA TGGDEAGIWAGDLV
Subjt:  ALAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLV

KAG7025567.1 Peptide chain release factor APG3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

5.0e-24

90.41

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Query:  ALAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLV
        ALAKESGNDEDMAEMIALE+SSLSS+LKDIEEKLK   VMLLPSDPLDARN MLEVRA TGGDEAGIWAGDLV
Subjt:  ALAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLV

XP_022959786.1 peptide chain release factor APG3, chloroplastic [Cucurbita moschata]

5.0e-24

90.41

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Query:  ALAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLV
        ALAKESGNDEDMAEMIALE+SSLSS+LKDIEEKLK   VMLLPSDPLDARN MLEVRA TGGDEAGIWAGDLV
Subjt:  ALAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLV

XP_023514061.1 peptide chain release factor APG3, chloroplastic [Cucurbita pepo subsp. pepo]

5.0e-24

90.41

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Query:  ALAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLV
        ALAKESGNDEDMAEMIALE+SSLSS+LKDIEEKLK   VMLLPSDPLDARN MLEVRA TGGDEAGIWAGDLV
Subjt:  ALAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLV

XP_031745234.1 peptide chain release factor APG3, chloroplastic [Cucumis sativus]

1.5e-23

89.04

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Query:  ALAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLV
        AL+KESGNDEDM EMIALE+SSLSSELKDIEEKLK   VMLLPSDPLDARN MLEVRA TGGDEAGIWAGDLV
Subjt:  ALAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLV

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BRZ7 peptide chain release factor APG3, chloroplastic

7.0e-24

89.04

Show/hide

Query:  ALAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLV
        AL+KESGNDEDM EMIALE+SSLSSELKDIEEKLK   VMLLPSDPLDARN MLEVRA TGGDEAGIWAGDLV
Subjt:  ALAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLV

A0A2P2KRT8 Peptide chain release factor APG3ic-like

1.9e-24

77.22

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Query:  LAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLVGTCFFYP
        +AKE G+DEDMAEMIA E++SLS+E+K++EEKLKVL   LLPSDPLDARN MLEVRA TGGDEAG+WAGDLVGTCF +P
Subjt:  LAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLVGTCFFYP

A0A5A7VLD6 Peptide chain release factor APG3

7.0e-24

89.04

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Query:  ALAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLV
        AL+KESGNDEDM EMIALE+SSLSSELKDIEEKLK   VMLLPSDPLDARN MLEVRA TGGDEAGIWAGDLV
Subjt:  ALAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLV

A0A6J1H5U4 peptide chain release factor APG3, chloroplastic

2.4e-24

90.41

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Query:  ALAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLV
        ALAKESGNDEDMAEMIALE+SSLSS+LKDIEEKLK   VMLLPSDPLDARN MLEVRA TGGDEAGIWAGDLV
Subjt:  ALAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLV

A0A6J1KZW8 peptide chain release factor APG3, chloroplastic

2.4e-24

90.41

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Query:  ALAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLV
        ALAKESGNDEDMAEMIALE+SSLSS+LKDIEEKLK   VMLLPSDPLDARN MLEVRA TGGDEAGIWAGDLV
Subjt:  ALAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLV

SwissProt top hits

e value

%identity

Alignment

B0JYC5 Peptide chain release factor 1

1.1e-13

55.71

Show/hide

Query:  KESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLV
        KES +D ++ EM ALE++ L  ++  +E++L +L   LLP DPLD +N MLE+RA TGGDEA IWAGDLV
Subjt:  KESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLV

B7K205 Peptide chain release factor 1

5.8e-15

56.94

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Query:  LAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLV
        + K++G D +M EM ALE+  L+ +L+++E+KLK+L   LLP DP D +N MLE+RA TGGDEA IWAGDLV
Subjt:  LAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLV

B7KI17 Peptide chain release factor 1

3.4e-15

59.72

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Query:  LAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLV
        + KE+G D +M EM ALE+  L  +L+ +E KLKVL   LLP DP D +N MLE+RA TGGDEA IWAGDLV
Subjt:  LAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLV

P74707 Peptide chain release factor 1

2.9e-14

55.56

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Query:  LAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLV
        + KESGND +M EM  LE+  L + + ++E++L +L   LLP DP D +N MLE+RA TGGDEA IWAGDLV
Subjt:  LAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLV

Q8RX79 Peptide chain release factor APG3, chloroplastic

1.3e-19

69.44

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Query:  LAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLV
        LAKE+G+DEDMAEMI  E++SL+ E++++E++LKVL   LLPSDPLDARN +LEVRA TGGDEA IW GDLV
Subjt:  LAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLV

Arabidopsis top hits

e value

%identity

Alignment

AT2G47020.1 Peptide chain release factor 1

1.0e-06

39.19

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Query:  MSALAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDL
        + +L  ES +D+DM ++   E+     E K ++    +LL  LLP D  D R+ +LEVRA TGG+EA ++A D+
Subjt:  MSALAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDL

AT2G47020.2 Peptide chain release factor 1

1.0e-06

39.19

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Query:  MSALAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDL
        + +L  ES +D+DM ++   E+     E K ++    +LL  LLP D  D R+ +LEVRA TGG+EA ++A D+
Subjt:  MSALAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDL

AT3G62910.1 Peptide chain release factor 1

9.4e-21

69.44

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Query:  LAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLV
        LAKE+G+DEDMAEMI  E++SL+ E++++E++LKVL   LLPSDPLDARN +LEVRA TGGDEA IW GDLV
Subjt:  LAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLV

Sequences

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CDS sequence

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ATGTCAGCCTTAGCAAAAGAGAGTGGGAATGACGAGGATATGGCAGAGATGATTGCTTTAGAAATGAGTTCTTTGTCCAGTGAACTCAAAGATATTGAGGAGAAGCTTAA
GGTGCTTTTGGTGATGTTGCTTCCATCCGATCCTCTTGATGCCAGAAATACTATGCTTGAAGTCCGGGCAAGTACGGGGGGTGATGAAGCTGGAATCTGGGCTGGTGATC
TTGTAGGTACATGCTTCTTTTATCCTTAA

mRNA sequence

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Protein sequence

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MSALAKESGNDEDMAEMIALEMSSLSSELKDIEEKLKVLLVMLLPSDPLDARNTMLEVRASTGGDEAGIWAGDLVGTCFFYP

Spg014187 (gene) of Sponge gourd (cylindrica) v1 genome