; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg014206 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg014206
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionprotein RADIALIS-like 3
Genome locationscaffold3:34084587..34090659
RNA-Seq ExpressionSpg014206
SyntenySpg014206
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572047.1 Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]6.1e-3793.1Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEEL
        MA+SSLKQQRPEATWTAKQNKLFEKALALYDKETPERW NIA AVGGKSADEVKRHYEILLEDLRRIESG VPIPNYRG  NGDEEL
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEEL

XP_022952671.1 protein RADIALIS-like 3 [Cucurbita moschata]4.6e-3794.25Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEEL
        MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERW NIA AVGGKSADEVKRHYEILLEDL RIESGRVPIPNYRG  NGDEEL
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEEL

XP_022975322.1 protein RADIALIS-like 3 [Cucurbita maxima]3.6e-3794.25Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEEL
        MASSSLKQQRPEATWTAKQNKLFEKALALYDKE PERW NIA AVGGKSADEVKRHYEILLEDL+RIESGRVPIPNYRGA NGDEEL
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEEL

XP_023554816.1 protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo]2.5e-3896.55Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEEL
        MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERW NIA AVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGA NGDEEL
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEEL

XP_038888997.1 protein RADIALIS-like 3 isoform X3 [Benincasa hispida]2.7e-3792.05Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELS
        MASSSLKQQRPE TWTAKQNKLFEKALALYDKETPERW NIA AVGGKS DEVKRHYE+LLEDLRRIESGRVPIPNYRG GN DEELS
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELS

TrEMBL top hitse value%identityAlignment
A0A1S3BHB0 protein RADIALIS-like 39.4e-3689.66Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEEL
        MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERWQNIA AVGGKSADEV+RHYEILLEDLR+IESGRVPIPNYRG  N DEEL
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEEL

A0A5D3DF44 Protein RADIALIS-like 32.7e-3588.51Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEEL
        MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERWQNIA AVGGKSA+EV+RHYEILLEDLR+IESGRVPIPNYRG  N DEEL
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEEL

A0A6J1C2H2 protein RADIALIS-like 38.5e-3791.21Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR----GAGNGDEEL
        MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIA AVGGKSADEVKRHY+ILLEDLRRIESGRVPIPNYR     AGN DEEL
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR----GAGNGDEEL

A0A6J1GKW1 protein RADIALIS-like 32.2e-3794.25Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEEL
        MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERW NIA AVGGKSADEVKRHYEILLEDL RIESGRVPIPNYRG  NGDEEL
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEEL

A0A6J1ICR6 protein RADIALIS-like 31.7e-3794.25Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEEL
        MASSSLKQQRPEATWTAKQNKLFEKALALYDKE PERW NIA AVGGKSADEVKRHYEILLEDL+RIESGRVPIPNYRGA NGDEEL
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEEL

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 16.1e-2462.96Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAG
        MASSS+  Q    +WTAKQNK FE+ALA YD++TP RWQN+AK VGGK+ +EVKRHYE+L++D+  IE+G VP PNYR +G
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAG

Q1A173 Protein RADIALIS-like 68.8e-2364.1Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR
        MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+AKAVGGK+ +EVKRHY+IL+EDL  IE+GRVP+PNY+
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR

Q58FS3 Transcription factor RADIALIS2.2e-2164.18Show/hide
Query:  WTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAG
        W+AK+NK FE+ALA+YDK+TP+RW N+A+AV G++ +EVK+HYEIL+ED++ IESG+VP PNYR  G
Subjt:  WTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAG

Q6NNN0 Protein RADIALIS-like 31.4e-2362.2Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGN
        MAS+S+      A+WT K+NKLFE+ALA YD++TP+RW N+A+AVGGKSA+EV+RHYE+L+ D+  IESGR P PNYR  GN
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGN

Q8GW75 Protein RADIALIS-like 55.2e-2360Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDE
        MASSS+      ++WT+KQNK+FE+ALA+YDK+TP+RWQN+AKAVG KSA+EVKRHY+IL+EDL  IE   VP+P Y+    G +
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDE

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 53.7e-2460Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDE
        MASSS+      ++WT+KQNK+FE+ALA+YDK+TP+RWQN+AKAVG KSA+EVKRHY+IL+EDL  IE   VP+P Y+    G +
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDE

AT1G75250.1 RAD-like 66.3e-2464.1Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR
        MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+AKAVGGK+ +EVKRHY+IL+EDL  IE+GRVP+PNY+
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR

AT1G75250.2 RAD-like 66.3e-2464.1Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR
        MAS+S     P   WT  QNK+FE+ALA+YDK+TP+RW N+AKAVGGK+ +EVKRHY+IL+EDL  IE+GRVP+PNY+
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR

AT2G18328.1 RAD-like 42.9e-2161.54Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR
        MASSS+      ++WTA+++K FE ALA +DK+TP+RWQ IA+AVGGKS +EVKRHYE+LL D+  IESGR P P YR
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYR

AT4G39250.1 RAD-like 14.3e-2562.96Show/hide
Query:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAG
        MASSS+  Q    +WTAKQNK FE+ALA YD++TP RWQN+AK VGGK+ +EVKRHYE+L++D+  IE+G VP PNYR +G
Subjt:  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCAGCTCTTTGAAGCAGCAGCGGCCGGAGGCGACGTGGACGGCGAAGCAGAACAAGCTGTTCGAGAAGGCATTGGCTTTGTACGACAAAGAGACACCTGAGCG
ATGGCAGAATATCGCCAAGGCCGTCGGCGGGAAGTCGGCCGACGAAGTCAAAAGACACTATGAGATACTCTTGGAAGATCTCCGGCGGATCGAGTCCGGCCGTGTTCCTA
TTCCCAATTACAGAGGCGCCGGCAATGGAGATGAAGAGTTGAGCCACAAGCCTTCAACTCTGCATTCCTTCTCCTTCGTGAGCCTCTTCAGCAAGCGTCCCCTGGTTCTC
GACGGCGCGGCGTGCGTGGGTCCGGCGACGGCAGTTCCGTTCAGTCGGTGGCGACGCGGGTTTTTCGCGCGGCGAAGAGGCTGTTTTGCGTTTTCCGGTGGCGGTGCAGG
GGGGTCGCGTGGCAGCAGTGTTTTGGGTTTGTTTTATCGTTTCCAGCAAGAGTTCAATGTGGAGGCTTACCCATTGATTGTGGCTATCGTTTCCAAGGTTTTTGTGGCAT
TCGGGATCTGTATTTTTCGTGTTGGAGCAGAATTTGAGGGCTTGGACAGCAAGCTTAGTTTCTGTTTAGGATTAAGTAAGTATGTTTGGAATGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCAGCTCTTTGAAGCAGCAGCGGCCGGAGGCGACGTGGACGGCGAAGCAGAACAAGCTGTTCGAGAAGGCATTGGCTTTGTACGACAAAGAGACACCTGAGCG
ATGGCAGAATATCGCCAAGGCCGTCGGCGGGAAGTCGGCCGACGAAGTCAAAAGACACTATGAGATACTCTTGGAAGATCTCCGGCGGATCGAGTCCGGCCGTGTTCCTA
TTCCCAATTACAGAGGCGCCGGCAATGGAGATGAAGAGTTGAGCCACAAGCCTTCAACTCTGCATTCCTTCTCCTTCGTGAGCCTCTTCAGCAAGCGTCCCCTGGTTCTC
GACGGCGCGGCGTGCGTGGGTCCGGCGACGGCAGTTCCGTTCAGTCGGTGGCGACGCGGGTTTTTCGCGCGGCGAAGAGGCTGTTTTGCGTTTTCCGGTGGCGGTGCAGG
GGGGTCGCGTGGCAGCAGTGTTTTGGGTTTGTTTTATCGTTTCCAGCAAGAGTTCAATGTGGAGGCTTACCCATTGATTGTGGCTATCGTTTCCAAGGTTTTTGTGGCAT
TCGGGATCTGTATTTTTCGTGTTGGAGCAGAATTTGAGGGCTTGGACAGCAAGCTTAGTTTCTGTTTAGGATTAAGTAAGTATGTTTGGAATGTTTGA
Protein sequenceShow/hide protein sequence
MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWQNIAKAVGGKSADEVKRHYEILLEDLRRIESGRVPIPNYRGAGNGDEELSHKPSTLHSFSFVSLFSKRPLVL
DGAACVGPATAVPFSRWRRGFFARRRGCFAFSGGGAGGSRGSSVLGLFYRFQQEFNVEAYPLIVAIVSKVFVAFGICIFRVGAEFEGLDSKLSFCLGLSKYVWNV