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Spg014289 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg014289
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold3:33322759..33327744
RNA-Seq ExpressionSpg014289
SyntenySpg014289
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]1.5e-0443.16Show/hide
Query:  LHVPRGNRSSLQARELAKT-----------------VEIELPVPDNCHSLLKASRSSSSSTVQQGQQVSLEEDDVRWLHAISRTKLAGSSEGGVT
        L +PRGNR SLQ  EL KT                 VEIELPV D   +L  ++ SS S++   G    + EDDV WLH + R K AG   GGVT
Subjt:  LHVPRGNRSSLQARELAKT-----------------VEIELPVPDNCHSLLKASRSSSSSTVQQGQQVSLEEDDVRWLHAISRTKLAGSSEGGVT

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.5e-0435.64Show/hide
Query:  VPRGNRSSLQARELAKTVEIELPVPDNCHSLLKASRSSSSSTVQ--------------------------QGQQVSLEEDDVRWLHAISRTKLAGSSEGG
        +PRGNR +L   +L KTVEIELPVPD   +  ++S+S+SS+ ++                          +G    +  DD+ WLHA+   K AGS  GG
Subjt:  VPRGNRSSLQARELAKTVEIELPVPDNCHSLLKASRSSSSSTVQ--------------------------QGQQVSLEEDDVRWLHAISRTKLAGSSEGG

Query:  V
        V
Subjt:  V

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]2.3e-0542.16Show/hide
Query:  NNSKSVLHVPRGNRSSLQARELAKT-----------------VEIELPVPDNCHSLLKASRSSSSST-VQQGQQVSLEEDDVRWLHAISRTKLAGSSEGG
        +N K  L  PRGNR SLQ  +L KT                 VEIELPVPD   +  ++  S+S ST + +G       DDV WLHA+ R K AG   GG
Subjt:  NNSKSVLHVPRGNRSSLQARELAKT-----------------VEIELPVPDNCHSLLKASRSSSSST-VQQGQQVSLEEDDVRWLHAISRTKLAGSSEGG

Query:  VT
        VT
Subjt:  VT

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]4.4e-0433.6Show/hide
Query:  LHVPRGNRSSLQARELAKT-----------------VEIELPVPDNCHSLLKASRSSSSSTVQ--------------------------QGQQVSLEEDD
        L +PRGNRSSLQ  EL KT                 VEIELPVPD   +  ++  S+SS+ ++                          +G    +  DD
Subjt:  LHVPRGNRSSLQARELAKT-----------------VEIELPVPDNCHSLLKASRSSSSSTVQ--------------------------QGQQVSLEEDD

Query:  VRWLHAISRTKLAGSSEGGVTVCIE
        V WLH + R K+AG   GGVT  I+
Subjt:  VRWLHAISRTKLAGSSEGGVTVCIE

TYK11725.1 uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa]5.2e-0543.75Show/hide
Query:  LHVPRGNRSSLQARELAKT-----------------VEIELPVPDNCHSLL-KASRSSSSSTV-QQGQQVSLEEDDVRWLHAISRTKLAGSSEGGV
        L +PRGNR SLQ  EL KT                 VEIELPVPD   +L  K S   ++S V  +G    +  DDV WLHA+ R K+AG   GGV
Subjt:  LHVPRGNRSSLQARELAKT-----------------VEIELPVPDNCHSLL-KASRSSSSSTV-QQGQQVSLEEDDVRWLHAISRTKLAGSSEGGV

TrEMBL top hitse value%identityAlignment
A0A5A7UAH6 CCHC-type domain-containing protein7.3e-0535.64Show/hide
Query:  VPRGNRSSLQARELAKTVEIELPVPDNCHSLLKASRSSSSSTVQ--------------------------QGQQVSLEEDDVRWLHAISRTKLAGSSEGG
        +PRGNR +L   +L KTVEIELPVPD   +  ++S+S+SS+ ++                          +G    +  DD+ WLHA+   K AGS  GG
Subjt:  VPRGNRSSLQARELAKTVEIELPVPDNCHSLLKASRSSSSSTVQ--------------------------QGQQVSLEEDDVRWLHAISRTKLAGSSEGG

Query:  V
        V
Subjt:  V

A0A5A7VIY9 Uncharacterized protein2.1e-0433.6Show/hide
Query:  LHVPRGNRSSLQARELAKT-----------------VEIELPVPDNCHSLLKASRSSSSSTVQ--------------------------QGQQVSLEEDD
        L +PRGNRSSLQ  EL KT                 VEIELPVPD   +  ++  S+SS+ ++                          +G    +  DD
Subjt:  LHVPRGNRSSLQARELAKT-----------------VEIELPVPDNCHSLLKASRSSSSSTVQ--------------------------QGQQVSLEEDD

Query:  VRWLHAISRTKLAGSSEGGVTVCIE
        V WLH + R K+AG   GGVT  I+
Subjt:  VRWLHAISRTKLAGSSEGGVTVCIE

A0A5D3BAD1 Retrotrans_gag domain-containing protein1.1e-0542.16Show/hide
Query:  NNSKSVLHVPRGNRSSLQARELAKT-----------------VEIELPVPDNCHSLLKASRSSSSST-VQQGQQVSLEEDDVRWLHAISRTKLAGSSEGG
        +N K  L  PRGNR SLQ  +L KT                 VEIELPVPD   +  ++  S+S ST + +G       DDV WLHA+ R K AG   GG
Subjt:  NNSKSVLHVPRGNRSSLQARELAKT-----------------VEIELPVPDNCHSLLKASRSSSSST-VQQGQQVSLEEDDVRWLHAISRTKLAGSSEGG

Query:  VT
        VT
Subjt:  VT

A0A5D3BSA6 Retrotrans_gag domain-containing protein7.3e-0543.16Show/hide
Query:  LHVPRGNRSSLQARELAKT-----------------VEIELPVPDNCHSLLKASRSSSSSTVQQGQQVSLEEDDVRWLHAISRTKLAGSSEGGVT
        L +PRGNR SLQ  EL KT                 VEIELPV D   +L  ++ SS S++   G    + EDDV WLH + R K AG   GGVT
Subjt:  LHVPRGNRSSLQARELAKT-----------------VEIELPVPDNCHSLLKASRSSSSSTVQQGQQVSLEEDDVRWLHAISRTKLAGSSEGGVT

A0A5D3CJL4 Retrotrans_gag domain-containing protein2.5e-0543.75Show/hide
Query:  LHVPRGNRSSLQARELAKT-----------------VEIELPVPDNCHSLL-KASRSSSSSTV-QQGQQVSLEEDDVRWLHAISRTKLAGSSEGGV
        L +PRGNR SLQ  EL KT                 VEIELPVPD   +L  K S   ++S V  +G    +  DDV WLHA+ R K+AG   GGV
Subjt:  LHVPRGNRSSLQARELAKT-----------------VEIELPVPDNCHSLL-KASRSSSSSTV-QQGQQVSLEEDDVRWLHAISRTKLAGSSEGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCAGCTGGTGTTACGAACACTCGTGAAGGACTAACTAGTCGATATTGGTCTATATCCATGGACACAGAAAATATGTCTGCAGTGAGAAGAGTGCAACCAAGAATTTTCCA
GCAAAGAAACTACAAGGAGGCTGCTGCGTTTTCGTTCGTTGAAGCGTCGTTGGCGAAGAACGGTCAAGTCTACAACGAAGGCGTGAAGGAGAACCACAACTGCACTCTTC
TCACTGCAGATATATTTCTGTGTCCACGGATATTGACCAATAACAGCAAGTCAGTCCTTCACGTGCCAAGAGGAAATAGGTCGAGTCTACAGGCCAGGGAACTAGCCAAG
ACTGTAGAGATCGAGCTCCCGGTGCCTGATAATTGCCATAGTCTGCTAAAAGCTTCCAGATCAAGCTCCAGTTCAACGGTTCAACAGGGTCAACAGGTATCGTTAGAAGA
GGACGATGTCCGTTGGCTTCACGCCATCTCCCGGACTAAGCTAGCAGGTAGTTCGGAAGGGGGTGTGACAGTTTGTATCGAAATACAAAGCGGGTCGTATCCATAG
mRNA sequenceShow/hide mRNA sequence
CCAGCTGGTGTTACGAACACTCGTGAAGGACTAACTAGTCGATATTGGTCTATATCCATGGACACAGAAAATATGTCTGCAGTGAGAAGAGTGCAACCAAGAATTTTCCA
GCAAAGAAACTACAAGGAGGCTGCTGCGTTTTCGTTCGTTGAAGCGTCGTTGGCGAAGAACGGTCAAGTCTACAACGAAGGCGTGAAGGAGAACCACAACTGCACTCTTC
TCACTGCAGATATATTTCTGTGTCCACGGATATTGACCAATAACAGCAAGTCAGTCCTTCACGTGCCAAGAGGAAATAGGTCGAGTCTACAGGCCAGGGAACTAGCCAAG
ACTGTAGAGATCGAGCTCCCGGTGCCTGATAATTGCCATAGTCTGCTAAAAGCTTCCAGATCAAGCTCCAGTTCAACGGTTCAACAGGGTCAACAGGTATCGTTAGAAGA
GGACGATGTCCGTTGGCTTCACGCCATCTCCCGGACTAAGCTAGCAGGTAGTTCGGAAGGGGGTGTGACAGTTTGTATCGAAATACAAAGCGGGTCGTATCCATAG
Protein sequenceShow/hide protein sequence
PAGVTNTREGLTSRYWSISMDTENMSAVRRVQPRIFQQRNYKEAAAFSFVEASLAKNGQVYNEGVKENHNCTLLTADIFLCPRILTNNSKSVLHVPRGNRSSLQARELAK
TVEIELPVPDNCHSLLKASRSSSSSTVQQGQQVSLEEDDVRWLHAISRTKLAGSSEGGVTVCIEIQSGSYP