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Spg014337 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg014337
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionMMS19 nucleotide excision repair protein
Genome locationscaffold3:48465291..48466762
RNA-Seq ExpressionSpg014337
SyntenySpg014337
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0016226 - iron-sulfur cluster assembly (biological process)
GO:0097428 - protein maturation by iron-sulfur cluster transfer (biological process)
GO:0005634 - nucleus (cellular component)
GO:0097361 - CIA complex (cellular component)
InterPro domainsIPR011989 - Armadillo-like helical
IPR016024 - Armadillo-type fold
IPR039920 - DNA repair/transcription protein MET18/MMS19


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004141784.1 MMS19 nucleotide excision repair protein homolog isoform X1 [Cucumis sativus]9.0e-2192.98Show/hide
Query:  MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS
        MMLVRETAIQCLVA+SELPHARIYPMR+QVLH ISKALDDPKRSVRQEAVRCRQAW+
Subjt:  MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS

XP_011659674.1 MMS19 nucleotide excision repair protein homolog isoform X2 [Cucumis sativus]9.0e-2192.98Show/hide
Query:  MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS
        MMLVRETAIQCLVA+SELPHARIYPMR+QVLH ISKALDDPKRSVRQEAVRCRQAW+
Subjt:  MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS

XP_038898520.1 MMS19 nucleotide excision repair protein homolog isoform X1 [Benincasa hispida]6.9e-2192.98Show/hide
Query:  MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS
        MMLVRETAIQCLVA+SELPHARIYPMR+QVLHAISKALDDPKR+VRQEAVRCRQAW+
Subjt:  MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS

XP_038898521.1 MMS19 nucleotide excision repair protein homolog isoform X2 [Benincasa hispida]6.9e-2192.98Show/hide
Query:  MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS
        MMLVRETAIQCLVA+SELPHARIYPMR+QVLHAISKALDDPKR+VRQEAVRCRQAW+
Subjt:  MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS

XP_038898522.1 MMS19 nucleotide excision repair protein homolog isoform X3 [Benincasa hispida]6.9e-2192.98Show/hide
Query:  MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS
        MMLVRETAIQCLVA+SELPHARIYPMR+QVLHAISKALDDPKR+VRQEAVRCRQAW+
Subjt:  MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS

TrEMBL top hitse value%identityAlignment
A0A0A0K7A1 MMS19 nucleotide excision repair protein4.4e-2192.98Show/hide
Query:  MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS
        MMLVRETAIQCLVA+SELPHARIYPMR+QVLH ISKALDDPKRSVRQEAVRCRQAW+
Subjt:  MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS

A0A1S3CHF7 MMS19 nucleotide excision repair protein9.7e-2191.23Show/hide
Query:  MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS
        MMLVRETAIQCLVA+SELPHARIYPMR+QVLH ISKALDDPKR+VRQEAVRCRQAW+
Subjt:  MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS

A0A6J1JNP3 MMS19 nucleotide excision repair protein7.4e-2192.98Show/hide
Query:  MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS
        MMLVRETAIQCLVA+SELPHARIYPMR QVLHAISKALDDPKR+VRQEAVRCRQAW+
Subjt:  MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS

A0A6J1JWJ7 MMS19 nucleotide excision repair protein7.4e-2192.98Show/hide
Query:  MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS
        MMLVRETAIQCLVA+SELPHARIYPMR QVLHAISKALDDPKR+VRQEAVRCRQAW+
Subjt:  MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS

A0A6J1JY03 MMS19 nucleotide excision repair protein7.4e-2192.98Show/hide
Query:  MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS
        MMLVRETAIQCLVA+SELPHARIYPMR QVLHAISKALDDPKR+VRQEAVRCRQAW+
Subjt:  MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS

SwissProt top hitse value%identityAlignment
E1BP36 MMS19 nucleotide excision repair protein homolog1.3e-0644.83Show/hide
Query:  MLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWSVM
        M VR  A+QC+ A++ LP   + P + QV+ A++K LDD KR VR+EAV  R  W ++
Subjt:  MLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWSVM

Q0V9L1 MMS19 nucleotide excision repair protein homolog2.0e-0744.83Show/hide
Query:  MLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWSVM
        M VR TA++C++A+++LP   + P ++QV+ A++K LDD KR VR+EAV  R  W ++
Subjt:  MLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWSVM

Q0WVF8 MMS19 nucleotide excision repair protein homolog2.5e-1871.93Show/hide
Query:  MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS
        +M+VRET+IQCLVA+ ELPH RIYP R++VL AI K+LDDPKR VR+EA+RCRQAW+
Subjt:  MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS

Q6DCF2 MMS19 nucleotide excision repair protein homolog2.0e-0744.83Show/hide
Query:  MLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWSVM
        M VR TA++C++A+++LP   + P ++QV+ A++K LDD KR VR+EAV  R  W ++
Subjt:  MLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWSVM

Q9D071 MMS19 nucleotide excision repair protein homolog5.9e-0744.83Show/hide
Query:  MLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWSVM
        M VR  A+QC+ A++ LP + + P + QV+ A++K LDD KR VR+EAV  R  W ++
Subjt:  MLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWSVM

Arabidopsis top hitse value%identityAlignment
AT5G48120.1 ARM repeat superfamily protein1.8e-1971.93Show/hide
Query:  MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS
        +M+VRET+IQCLVA+ ELPH RIYP R++VL AI K+LDDPKR VR+EA+RCRQAW+
Subjt:  MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGCTTGTACGGGAAACTGCAATTCAGTGCCTTGTCGCCATGTCTGAGCTGCCCCATGCAAGGATATACCCCATGAGAAAACAGGTACTACATGCGATATCAAAAGC
TCTTGATGATCCAAAGAGATCTGTTCGACAGGAAGCTGTCAGATGTCGACAAGCATGGTCAGTGATGTTGCTTATGATTCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGATGCTTGTACGGGAAACTGCAATTCAGTGCCTTGTCGCCATGTCTGAGCTGCCCCATGCAAGGATATACCCCATGAGAAAACAGGTACTACATGCGATATCAAAAGC
TCTTGATGATCCAAAGAGATCTGTTCGACAGGAAGCTGTCAGATGTCGACAAGCATGGTCAGTGATGTTGCTTATGATTCCATGA
Protein sequenceShow/hide protein sequence
MMLVRETAIQCLVAMSELPHARIYPMRKQVLHAISKALDDPKRSVRQEAVRCRQAWSVMLLMIP