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Spg014346 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg014346
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease T(2)
Genome locationscaffold3:38598658..38600348
RNA-Seq ExpressionSpg014346
SyntenySpg014346
Gene Ontology termsGO:0006401 - RNA catabolic process (biological process)
GO:0006777 - Mo-molybdopterin cofactor biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0019008 - molybdopterin synthase complex (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0005525 - GTP binding (molecular function)
GO:0033897 - ribonuclease T2 activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
GO:0061798 - GTP 3',8'-cyclase activity (molecular function)
InterPro domainsIPR001568 - Ribonuclease T2-like
IPR036430 - Ribonuclease T2-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593061.1 Ribonuclease 2, partial [Cucurbita argyrosperma subsp. sororia]4.9e-5481.06Show/hide
Query:  KHGTCSYPVVRDEYGYFLTTLNVYFKYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELRICFYKDFK----------NAIISS
        KHGTCS PV RDEYGYFLTTLNVYFKYNVTKVLN+AGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELR+CFYKDFK          N I+SS
Subjt:  KHGTCSYPVVRDEYGYFLTTLNVYFKYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELRICFYKDFK----------NAIISS

Query:  KISCPKYVSLPAYEAGGKIFKFTNSSRQHLSA
        KISCPKYVSLP+YE GGKIF+FT+S+ Q+ +A
Subjt:  KISCPKYVSLPAYEAGGKIFKFTNSSRQHLSA

KAG7025471.1 Ribonuclease 2, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-5982.39Show/hide
Query:  FHIIFLLHAEKHGTCSYPVVRDEYGYFLTTLNVYFKYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELRICFYKDFK------
        FHI FLLHAEKHGTCS PV RDEYGYFLTTLNVYFKYNVTKVLN+AGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELR+CFYKDFK      
Subjt:  FHIIFLLHAEKHGTCSYPVVRDEYGYFLTTLNVYFKYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELRICFYKDFK------

Query:  ----NAIISSKISCPKYVSLPAYEAGGKIFKFTNSSRQHLSA
            NAI+SSKISCPKYVSLP+YE GGKIF+FT+S+ Q+ +A
Subjt:  ----NAIISSKISCPKYVSLPAYEAGGKIFKFTNSSRQHLSA

XP_022959851.1 ribonuclease 2-like [Cucurbita moschata]8.9e-5682.71Show/hide
Query:  EKHGTCSYPVVRDEYGYFLTTLNVYFKYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELRICFYKDFK----------NAIIS
        EKHGTCS PV RDEYGYFLTTLNVYFKYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELR+CFYKDFK          NAI+S
Subjt:  EKHGTCSYPVVRDEYGYFLTTLNVYFKYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELRICFYKDFK----------NAIIS

Query:  SKISCPKYVSLPAYEAGGKIFKFTNSSRQHLSA
        SKISCPKYVSLP+YE GGKIF+FT+S+ Q+ +A
Subjt:  SKISCPKYVSLPAYEAGGKIFKFTNSSRQHLSA

XP_023004819.1 ribonuclease 2-like [Cucurbita maxima]3.4e-5581.95Show/hide
Query:  EKHGTCSYPVVRDEYGYFLTTLNVYFKYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELRICFYKDFK----------NAIIS
        EKHGTCS PV  DEYGYFLTTLNVYFKYNVTKVLN+AGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELR+CFYKDFK          NAI+S
Subjt:  EKHGTCSYPVVRDEYGYFLTTLNVYFKYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELRICFYKDFK----------NAIIS

Query:  SKISCPKYVSLPAYEAGGKIFKFTNSSRQHLSA
        SKISCPKYVSLP+YE GGKIFKFT+S+ Q+ +A
Subjt:  SKISCPKYVSLPAYEAGGKIFKFTNSSRQHLSA

XP_023513829.1 ribonuclease 2-like [Cucurbita pepo subsp. pepo]5.8e-5581.2Show/hide
Query:  EKHGTCSYPVVRDEYGYFLTTLNVYFKYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELRICFYKDFK----------NAIIS
        EKHGTCS PV RDEYGYFLTTLNVYFKYNVTKVLNDAGYVPSN+EKYPLGGIISAVENAFHATPLLVCSKGAVEELR+CFYKDFK          N+I+S
Subjt:  EKHGTCSYPVVRDEYGYFLTTLNVYFKYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELRICFYKDFK----------NAIIS

Query:  SKISCPKYVSLPAYEAGGKIFKFTNSSRQHLSA
        SKISCPKYVSLP+YE GGKIF+FT+S+ Q+ +A
Subjt:  SKISCPKYVSLPAYEAGGKIFKFTNSSRQHLSA

TrEMBL top hitse value%identityAlignment
A0A0A0K5E4 Ribonuclease T(2)1.2e-5075.19Show/hide
Query:  EKHGTCSYPVVRDEYGYFLTTLNVYFKYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELRICFYKDFK----------NAIIS
        EKHGTCSYPV  DEY YFLTTLNVYFKYNVTKVLNDAGY+PSNTEKYPLGGIISA++NAFHATP   C KGAVEEL +CFYKDFK          N IIS
Subjt:  EKHGTCSYPVVRDEYGYFLTTLNVYFKYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELRICFYKDFK----------NAIIS

Query:  SKISCPKYVSLPAYEAGGKIFKFTNSSRQHLSA
        S+ SCPKYVSLPAYE   +IF+F +SSRQ+LSA
Subjt:  SKISCPKYVSLPAYEAGGKIFKFTNSSRQHLSA

A0A6J1GMH3 Ribonuclease T(2)9.3e-5174.63Show/hide
Query:  EKHGTCSYPVVRDEYGYFLTTLNVYFKYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELRICFYKDFK----------NAIIS
        EKHGTCSYPV+RDEY YFLTTLNV+FKYNVTKVLNDAGY+PSNTEKYPLGGI+SAVENAFH TP L CS+GA++ELR+CFYKD K          N IIS
Subjt:  EKHGTCSYPVVRDEYGYFLTTLNVYFKYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELRICFYKDFK----------NAIIS

Query:  SKISCPKYVSLPAYE-AGGKIFKFTNSSRQHLSA
        S  SCP+YVSLPAYE +G  IFKF +SSRQ+LSA
Subjt:  SKISCPKYVSLPAYE-AGGKIFKFTNSSRQHLSA

A0A6J1H611 Ribonuclease T(2)4.3e-5682.71Show/hide
Query:  EKHGTCSYPVVRDEYGYFLTTLNVYFKYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELRICFYKDFK----------NAIIS
        EKHGTCS PV RDEYGYFLTTLNVYFKYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELR+CFYKDFK          NAI+S
Subjt:  EKHGTCSYPVVRDEYGYFLTTLNVYFKYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELRICFYKDFK----------NAIIS

Query:  SKISCPKYVSLPAYEAGGKIFKFTNSSRQHLSA
        SKISCPKYVSLP+YE GGKIF+FT+S+ Q+ +A
Subjt:  SKISCPKYVSLPAYEAGGKIFKFTNSSRQHLSA

A0A6J1JVW6 Ribonuclease T(2)7.9e-5072.93Show/hide
Query:  EKHGTCSYPVVRDEYGYFLTTLNVYFKYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELRICFYKDFK----------NAIIS
        EKHGTCSYPV+RDEY YFLTTLNV+FKYNVTKVLNDAGY+PSNTEKYPLGGI+SAVENAFH TP L CS+GA++ELR+CFYKD K          N IIS
Subjt:  EKHGTCSYPVVRDEYGYFLTTLNVYFKYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELRICFYKDFK----------NAIIS

Query:  SKISCPKYVSLPAYEAGGKIFKFTNSSRQHLSA
        S  SCP+YVSLPA +  G IFKF +SSRQ+ SA
Subjt:  SKISCPKYVSLPAYEAGGKIFKFTNSSRQHLSA

A0A6J1KXE3 Ribonuclease T(2)1.6e-5581.95Show/hide
Query:  EKHGTCSYPVVRDEYGYFLTTLNVYFKYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELRICFYKDFK----------NAIIS
        EKHGTCS PV  DEYGYFLTTLNVYFKYNVTKVLN+AGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELR+CFYKDFK          NAI+S
Subjt:  EKHGTCSYPVVRDEYGYFLTTLNVYFKYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELRICFYKDFK----------NAIIS

Query:  SKISCPKYVSLPAYEAGGKIFKFTNSSRQHLSA
        SKISCPKYVSLP+YE GGKIFKFT+S+ Q+ +A
Subjt:  SKISCPKYVSLPAYEAGGKIFKFTNSSRQHLSA

SwissProt top hitse value%identityAlignment
O80323 Ribonuclease S-32.8e-0437.97Show/hide
Query:  KHGTCSYPVVRDEYGYFLTTLNVYF--KYNVTKVLNDAGYVPSNTEKYPLGGIISAVEN-AFHATPLLVC-SKGAVEEL
        KHG+C YP + +E  YF T + +Y   K NV+++L+ A   P   +K  L  I +A+ N A +  P L C  KG   EL
Subjt:  KHGTCSYPVVRDEYGYFLTTLNVYF--KYNVTKVLNDAGYVPSNTEKYPLGGIISAVEN-AFHATPLLVC-SKGAVEEL

O80325 Ribonuclease S-72.2e-0433.78Show/hide
Query:  KHGTCSYPVVRDEYGYFLTTLNVYF--KYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAF-HATPLLVCSKGA
        KHG+C YP + ++  YF T +N+Y   K NV+++L+ A   P   ++ PL  I +A+ N+  +  P   C K +
Subjt:  KHGTCSYPVVRDEYGYFLTTLNVYF--KYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAF-HATPLLVCSKGA

P42814 Ribonuclease 22.5e-3764.55Show/hide
Query:  EKHGTCSYPVVRDEYGYFLTTLNVYFKYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELRICFYKDFK------NAIISSKIS
        EKHGTCS PV  DEY YFLTTLN+Y K+NVT VL  AGYV SN+EKYPLGGI++A++NAFH TP +VC + A++E+RICFYKDFK      +  ++S+ S
Subjt:  EKHGTCSYPVVRDEYGYFLTTLNVYFKYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELRICFYKDFK------NAIISSKIS

Query:  CPKYVSLPAY
        CPKYVSLP Y
Subjt:  CPKYVSLPAY

P93460 Ribonuclease S-59.7e-0539.24Show/hide
Query:  KHGTCSYPVVRDEYGYFLTTLNVYF--KYNVTKVLNDAGYVPSNTEKYPLGGIISAVEN-AFHATPLLVC-SKGAVEEL
        KHGTC YP + +E  YF T + +Y   K NV+++L+ A   P   +K  L  I +A+ N A +  P L C  KG   EL
Subjt:  KHGTCSYPVVRDEYGYFLTTLNVYF--KYNVTKVLNDAGYVPSNTEKYPLGGIISAVEN-AFHATPLLVC-SKGAVEEL

Q7M456 Ribonuclease Oy7.9e-0730.28Show/hide
Query:  KHGTC--SYPVVRDEYGYFLTTLNVYFKYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVC-------SKGAVEELRICFYKDFK----NAI
        KHGTC  S P   +E  YF   L ++ KYN++++L + G +PS T  Y +    +AV+       ++ C        K  + E+ IC  K+F+    N  
Subjt:  KHGTC--SYPVVRDEYGYFLTTLNVYFKYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVC-------SKGAVEELRICFYKDFK----NAI

Query:  ISSKISCPK
          S+ +CP+
Subjt:  ISSKISCPK

Arabidopsis top hitse value%identityAlignment
AT2G39780.1 ribonuclease 21.8e-3864.55Show/hide
Query:  EKHGTCSYPVVRDEYGYFLTTLNVYFKYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELRICFYKDFK------NAIISSKIS
        EKHGTCS PV  DEY YFLTTLN+Y K+NVT VL  AGYV SN+EKYPLGGI++A++NAFH TP +VC + A++E+RICFYKDFK      +  ++S+ S
Subjt:  EKHGTCSYPVVRDEYGYFLTTLNVYFKYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELRICFYKDFK------NAIISSKIS

Query:  CPKYVSLPAY
        CPKYVSLP Y
Subjt:  CPKYVSLPAY

AT2G39780.2 ribonuclease 21.1e-2260.26Show/hide
Query:  VLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELRICFYKDFK------NAIISSKISCPKYVSLPAY
        VL  AGYV SN+EKYPLGGI++A++NAFH TP +VC + A++E+RICFYKDFK      +  ++S+ SCPKYVSLP Y
Subjt:  VLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELRICFYKDFK------NAIISSKISCPKYVSLPAY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGAAGCAAGCATATTTCATGTTCTTCAAATGCTTCGGTTTTTTCATATCATATTTTTATTACATGCAGAGAAGCATGGAACTTGTTCTTATCCAGTAGTTCGTGA
TGAATATGGTTACTTTTTAACTACTCTCAACGTCTATTTCAAATACAATGTCACAAAAGTCCTGAATGATGCTGGATATGTACCTTCAAATACTGAGAAATATCCTCTGG
GAGGAATCATTTCAGCAGTTGAGAATGCTTTTCATGCCACCCCTCTGTTAGTCTGTTCAAAGGGTGCAGTGGAGGAACTTCGCATATGTTTCTACAAGGATTTCAAGAAT
GCGATTATTTCTTCAAAGATTTCGTGTCCCAAATACGTCAGCTTACCAGCATATGAGGCAGGAGGCAAGATTTTCAAGTTCACCAATTCAAGTAGGCAACATCTAAGTGC
TTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGGAAGCAAGCATATTTCATGTTCTTCAAATGCTTCGGTTTTTTCATATCATATTTTTATTACATGCAGAGAAGCATGGAACTTGTTCTTATCCAGTAGTTCGTGA
TGAATATGGTTACTTTTTAACTACTCTCAACGTCTATTTCAAATACAATGTCACAAAAGTCCTGAATGATGCTGGATATGTACCTTCAAATACTGAGAAATATCCTCTGG
GAGGAATCATTTCAGCAGTTGAGAATGCTTTTCATGCCACCCCTCTGTTAGTCTGTTCAAAGGGTGCAGTGGAGGAACTTCGCATATGTTTCTACAAGGATTTCAAGAAT
GCGATTATTTCTTCAAAGATTTCGTGTCCCAAATACGTCAGCTTACCAGCATATGAGGCAGGAGGCAAGATTTTCAAGTTCACCAATTCAAGTAGGCAACATCTAAGTGC
TTAA
Protein sequenceShow/hide protein sequence
MLEASIFHVLQMLRFFHIIFLLHAEKHGTCSYPVVRDEYGYFLTTLNVYFKYNVTKVLNDAGYVPSNTEKYPLGGIISAVENAFHATPLLVCSKGAVEELRICFYKDFKN
AIISSKISCPKYVSLPAYEAGGKIFKFTNSSRQHLSA