CuGenDBv2

Gene ID	Spg014353
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ribonuclease T(2)
Genome location	scaffold3:38596950..38598155
RNA-Seq Expression	Spg014353
Synteny	Spg014353
Gene Ontology terms	GO:0006401 - RNA catabolic process (biological process) GO:0006777 - Mo-molybdopterin cofactor biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005576 - extracellular region (cellular component) GO:0019008 - molybdopterin synthase complex (cellular component) GO:0003723 - RNA binding (molecular function) GO:0005525 - GTP binding (molecular function) GO:0033897 - ribonuclease T2 activity (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function) GO:0061798 - GTP 3',8'-cyclase activity (molecular function)
InterPro domains	IPR001568 - Ribonuclease T2-like IPR036430 - Ribonuclease T2-like superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0041985.1 ribonuclease 2-like [Cucumis melo var. makuwa]

1.2e-26

91.38

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Query:  GLWADYNDGTWPACCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE
        GLW DYNDGTWPACC G NFDEKEIRTLL+PLKKYWPSLSCSSPSTCHG+KGSFWAHE
Subjt:  GLWADYNDGTWPACCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE

KAG6593061.1 Ribonuclease 2, partial [Cucurbita argyrosperma subsp. sororia]

1.0e-25

82.81

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Query:  GLWADYNDGTWPACCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHEVTVTST
        GLW DYNDGTWP+CCTG  FDEKEI TLLEP+KKYW SLSCSSP TCHGAKGSFWAHEVT   T
Subjt:  GLWADYNDGTWPACCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHEVTVTST

KGN45175.2 hypothetical protein Csa_016228 [Cucumis sativus]

1.4e-25

79.41

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Query:  FAASRRC-GDGLWADYNDGTWPACCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE
        F ++ RC  +GLW DYNDGTWPACC G  FDEKEI TLL+PLKKYWPSLSCSSPSTCHG+KGSFWAHE
Subjt:  FAASRRC-GDGLWADYNDGTWPACCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE

TYK17921.1 ribonuclease 2-like [Cucumis melo var. makuwa]

1.2e-26

91.38

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Query:  GLWADYNDGTWPACCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE
        GLW DYNDGTWPACC G NFDEKEIRTLL+PLKKYWPSLSCSSPSTCHG+KGSFWAHE
Subjt:  GLWADYNDGTWPACCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE

XP_008447208.1 PREDICTED: ribonuclease 2-like [Cucumis melo]

1.4e-25

89.66

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Query:  GLWADYNDGTWPACCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE
        GLW DYNDGTWPACC G  FDEKEIRTLL+PLKKYWPSLSCSSPSTCHG+KGSFWAHE
Subjt:  GLWADYNDGTWPACCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K5E4 Ribonuclease T(2)

4.3e-25

87.93

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Query:  GLWADYNDGTWPACCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE
        GLW DYNDGTWPACC G  FDEKEI TLL+PLKKYWPSLSCSSPSTCHG+KGSFWAHE
Subjt:  GLWADYNDGTWPACCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE

A0A1S3BHR4 Ribonuclease T(2)

6.6e-26

89.66

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Query:  GLWADYNDGTWPACCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE
        GLW DYNDGTWPACC G  FDEKEIRTLL+PLKKYWPSLSCSSPSTCHG+KGSFWAHE
Subjt:  GLWADYNDGTWPACCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE

A0A5A7TKN5 Ribonuclease T(2)

6.0e-27

91.38

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Query:  GLWADYNDGTWPACCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE
        GLW DYNDGTWPACC G NFDEKEIRTLL+PLKKYWPSLSCSSPSTCHG+KGSFWAHE
Subjt:  GLWADYNDGTWPACCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE

A0A5D3D100 Ribonuclease T(2)

6.0e-27

91.38

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Query:  GLWADYNDGTWPACCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE
        GLW DYNDGTWPACC G NFDEKEIRTLL+PLKKYWPSLSCSSPSTCHG+KGSFWAHE
Subjt:  GLWADYNDGTWPACCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE

A0A6J1KXE3 Ribonuclease T(2)

5.6e-25

86.21

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Query:  GLWADYNDGTWPACCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE
        GLW DYNDGTWP+CCTG  FDEKEI TLLEP+KKYW SLSC SPSTCHGAKGSFWAHE
Subjt:  GLWADYNDGTWPACCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE

SwissProt top hits

e value

%identity

Alignment

P42813 Ribonuclease 1

2.3e-07

44.07

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Query:  GLWADYNDGTWPACCTGTN-FDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE
        GLW +Y DGT+P+ C  +  FD   I  LL  +KK WP+L+C S     G+  +FW HE
Subjt:  GLWADYNDGTWPACCTGTN-FDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE

P42814 Ribonuclease 2

4.3e-22

54.32

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Query:  SRRCRARALIISGKFAASRRCGDGLWADYNDGTWPACCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE
        +R C ++     G  A ++    GLW DYNDG+WP+CC  ++F EKEI TL++ L+KYWPSLSC SPS+C+G KGSFW HE
Subjt:  SRRCRARALIISGKFAASRRCGDGLWADYNDGTWPACCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE

P80022 Extracellular ribonuclease LE

1.1e-06

32.93

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Query:  GLWADYNDGTWPA-CCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE--------VTVTSTRYIWFKIAL
        GLW + NDGT+P+ C   + +D+ +I  L+  +++ WP+L+C S     G+  +FW+HE         +V + ++ +FK AL
Subjt:  GLWADYNDGTWPA-CCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE--------VTVTSTRYIWFKIAL

Arabidopsis top hits

e value

%identity

Alignment

AT1G14210.1 Ribonuclease T2 family protein

2.9e-05

37.29

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Query:  GLWADYNDGTWPACCTGTN-FDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE
        GLW  +N+GTWPA C  TN FD  +I  L+  ++K W      +   C   + + W HE
Subjt:  GLWADYNDGTWPACCTGTN-FDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE

AT1G14220.1 Ribonuclease T2 family protein

1.6e-08

42.31

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Query:  RARALIISGKFAASRRCGDGLWADYNDGTWPA-CCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE
        RA     SGK AA      GLW +YN G+WP+ C   + FD  +I  L+  LKK WP+LSC S         +FW HE
Subjt:  RARALIISGKFAASRRCGDGLWADYNDGTWPA-CCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE

AT2G02990.1 ribonuclease 1

1.6e-08

44.07

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Query:  GLWADYNDGTWPACCTGTN-FDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE
        GLW +Y DGT+P+ C  +  FD   I  LL  +KK WP+L+C S     G+  +FW HE
Subjt:  GLWADYNDGTWPACCTGTN-FDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE

AT2G39780.1 ribonuclease 2

3.0e-23

54.32

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Query:  SRRCRARALIISGKFAASRRCGDGLWADYNDGTWPACCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE
        +R C ++     G  A ++    GLW DYNDG+WP+CC  ++F EKEI TL++ L+KYWPSLSC SPS+C+G KGSFW HE
Subjt:  SRRCRARALIISGKFAASRRCGDGLWADYNDGTWPACCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHE

AT2G39780.2 ribonuclease 2

1.0e-23

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Query:  SRRCRARALIISGKFAASRRCGDGLWADYNDGTWPACCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHEVTVTSTRYI
        +R C ++     G  A ++    GLW DYNDG+WP+CC  ++F EKEI TL++ L+KYWPSLSC SPS+C+G KGSFW HE  +    Y+
Subjt:  SRRCRARALIISGKFAASRRCGDGLWADYNDGTWPACCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHEVTVTSTRYI

Sequences

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CDS sequence

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ATGGCATCGCAAAATATATATACTGTCCATTCTGCGCGACAGCGTCGAGACGCTAAGGACACAGCATCGCGACGCTGTCGCGCGCGTGCCCTAATTATTTCAGGAAAGTT
CGCAGCGTCGAGACGCTGTGGAGATGGCTTATGGGCTGATTATAATGATGGAACATGGCCTGCATGTTGCACTGGAACGAATTTTGATGAGAAGGAGATTCGTACCTTAC
TTGAACCCCTGAAGAAATATTGGCCATCTTTGAGTTGTAGTTCACCGTCAACTTGCCATGGTGCAAAAGGATCATTTTGGGCTCATGAGGTGACCGTCACTAGTACAAGA
TATATTTGGTTCAAAATTGCCCTGATGATACTCAAGTTTTAA

mRNA sequence

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Protein sequence

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MASQNIYTVHSARQRRDAKDTASRRCRARALIISGKFAASRRCGDGLWADYNDGTWPACCTGTNFDEKEIRTLLEPLKKYWPSLSCSSPSTCHGAKGSFWAHEVTVTSTR
YIWFKIALMILKF

Spg014353 (gene) of Sponge gourd (cylindrica) v1 genome