CuGenDBv2

Gene ID	Spg014381
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	CRM domain-containing protein
Genome location	scaffold3:33231932..33234038
RNA-Seq Expression	Spg014381
Synteny	Spg014381
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR040286 - CRM domain-containing protein At3g25440-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6580934.1 putative CRM domain-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

1.9e-52

76.13

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Query:  RQALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLSILDFPSDNLKNSQKHQVDKMEDSHSAALCLASDLTNKGNLDSSDEESSEMGDG
        ++ALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLSILD PSDNLKNSQKHQVD+MEDSHSAALCLASD+ NK N + SD+ES E+G+ 
Subjt:  RQALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLSILDFPSDNLKNSQKHQVDKMEDSHSAALCLASDLTNKGNLDSSDEESSEMGDG

Query:  FADSCLASISESDFESDKIYDFDNGSVEGSFSETGDMSSTTTNTFLSS--VFEAH
        FADSC  S SE++FESD + DF++G +EGSFS+TG+MSSTT NT  +S   FE H
Subjt:  FADSCLASISESDFESDKIYDFDNGSVEGSFSETGDMSSTTTNTFLSS--VFEAH

KAG7017679.1 putative CRM domain-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.9e-52

76.13

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Query:  RQALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLSILDFPSDNLKNSQKHQVDKMEDSHSAALCLASDLTNKGNLDSSDEESSEMGDG
        ++ALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLSILD PSDNLKNSQKHQVD+MEDSHSAALCLASD+ NK N + SD+ES E+G+ 
Subjt:  RQALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLSILDFPSDNLKNSQKHQVDKMEDSHSAALCLASDLTNKGNLDSSDEESSEMGDG

Query:  FADSCLASISESDFESDKIYDFDNGSVEGSFSETGDMSSTTTNTFLSS--VFEAH
        FADSC  S SE++FESD + DF++G +EGSFS+TG+MSSTT NT  +S   FE H
Subjt:  FADSCLASISESDFESDKIYDFDNGSVEGSFSETGDMSSTTTNTFLSS--VFEAH

XP_022935659.1 uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Cucurbita moschata]

5.6e-52

76.13

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Query:  RQALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLSILDFPSDNLKNSQKHQVDKMEDSHSAALCLASDLTNKGNLDSSDEESSEMGDG
        ++ALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLSILD PSDNLKNS KHQVD+MEDSHSAALCLASD+ NK N + SD+ES E+G+ 
Subjt:  RQALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLSILDFPSDNLKNSQKHQVDKMEDSHSAALCLASDLTNKGNLDSSDEESSEMGDG

Query:  FADSCLASISESDFESDKIYDFDNGSVEGSFSETGDMSSTTTNTFLSS--VFEAH
        FADSC  S SES+FESD + DF++G +EGSFS+TG+MSSTT NT  +S   FE H
Subjt:  FADSCLASISESDFESDKIYDFDNGSVEGSFSETGDMSSTTTNTFLSS--VFEAH

XP_023526219.1 CRM-domain containing factor CFM2, chloroplastic [Cucurbita pepo subsp. pepo]

3.3e-52

76.13

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Query:  RQALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLSILDFPSDNLKNSQKHQVDKMEDSHSAALCLASDLTNKGNLDSSDEESSEMGDG
        ++ALEKSKYEQSLE VRRFIAIAEKELELYYRHVALYGDPNDRNPLSILD PSDNLKNSQKHQVD+MEDSHSAALCLASD+ NK N + SD+ES E+G+ 
Subjt:  RQALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLSILDFPSDNLKNSQKHQVDKMEDSHSAALCLASDLTNKGNLDSSDEESSEMGDG

Query:  FADSCLASISESDFESDKIYDFDNGSVEGSFSETGDMSSTTTNTFLSS--VFEAH
        FADSC  S SES+FESD + DF++G +EGSFS+TG+MSSTT NT  +S   FE H
Subjt:  FADSCLASISESDFESDKIYDFDNGSVEGSFSETGDMSSTTTNTFLSS--VFEAH

XP_038903000.1 CRM-domain containing factor CFM9, mitochondrial [Benincasa hispida]

4.6e-46

70.32

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Query:  RQALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLSILDFPSDNLKNSQKHQVDKMEDSHSAALCLASDLTNKGNLDSSDEESSEMGDG
        ++ALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLSILD PS+N   S KHQV+K++DSHSAALCLAS++TN+ N D  D+ES E GDG
Subjt:  RQALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLSILDFPSDNLKNSQKHQVDKMEDSHSAALCLASDLTNKGNLDSSDEESSEMGDG

Query:  FADSCLASISESDFESDKIYDFDNGSVEGSFSETGDMSSTTTNT--FLSSVFEAH
        F DSC  S SESDFESDK+ D D+G +E SFS+TG++SS+T +T     + FE+H
Subjt:  FADSCLASISESDFESDKIYDFDNGSVEGSFSETGDMSSTTTNT--FLSSVFEAH

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LF61 CRM domain-containing protein

2.1e-44

72.22

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Query:  RQALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLSILDFPSDNLKNSQKHQVDKMEDSHSAALCLASDLTNKGNLDSSDEESSEMGDG
        ++ALEKSKYEQSLESVRRFIAIAEKELELYYRH+ALYGDPNDRNPLSIL+ PSDNL NS K+Q+  MEDSHSAALCLASD+ N+ N D SD+ES ++GDG
Subjt:  RQALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLSILDFPSDNLKNSQKHQVDKMEDSHSAALCLASDLTNKGNLDSSDEESSEMGDG

Query:  FADSCLASISESDFESDKIYDFDNGSVEGSFSETGDMSSTTTNT
        FAD+C  S SESDFESDK+ +   G +E S S+T ++SSTT NT
Subjt:  FADSCLASISESDFESDKIYDFDNGSVEGSFSETGDMSSTTTNT

A0A1S3B7C2 CRM-domain containing factor CFM3, chloroplastic/mitochondrial

4.9e-46

72.22

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Query:  RQALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLSILDFPSDNLKNSQKHQVDKMEDSHSAALCLASDLTNKGNLDSSDEESSEMGDG
        ++ALEKSKYEQSLESVRRFIAIAEKELELYYRH+ALYGDPNDRNPLSIL+ PSDNLKNS KHQ+  MEDSHSAALCL SD+ N+ N D SD+ES ++GD 
Subjt:  RQALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLSILDFPSDNLKNSQKHQVDKMEDSHSAALCLASDLTNKGNLDSSDEESSEMGDG

Query:  FADSCLASISESDFESDKIYDFDNGSVEGSFSETGDMSSTTTNT
        F D+C  S SESDFESDK+ + D+G +E S S+T +M STT NT
Subjt:  FADSCLASISESDFESDKIYDFDNGSVEGSFSETGDMSSTTTNT

A0A5A7UFD6 CRM-domain containing factor CFM3

4.9e-46

72.22

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Query:  RQALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLSILDFPSDNLKNSQKHQVDKMEDSHSAALCLASDLTNKGNLDSSDEESSEMGDG
        ++ALEKSKYEQSLESVRRFIAIAEKELELYYRH+ALYGDPNDRNPLSIL+ PSDNLKNS KHQ+  MEDSHSAALCL SD+ N+ N D SD+ES ++GD 
Subjt:  RQALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLSILDFPSDNLKNSQKHQVDKMEDSHSAALCLASDLTNKGNLDSSDEESSEMGDG

Query:  FADSCLASISESDFESDKIYDFDNGSVEGSFSETGDMSSTTTNT
        F D+C  S SESDFESDK+ + D+G +E S S+T +M STT NT
Subjt:  FADSCLASISESDFESDKIYDFDNGSVEGSFSETGDMSSTTTNT

A0A6J1DSE1 uncharacterized CRM domain-containing protein At3g25440, chloroplastic

1.8e-43

78.46

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Query:  RQALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLSILDFPSDNLKNSQKHQVDKMEDSHSAALCLASDLTNKGNLDSSDEESSEMGDG
        ++ALEKSKYEQSLESV+RFIAIAEKELELYYRH+ALYGDPNDRNPLSILD PSDNLK SQKHQV +ME+S S ALCLASDL N+ NLD SD ESS++ D 
Subjt:  RQALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLSILDFPSDNLKNSQKHQVDKMEDSHSAALCLASDLTNKGNLDSSDEESSEMGDG

Query:  FADSCLASISESDFESDKIYDFDNGSVEGS
         ADS L S SESD ESDK+YD DNGS EGS
Subjt:  FADSCLASISESDFESDKIYDFDNGSVEGS

A0A6J1F621 uncharacterized CRM domain-containing protein At3g25440, chloroplastic

2.7e-52

76.13

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Query:  RQALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLSILDFPSDNLKNSQKHQVDKMEDSHSAALCLASDLTNKGNLDSSDEESSEMGDG
        ++ALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLSILD PSDNLKNS KHQVD+MEDSHSAALCLASD+ NK N + SD+ES E+G+ 
Subjt:  RQALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLSILDFPSDNLKNSQKHQVDKMEDSHSAALCLASDLTNKGNLDSSDEESSEMGDG

Query:  FADSCLASISESDFESDKIYDFDNGSVEGSFSETGDMSSTTTNTFLSS--VFEAH
        FADSC  S SES+FESD + DF++G +EGSFS+TG+MSSTT NT  +S   FE H
Subjt:  FADSCLASISESDFESDKIYDFDNGSVEGSFSETGDMSSTTTNTFLSS--VFEAH

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G28480.1 RNA-binding CRS1 / YhbY (CRM) domain protein

5.1e-19

51.3

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Query:  RQALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLSILDFPSDNLKNSQKHQVDKMEDSHSAALCLASDLTNKGNLDSSDEESSEMGDG
        ++A EKSKYEQSLESVR FIAIAEKELELYYRHVALY DPN+RNPLSILD   D+   S++H  ++            SD  +    +  DEE  E+ +G
Subjt:  RQALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLSILDFPSDNLKNSQKHQVDKMEDSHSAALCLASDLTNKGNLDSSDEESSEMGDG

Query:  FADSCLA--SISESD
         + S  A   +SES+
Subjt:  FADSCLA--SISESD

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGATGCATTTAATTTGTGTTCGACTTGGAATGTGGATTGCTATGCTATGATTGAGGAGGTGCTTTTGAATTCACCTGTTCGAGAAAAGGTCAAAGTATTGCGGCAGGC
ACTAGAAAAATCCAAGTATGAGCAATCACTCGAGTCTGTACGCCGATTCATTGCTATTGCTGAAAAGGAACTGGAGCTATATTACAGGCATGTTGCTCTTTATGGTGACC
CAAATGATAGGAATCCATTGTCCATCTTAGACTTTCCATCAGACAACTTGAAGAACTCGCAGAAACATCAAGTGGATAAAATGGAAGACTCTCATTCTGCTGCTCTTTGC
TTAGCTTCTGATCTTACGAACAAGGGAAATCTCGATTCCTCTGATGAGGAATCGTCAGAGATGGGAGATGGGTTTGCAGATTCCTGCTTAGCATCTATAAGTGAATCAGA
TTTTGAAAGTGACAAAATATATGATTTTGACAATGGGAGTGTAGAAGGAAGTTTTTCTGAGACAGGAGATATGTCCTCGACGACGACGAACACTTTTCTATCCAGTGTTT
TCGAGGCGCACGCCTCAGGCGATGGGCAAGGCGATTTTGCCCGGGTGCGCCTCACTGAGTGCCCAGGCGAGCGCCTTCAATCGGGCGCTCGCCTGGGCGCGCCTTTGTGC
TCCTCGGTGCGCCTGTCGCCCGATGGGAGGCGATCGCCTCGTTGA

mRNA sequence

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Protein sequence

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MDAFNLCSTWNVDCYAMIEEVLLNSPVREKVKVLRQALEKSKYEQSLESVRRFIAIAEKELELYYRHVALYGDPNDRNPLSILDFPSDNLKNSQKHQVDKMEDSHSAALC
LASDLTNKGNLDSSDEESSEMGDGFADSCLASISESDFESDKIYDFDNGSVEGSFSETGDMSSTTTNTFLSSVFEAHASGDGQGDFARVRLTECPGERLQSGARLGAPLC
SSVRLSPDGRRSPR

Spg014381 (gene) of Sponge gourd (cylindrica) v1 genome