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Spg014392 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg014392
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold3:33186353..33191201
RNA-Seq ExpressionSpg014392
SyntenySpg014392
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]7.1e-1262.5Show/hide
Query:  QKSITIEVSAPFKYKSSKAVPWSYEYKVTI--NLETPPLSVDNISGT-GVPRSGKCYTPDQLLK
        +K ITI V APF+YKSSKAVPW YE KVT+  ++ +PPL VDNI+G  G+  +G+CYTPD LLK
Subjt:  QKSITIEVSAPFKYKSSKAVPWSYEYKVTI--NLETPPLSVDNISGT-GVPRSGKCYTPDQLLK

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]2.3e-1054.67Show/hide
Query:  YREK--TTTHDQKSITIEVSAPFKYKSSKAVPWSYEYKVTI--NLETPPLSVDNISGT-GVPRSGKCYTPDQLLK
        YREK    +  +K   I V  PF+YKSSKAVPW YE KVT+  ++ +P L VDNI+G  G+ R+G+CYTPD LLK
Subjt:  YREK--TTTHDQKSITIEVSAPFKYKSSKAVPWSYEYKVTI--NLETPPLSVDNISGT-GVPRSGKCYTPDQLLK

XP_022150030.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia]3.2e-1258.67Show/hide
Query:  YREK--TTTHDQKSITIEVSAPFKYKSSKAVPWSYEYKVTI--NLETPPLSVDNISGT-GVPRSGKCYTPDQLLK
        YREK    +  +K ITI V APF+YKSSKAVPW YE KVT+  ++ +P L VDNI+G  G+ R+G+CYTPD LLK
Subjt:  YREK--TTTHDQKSITIEVSAPFKYKSSKAVPWSYEYKVTI--NLETPPLSVDNISGT-GVPRSGKCYTPDQLLK

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]3.9e-1050.63Show/hide
Query:  YREK--TTTHDQKSITIEVSAPFKYKSSKAVPWSYEYKVTI--NLETPPLSVDNIS-GTGVPRSGKCYTPDQLLKFESR
        YREK    ++  + ITI+V APF+Y SSKAVPW YE KVT+    ++  L VDNI+ G G+ R+G+CYTP+ LLK  ++
Subjt:  YREK--TTTHDQKSITIEVSAPFKYKSSKAVPWSYEYKVTI--NLETPPLSVDNIS-GTGVPRSGKCYTPDQLLKFESR

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]2.1e-0353.57Show/hide
Query:  EERVEQEKTKRDIEEIREKVDAIITALEKGKMVANTTPPDTPIENPQTGLPFSPSF
        + + EQEKT++DIEE+REK+DAI+ ALEKGK +A T+ P      PQ    F PSF
Subjt:  EERVEQEKTKRDIEEIREKVDAIITALEKGKMVANTTPPDTPIENPQTGLPFSPSF

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]4.2e-1256Show/hide
Query:  YREKTTTHD--QKSITIEVSAPFKYKSSKAVPWSYEYKVTI--NLETPPLSVDNISGT-GVPRSGKCYTPDQLLK
        Y EK    +  +K ITI V APF+YKSSKAVPW Y+ KVT+  ++ +PPL +DNI+G  G+ R+G+CYTPD LLK
Subjt:  YREKTTTHD--QKSITIEVSAPFKYKSSKAVPWSYEYKVTI--NLETPPLSVDNISGT-GVPRSGKCYTPDQLLK

TrEMBL top hitse value%identityAlignment
A0A6J1CNY7 Ribonuclease H3.5e-1262.5Show/hide
Query:  QKSITIEVSAPFKYKSSKAVPWSYEYKVTI--NLETPPLSVDNISGT-GVPRSGKCYTPDQLLK
        +K ITI V APF+YKSSKAVPW YE KVT+  ++ +PPL VDNI+G  G+  +G+CYTPD LLK
Subjt:  QKSITIEVSAPFKYKSSKAVPWSYEYKVTI--NLETPPLSVDNISGT-GVPRSGKCYTPDQLLK

A0A6J1D099 Ribonuclease H1.1e-1054.67Show/hide
Query:  YREK--TTTHDQKSITIEVSAPFKYKSSKAVPWSYEYKVTI--NLETPPLSVDNISGT-GVPRSGKCYTPDQLLK
        YREK    +  +K   I V  PF+YKSSKAVPW YE KVT+  ++ +P L VDNI+G  G+ R+G+CYTPD LLK
Subjt:  YREK--TTTHDQKSITIEVSAPFKYKSSKAVPWSYEYKVTI--NLETPPLSVDNISGT-GVPRSGKCYTPDQLLK

A0A6J1D7C7 Ribonuclease H1.5e-1258.67Show/hide
Query:  YREK--TTTHDQKSITIEVSAPFKYKSSKAVPWSYEYKVTI--NLETPPLSVDNISGT-GVPRSGKCYTPDQLLK
        YREK    +  +K ITI V APF+YKSSKAVPW YE KVT+  ++ +P L VDNI+G  G+ R+G+CYTPD LLK
Subjt:  YREK--TTTHDQKSITIEVSAPFKYKSSKAVPWSYEYKVTI--NLETPPLSVDNISGT-GVPRSGKCYTPDQLLK

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222311.9e-1050.63Show/hide
Query:  YREK--TTTHDQKSITIEVSAPFKYKSSKAVPWSYEYKVTI--NLETPPLSVDNIS-GTGVPRSGKCYTPDQLLKFESR
        YREK    ++  + ITI+V APF+Y SSKAVPW YE KVT+    ++  L VDNI+ G G+ R+G+CYTP+ LLK  ++
Subjt:  YREK--TTTHDQKSITIEVSAPFKYKSSKAVPWSYEYKVTI--NLETPPLSVDNIS-GTGVPRSGKCYTPDQLLKFESR

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222311.0e-0353.57Show/hide
Query:  EERVEQEKTKRDIEEIREKVDAIITALEKGKMVANTTPPDTPIENPQTGLPFSPSF
        + + EQEKT++DIEE+REK+DAI+ ALEKGK +A T+ P      PQ    F PSF
Subjt:  EERVEQEKTKRDIEEIREKVDAIITALEKGKMVANTTPPDTPIENPQTGLPFSPSF

A0A6J1E2J7 Ribonuclease H2.0e-1256Show/hide
Query:  YREKTTTHD--QKSITIEVSAPFKYKSSKAVPWSYEYKVTI--NLETPPLSVDNISGT-GVPRSGKCYTPDQLLK
        Y EK    +  +K ITI V APF+YKSSKAVPW Y+ KVT+  ++ +PPL +DNI+G  G+ R+G+CYTPD LLK
Subjt:  YREKTTTHD--QKSITIEVSAPFKYKSSKAVPWSYEYKVTI--NLETPPLSVDNISGT-GVPRSGKCYTPDQLLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAAGGGTTGAACAAGAGAAGACTAAGCGGGACATTGAGGAAATCAGGGAAAAGGTTGATGCAATCATTACTGCTTTAGAAAAGGGTAAGATGGTGGCAAATAC
GACTCCACCAGACACTCCGATTGAAAATCCTCAAACTGGCCTACCATTTTCACCCAGTTTTGCTTCACATGATTCGATACTCGGAATACTTTCCGTTTTAATATTACTTG
GGCAACCGTACTCTTGCGGAAAATTGCACAACAATTACCGCGAGAAGACTACTACTCATGATCAAAAGTCGATCACCATTGAGGTGTCGGCTCCTTTCAAGTACAAGAGT
TCCAAGGCAGTACCATGGAGTTATGAGTACAAAGTAACTATTAATTTAGAAACGCCACCACTTTCAGTTGACAACATTTCCGGAACAGGTGTACCACGGAGTGGGAAATG
CTACACTCCAGATCAATTATTGAAATTTGAAAGTCGTGAACCAGAATATGGAGACAAAGTCTTTCCTCATCTCTACCACTCATTCGAAAGCGTTGGTATAATTCGTCCAG
GAGATTTTGCAGTTGCAGTAGTGACTAAAGAAGAAGAAGTGGGTCCATGGATCTACCCGTGCCCAGAAAACTTCGAGCTCAACAACTGGAGTACTATTGAATTACTGTCA
TTTGTTGTTAAGATGTCAAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAAAGGGTTGAACAAGAGAAGACTAAGCGGGACATTGAGGAAATCAGGGAAAAGGTTGATGCAATCATTACTGCTTTAGAAAAGGGTAAGATGGTGGCAAATAC
GACTCCACCAGACACTCCGATTGAAAATCCTCAAACTGGCCTACCATTTTCACCCAGTTTTGCTTCACATGATTCGATACTCGGAATACTTTCCGTTTTAATATTACTTG
GGCAACCGTACTCTTGCGGAAAATTGCACAACAATTACCGCGAGAAGACTACTACTCATGATCAAAAGTCGATCACCATTGAGGTGTCGGCTCCTTTCAAGTACAAGAGT
TCCAAGGCAGTACCATGGAGTTATGAGTACAAAGTAACTATTAATTTAGAAACGCCACCACTTTCAGTTGACAACATTTCCGGAACAGGTGTACCACGGAGTGGGAAATG
CTACACTCCAGATCAATTATTGAAATTTGAAAGTCGTGAACCAGAATATGGAGACAAAGTCTTTCCTCATCTCTACCACTCATTCGAAAGCGTTGGTATAATTCGTCCAG
GAGATTTTGCAGTTGCAGTAGTGACTAAAGAAGAAGAAGTGGGTCCATGGATCTACCCGTGCCCAGAAAACTTCGAGCTCAACAACTGGAGTACTATTGAATTACTGTCA
TTTGTTGTTAAGATGTCAAAGTAA
Protein sequenceShow/hide protein sequence
MEERVEQEKTKRDIEEIREKVDAIITALEKGKMVANTTPPDTPIENPQTGLPFSPSFASHDSILGILSVLILLGQPYSCGKLHNNYREKTTTHDQKSITIEVSAPFKYKS
SKAVPWSYEYKVTINLETPPLSVDNISGTGVPRSGKCYTPDQLLKFESREPEYGDKVFPHLYHSFESVGIIRPGDFAVAVVTKEEEVGPWIYPCPENFELNNWSTIELLS
FVVKMSK