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Spg014412 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg014412
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold3:28695703..28699110
RNA-Seq ExpressionSpg014412
SyntenySpg014412
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]1.5e-1436.84Show/hide
Query:  VEQHPFPFFKNEQVPVHNQPGFSPPTEVPPKSIVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL
        V+ +P P  KN Q+      G    ++V    I TPM  LFEIL+ +GY+ +E L  D+    YD++L C YH GA+GH ++QC  F+ KVQELLD   L
Subjt:  VEQHPFPFFKNEQVPVHNQPGFSPPTEVPPKSIVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL

Query:  TVSQKMVQLPQYGEVDIIEECSSKKDMIKAPRQEREKRLARLESREPKYQMN
        TV+Q      Q   +D++E  S+ +    A    + K L  L   +P+   N
Subjt:  TVSQKMVQLPQYGEVDIIEECSSKKDMIKAPRQEREKRLARLESREPKYQMN

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]4.3e-0654.84Show/hide
Query:  EEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSIEGTTPKYRP
        +++ +E EKTRKDIEELREK+DAIL+ALE+GK    IA++SN +++PP  Q   G  P +RP
Subjt:  EEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSIEGTTPKYRP

XP_022155098.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia]2.5e-1437.58Show/hide
Query:  VEQHPFPFFKNEQVPVHNQPGFSPPTEVPPKSIVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL
        V  +P P   N Q+           ++V    I TPM ELFEIL  +GY+ VE L  +L  + YD+SL C +H GAKGH+++QC  FR+ VQELLDS  L
Subjt:  VEQHPFPFFKNEQVPVHNQPGFSPPTEVPPKSIVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL

Query:  TVSQKMVQLPQYGEVDIIEECSSKKDMIKAPRQE--REKRLARLESREP
        TV+       Q   ++++E+ S  +  I     +  + KRL    S +P
Subjt:  TVSQKMVQLPQYGEVDIIEECSSKKDMIKAPRQE--REKRLARLESREP

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]1.5e-1438.78Show/hide
Query:  VEQHPFPFFKNEQVPVHNQPGFSPPTEVPPKSIVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL
        V ++P    +N Q+      G    ++V    I TP  ELFEIL  +GY+ VE L  +L  + YD+SL C +H GAKGHS++QC  FR+KVQELLDS  L
Subjt:  VEQHPFPFFKNEQVPVHNQPGFSPPTEVPPKSIVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL

Query:  TVSQKMVQLPQYGEVDIIEECSSKKDMIKAPRQEREKRLARLESREP
        TV+       Q   ++++E+ S  +    A    + KRL    S +P
Subjt:  TVSQKMVQLPQYGEVDIIEECSSKKDMIKAPRQEREKRLARLESREP

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]1.9e-0944.55Show/hide
Query:  MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMND------------PPIRQSIEGTTPK---YRPLYNIPVEQHPFPFFKN-EQVPV
        ME+Q  E EKTRKDIEELREK+D I + LE+GK   D A SSN +++            PP+R   EG  P+   Y PLY++P+ Q+P  F K  +Q+P 
Subjt:  MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMND------------PPIRQSIEGTTPK---YRPLYNIPVEQHPFPFFKN-EQVPV

Query:  H
        +
Subjt:  H

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]1.5e-1445.26Show/hide
Query:  SKKDMIKAPRQEREKRLARLESREPKYQMNIIPHLLDTFTFAGIIHPESQDPAIM-AIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISK
        S+ D+I+    E+ KRL+R E+ E  Y   I+P L  +F  AG IH E  + +++ A+ E++++ GP VYLCP+ FEL+NW+V+ELPSFVN   K
Subjt:  SKKDMIKAPRQEREKRLARLESREPKYQMNIIPHLLDTFTFAGIIHPESQDPAIM-AIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISK

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]1.3e-1543.44Show/hide
Query:  VEQHPFPFFKNEQVPVHNQPGFSPPTEVPPKSIVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL
        V ++P P  +N Q+           ++V    I TPM ELFEIL  +GY+ VE L  +L  + YD+SL C +H GAKGHS++QC  FR+KVQELLDS  L
Subjt:  VEQHPFPFFKNEQVPVHNQPGFSPPTEVPPKSIVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL

Query:  TVSQKMVQLPQYGEVDIIEECS
        TV+       Q   ++I+E+ S
Subjt:  TVSQKMVQLPQYGEVDIIEECS

TrEMBL top hitse value%identityAlignment
A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222312.1e-0654.84Show/hide
Query:  EEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSIEGTTPKYRP
        +++ +E EKTRKDIEELREK+DAIL+ALE+GK    IA++SN +++PP  Q   G  P +RP
Subjt:  EEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSIEGTTPKYRP

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222311.2e-1437.58Show/hide
Query:  VEQHPFPFFKNEQVPVHNQPGFSPPTEVPPKSIVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL
        V  +P P   N Q+           ++V    I TPM ELFEIL  +GY+ VE L  +L  + YD+SL C +H GAKGH+++QC  FR+ VQELLDS  L
Subjt:  VEQHPFPFFKNEQVPVHNQPGFSPPTEVPPKSIVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL

Query:  TVSQKMVQLPQYGEVDIIEECSSKKDMIKAPRQE--REKRLARLESREP
        TV+       Q   ++++E+ S  +  I     +  + KRL    S +P
Subjt:  TVSQKMVQLPQYGEVDIIEECSSKKDMIKAPRQE--REKRLARLESREP

A0A6J1DR66 uncharacterized protein LOC1110227917.1e-1545.26Show/hide
Query:  SKKDMIKAPRQEREKRLARLESREPKYQMNIIPHLLDTFTFAGIIHPESQDPAIM-AIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISK
        S+ D+I+    E+ KRL+R E+ E  Y   I+P L  +F  AG IH E  + +++ A+ E++++ GP VYLCP+ FEL+NW+V+ELPSFVN   K
Subjt:  SKKDMIKAPRQEREKRLARLESREPKYQMNIIPHLLDTFTFAGIIHPESQDPAIM-AIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISK

A0A6J1DZ90 Ribonuclease H7.1e-1538.78Show/hide
Query:  VEQHPFPFFKNEQVPVHNQPGFSPPTEVPPKSIVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL
        V ++P    +N Q+      G    ++V    I TP  ELFEIL  +GY+ VE L  +L  + YD+SL C +H GAKGHS++QC  FR+KVQELLDS  L
Subjt:  VEQHPFPFFKNEQVPVHNQPGFSPPTEVPPKSIVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL

Query:  TVSQKMVQLPQYGEVDIIEECSSKKDMIKAPRQEREKRLARLESREP
        TV+       Q   ++++E+ S  +    A    + KRL    S +P
Subjt:  TVSQKMVQLPQYGEVDIIEECSSKKDMIKAPRQEREKRLARLESREP

A0A6J1DZ90 Ribonuclease H9.0e-1044.55Show/hide
Query:  MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMND------------PPIRQSIEGTTPK---YRPLYNIPVEQHPFPFFKN-EQVPV
        ME+Q  E EKTRKDIEELREK+D I + LE+GK   D A SSN +++            PP+R   EG  P+   Y PLY++P+ Q+P  F K  +Q+P 
Subjt:  MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMND------------PPIRQSIEGTTPK---YRPLYNIPVEQHPFPFFKN-EQVPV

Query:  H
        +
Subjt:  H

A0A6J1DZ90 Ribonuclease H7.1e-1536.84Show/hide
Query:  VEQHPFPFFKNEQVPVHNQPGFSPPTEVPPKSIVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL
        V+ +P P  KN Q+      G    ++V    I TPM  LFEIL+ +GY+ +E L  D+    YD++L C YH GA+GH ++QC  F+ KVQELLD   L
Subjt:  VEQHPFPFFKNEQVPVHNQPGFSPPTEVPPKSIVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL

Query:  TVSQKMVQLPQYGEVDIIEECSSKKDMIKAPRQEREKRLARLESREPKYQMN
        TV+Q      Q   +D++E  S+ +    A    + K L  L   +P+   N
Subjt:  TVSQKMVQLPQYGEVDIIEECSSKKDMIKAPRQEREKRLARLESREPKYQMN

A0A6J1E2J7 Ribonuclease H6.4e-1643.44Show/hide
Query:  VEQHPFPFFKNEQVPVHNQPGFSPPTEVPPKSIVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL
        V ++P P  +N Q+           ++V    I TPM ELFEIL  +GY+ VE L  +L  + YD+SL C +H GAKGHS++QC  FR+KVQELLDS  L
Subjt:  VEQHPFPFFKNEQVPVHNQPGFSPPTEVPPKSIVTPMGELFEILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFL

Query:  TVSQKMVQLPQYGEVDIIEECS
        TV+       Q   ++I+E+ S
Subjt:  TVSQKMVQLPQYGEVDIIEECS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAGCAAAGTACTGAGATGGAGAAAACAAGGAAAGATATTGAGGAGTTACGAGAAAAAATGGATGCCATTCTTGTCGCCCTGGAAAGAGGCAAAATAATACCTGA
TATTGCTCAGTCCAGCAATACAATGAATGACCCTCCAATCCGGCAATCAATAGAGGGTACTACTCCAAAATATCGTCCATTGTACAATATTCCAGTAGAGCAGCACCCAT
TTCCATTTTTCAAGAATGAGCAAGTGCCTGTACACAATCAACCTGGATTTTCACCACCTACAGAGGTACCTCCTAAGAGCATAGTGACTCCCATGGGAGAACTATTCGAA
ATATTATTCAGTAATGGATACATTGGTGTAGAACGCCTCCAATTAGATTTGGGTGTCAGAGCATACGATGACAGTTTGATGTGTTCTTATCACACTGGGGCAAAAGGGCA
TTCTATCGACCAATGTCCTCATTTTCGTCTGAAGGTCCAGGAGTTGCTAGATTCACATTTTTTAACAGTTTCTCAAAAGATGGTTCAACTCCCTCAGTATGGGGAAGTTG
ATATTATAGAAGAATGCTCAAGCAAAAAAGATATGATTAAAGCACCCAGACAGGAGAGAGAAAAACGACTGGCTAGATTGGAGAGTCGTGAGCCAAAGTATCAAATGAAT
ATCATTCCTCATCTTCTTGATACCTTCACCTTTGCTGGAATAATTCATCCGGAATCTCAAGACCCTGCAATCATGGCTATAATCGAACAGAAGAAAGAAGCGGGTCCCTT
GGTTTATCTGTGCCCAGAAGACTTTGAACTCAATAATTGGACTGTAATGGAGCTGCCATCATTTGTTAATGAGATATCAAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAGCAAAGTACTGAGATGGAGAAAACAAGGAAAGATATTGAGGAGTTACGAGAAAAAATGGATGCCATTCTTGTCGCCCTGGAAAGAGGCAAAATAATACCTGA
TATTGCTCAGTCCAGCAATACAATGAATGACCCTCCAATCCGGCAATCAATAGAGGGTACTACTCCAAAATATCGTCCATTGTACAATATTCCAGTAGAGCAGCACCCAT
TTCCATTTTTCAAGAATGAGCAAGTGCCTGTACACAATCAACCTGGATTTTCACCACCTACAGAGGTACCTCCTAAGAGCATAGTGACTCCCATGGGAGAACTATTCGAA
ATATTATTCAGTAATGGATACATTGGTGTAGAACGCCTCCAATTAGATTTGGGTGTCAGAGCATACGATGACAGTTTGATGTGTTCTTATCACACTGGGGCAAAAGGGCA
TTCTATCGACCAATGTCCTCATTTTCGTCTGAAGGTCCAGGAGTTGCTAGATTCACATTTTTTAACAGTTTCTCAAAAGATGGTTCAACTCCCTCAGTATGGGGAAGTTG
ATATTATAGAAGAATGCTCAAGCAAAAAAGATATGATTAAAGCACCCAGACAGGAGAGAGAAAAACGACTGGCTAGATTGGAGAGTCGTGAGCCAAAGTATCAAATGAAT
ATCATTCCTCATCTTCTTGATACCTTCACCTTTGCTGGAATAATTCATCCGGAATCTCAAGACCCTGCAATCATGGCTATAATCGAACAGAAGAAAGAAGCGGGTCCCTT
GGTTTATCTGTGCCCAGAAGACTTTGAACTCAATAATTGGACTGTAATGGAGCTGCCATCATTTGTTAATGAGATATCAAAGTAA
Protein sequenceShow/hide protein sequence
MEEQSTEMEKTRKDIEELREKMDAILVALERGKIIPDIAQSSNTMNDPPIRQSIEGTTPKYRPLYNIPVEQHPFPFFKNEQVPVHNQPGFSPPTEVPPKSIVTPMGELFE
ILFSNGYIGVERLQLDLGVRAYDDSLMCSYHTGAKGHSIDQCPHFRLKVQELLDSHFLTVSQKMVQLPQYGEVDIIEECSSKKDMIKAPRQEREKRLARLESREPKYQMN
IIPHLLDTFTFAGIIHPESQDPAIMAIIEQKKEAGPLVYLCPEDFELNNWTVMELPSFVNEISK