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Spg014416 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg014416
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPAP_fibrillin domain-containing protein
Genome locationscaffold3:48521293..48526783
RNA-Seq ExpressionSpg014416
SyntenySpg014416
Gene Ontology termsGO:0009579 - thylakoid (cellular component)
GO:0010287 - plastoglobule (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF9600497.1 hypothetical protein IFM89_009946 [Coptis chinensis]1.9e-0682.86Show/hide
Query:  KGILKVLDDKWIQVVFEPHELKVGGLEFPYGGKSE
        KG LKVLDDKWIQV+FEP ELKVG LEF YGG+SE
Subjt:  KGILKVLDDKWIQVVFEPHELKVGGLEFPYGGKSE
KAF9600533.1 hypothetical protein IFM89_009982 [Coptis chinensis]1.9e-0682.86Show/hide
Query:  KGILKVLDDKWIQVVFEPHELKVGGLEFPYGGKSE
        KG LKVLDDKWIQV+FEP ELKVG LEF YGG+SE
Subjt:  KGILKVLDDKWIQVVFEPHELKVGGLEFPYGGKSE
OVA15751.1 Plastid lipid-associated protein/fibrillin conserved domain [Macleaya cordata]3.3e-0680Show/hide
Query:  KGILKVLDDKWIQVVFEPHELKVGGLEFPYGGKSE
        KG LKVLD+KWIQV+FEP ELKVGGL+F YGG+SE
Subjt:  KGILKVLDDKWIQVVFEPHELKVGGLEFPYGGKSE
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.9e-0630.25Show/hide
Query:  ELSTWGVGWIIRDSSGSLVEAGCKQIKRRWTIKTLEILAIKEGLKAYLAQKRNQSVHLIVEADVLKVIRALNYEIADISESKIVMNEVEVLAAEASVISF
        + +T G+GWI+RD  G +++A C+ I+    I  LE++AI EGL+A + Q+  + +HL  E+D L+ I  L+ +  D +E   ++ E+  +  +  ++S 
Subjt:  ELSTWGVGWIIRDSSGSLVEAGCKQIKRRWTIKTLEILAIKEGLKAYLAQKRNQSVHLIVEADVLKVIRALNYEIADISESKIVMNEVEVLAAEASVISF

Query:  IKCPRVGNQIARAAAEEEL
            R  N++A   A   +
Subjt:  IKCPRVGNQIARAAAEEEL
XP_031276424.1 probable plastid-lipid-associated protein 8, chloroplastic [Pistacia vera]3.3e-0682.86Show/hide
Query:  KGILKVLDDKWIQVVFEPHELKVGGLEFPYGGKSE
        KG L VLDDKWIQV+FEP ELKVGGLEF YGG+SE
Subjt:  KGILKVLDDKWIQVVFEPHELKVGGLEFPYGGKSE
TrEMBL top hitse value%identityAlignment
A0A0V0HGS6 Putative plastid-lipid-associated protein 8, chloroplastic-like3.6e-0680Show/hide
Query:  KGILKVLDDKWIQVVFEPHELKVGGLEFPYGGKSE
        KG L VLD+KWIQVVFEP ELKVGGL+F YGG+SE
Subjt:  KGILKVLDDKWIQVVFEPHELKVGGLEFPYGGKSE
A0A200QZ99 Plastid lipid-associated protein/fibrillin conserved domain1.6e-0680Show/hide
Query:  KGILKVLDDKWIQVVFEPHELKVGGLEFPYGGKSE
        KG LKVLD+KWIQV+FEP ELKVGGL+F YGG+SE
Subjt:  KGILKVLDDKWIQVVFEPHELKVGGLEFPYGGKSE
A0A6J1BS60 probable plastid-lipid-associated protein 8, chloroplastic3.6e-0680.56Show/hide
Query:  GILKVLDDKWIQVVFEPHELKVGGLEFPYGGKSENE
        G LK LDDKWIQVVFEP ELKVGG EF YGG+SE E
Subjt:  GILKVLDDKWIQVVFEPHELKVGGLEFPYGGKSENE
A0A6J1CP26 uncharacterized protein LOC1110134129.4e-0730.25Show/hide
Query:  ELSTWGVGWIIRDSSGSLVEAGCKQIKRRWTIKTLEILAIKEGLKAYLAQKRNQSVHLIVEADVLKVIRALNYEIADISESKIVMNEVEVLAAEASVISF
        + +T G+GWI+RD  G +++A C+ I+    I  LE++AI EGL+A + Q+  + +HL  E+D L+ I  L+ +  D +E   ++ E+  +  +  ++S 
Subjt:  ELSTWGVGWIIRDSSGSLVEAGCKQIKRRWTIKTLEILAIKEGLKAYLAQKRNQSVHLIVEADVLKVIRALNYEIADISESKIVMNEVEVLAAEASVISF

Query:  IKCPRVGNQIARAAAEEEL
            R  N++A   A   +
Subjt:  IKCPRVGNQIARAAAEEEL
M1AKG1 Structural molecule3.6e-0680Show/hide
Query:  KGILKVLDDKWIQVVFEPHELKVGGLEFPYGGKSE
        KG L VLD+KWIQVVFEP ELKVGGL+F YGG+SE
Subjt:  KGILKVLDDKWIQVVFEPHELKVGGLEFPYGGKSE
SwissProt top hitse value%identityAlignment
Q941D3 Probable plastid-lipid-associated protein 8, chloroplastic1.0e-0564.71Show/hide
Query:  GILKVLDDKWIQVVFEPHELKVGGLEFPYGGKSE
        G LK LD +W+QV+FEP E+KVG LEF YG +SE
Subjt:  GILKVLDDKWIQVVFEPHELKVGGLEFPYGGKSE
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.3e-0425.21Show/hide
Query:  GVGWIIRDSSGSLVEAGCKQIKRRWTIKTLEILAIKEGLKAYLAQKRNQSVHLIVEADVLKVIRALNYEIADISES-KIVMNEVEVLAAEASVISFIKCP
        G+GWI+R+ SG ++  G + + R   +   E+ A++    A L   R     +I E+D   ++  LN +  D   + +  + +++ L      + F   P
Subjt:  GVGWIIRDSSGSLVEAGCKQIKRRWTIKTLEILAIKEGLKAYLAQKRNQSVHLIVEADVLKVIRALNYEIADISES-KIVMNEVEVLAAEASVISFIKCP

Query:  RVGNQIARAAAEEELGVTN
        R GN++A   A E +  +N
Subjt:  RVGNQIARAAAEEELGVTN
AT5G19940.1 Plastid-lipid associated protein PAP / fibrillin family protein7.1e-0764.71Show/hide
Query:  GILKVLDDKWIQVVFEPHELKVGGLEFPYGGKSE
        G LK LD +W+QV+FEP E+KVG LEF YG +SE
Subjt:  GILKVLDDKWIQVVFEPHELKVGGLEFPYGGKSE
AT5G19940.2 Plastid-lipid associated protein PAP / fibrillin family protein7.1e-0764.71Show/hide
Query:  GILKVLDDKWIQVVFEPHELKVGGLEFPYGGKSE
        G LK LD +W+QV+FEP E+KVG LEF YG +SE
Subjt:  GILKVLDDKWIQVVFEPHELKVGGLEFPYGGKSE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGAGGCCCAGCTGAAACAGCCGATTATGATCATAATTGAACCTTTGATTGTGTGTTCAAGGCTGATATCGCCCCTTTGTTGTTGGTGGTTTGCTCTCTCTTTCAC
CCAAAATAGCTCTAGAATTGGGCCTTTTATCAGTGTCATTATCATGGCTCCTCCAACTGTTGCTATGGTTCCCACCAACTTGGCTTGGCTTCTGATGCTTTTGATTTTTA
CCTTCTCGAGCCTGAAAAAGTATGTGTTGGATTTTAGGAACTTCAATTCATGTTTTAGAGAGGGAGAGATTGGGTTTGGACTGTGTGGTTTGGTGACCAAAAATGGATGT
GCTTATTTACTACCTGAGGATCCAAGCCATTACAAAGGTATATTGAAGGTACTAGATGATAAATGGATTCAAGTTGTCTTCGAGCCACATGAATTGAAAGTTGGTGGTTT
AGAGTTTCCATATGGTGGCAAAAGCGAGAATGAAGAATTATCGACATGGGGCGTGGGCTGGATAATCCGTGATTCTTCGGGATCTTTAGTTGAAGCTGGATGCAAACAAA
TCAAACGACGGTGGACCATTAAAACTCTGGAAATCTTAGCGATCAAGGAGGGTTTGAAGGCATACCTAGCGCAAAAGCGAAATCAGAGTGTCCATTTGATCGTGGAGGCG
GATGTCCTCAAAGTTATCCGTGCGTTGAACTACGAAATCGCCGACATTTCCGAAAGCAAAATCGTGATGAACGAGGTGGAGGTTTTGGCGGCTGAAGCGAGCGTGATCTC
TTTCATCAAATGCCCTAGAGTAGGGAATCAAATTGCACGAGCAGCGGCAGAAGAGGAGTTAGGTGTAACGAACGTTTTGCTGGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGAGGCCCAGCTGAAACAGCCGATTATGATCATAATTGAACCTTTGATTGTGTGTTCAAGGCTGATATCGCCCCTTTGTTGTTGGTGGTTTGCTCTCTCTTTCAC
CCAAAATAGCTCTAGAATTGGGCCTTTTATCAGTGTCATTATCATGGCTCCTCCAACTGTTGCTATGGTTCCCACCAACTTGGCTTGGCTTCTGATGCTTTTGATTTTTA
CCTTCTCGAGCCTGAAAAAGTATGTGTTGGATTTTAGGAACTTCAATTCATGTTTTAGAGAGGGAGAGATTGGGTTTGGACTGTGTGGTTTGGTGACCAAAAATGGATGT
GCTTATTTACTACCTGAGGATCCAAGCCATTACAAAGGTATATTGAAGGTACTAGATGATAAATGGATTCAAGTTGTCTTCGAGCCACATGAATTGAAAGTTGGTGGTTT
AGAGTTTCCATATGGTGGCAAAAGCGAGAATGAAGAATTATCGACATGGGGCGTGGGCTGGATAATCCGTGATTCTTCGGGATCTTTAGTTGAAGCTGGATGCAAACAAA
TCAAACGACGGTGGACCATTAAAACTCTGGAAATCTTAGCGATCAAGGAGGGTTTGAAGGCATACCTAGCGCAAAAGCGAAATCAGAGTGTCCATTTGATCGTGGAGGCG
GATGTCCTCAAAGTTATCCGTGCGTTGAACTACGAAATCGCCGACATTTCCGAAAGCAAAATCGTGATGAACGAGGTGGAGGTTTTGGCGGCTGAAGCGAGCGTGATCTC
TTTCATCAAATGCCCTAGAGTAGGGAATCAAATTGCACGAGCAGCGGCAGAAGAGGAGTTAGGTGTAACGAACGTTTTGCTGGCTTAA
Protein sequenceShow/hide protein sequence
MKEAQLKQPIMIIIEPLIVCSRLISPLCCWWFALSFTQNSSRIGPFISVIIMAPPTVAMVPTNLAWLLMLLIFTFSSLKKYVLDFRNFNSCFREGEIGFGLCGLVTKNGC
AYLLPEDPSHYKGILKVLDDKWIQVVFEPHELKVGGLEFPYGGKSENEELSTWGVGWIIRDSSGSLVEAGCKQIKRRWTIKTLEILAIKEGLKAYLAQKRNQSVHLIVEA
DVLKVIRALNYEIADISESKIVMNEVEVLAAEASVISFIKCPRVGNQIARAAAEEELGVTNVLLA