; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg014420 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg014420
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionF-box protein At3g07870-like
Genome locationscaffold3:41966124..41969910
RNA-Seq ExpressionSpg014420
SyntenySpg014420
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK13067.1 putative F-box protein [Cucumis melo var. makuwa]4.5e-3543.87Show/hide
Query:  KKKRKRRIRNINSELPADTVQKFFAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWIGDVCDCDCVYFNGGLYWIGDVCDCDCAQSICRLDIENEKL
        KKK+ +  R       + T+ + FAFG+  T++ WT VGFLP+  +   GVYFNGGLYW+ +  D                       +I RLDIENE L
Subjt:  KKKRKRRIRNINSELPADTVQKFFAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWIGDVCDCDCVYFNGGLYWIGDVCDCDCAQSICRLDIENEKL

Query:  EQISLPRDDGLADFIGVVNGSLYLTICAPMEYDDNVEEYQVWKMEEDCSWIKAFGLQEPKNLDCPGHDLPLQCTGIFLYNLQPIKACEDGKMLCLFGGFH
        E+IS P+  G   F GV +G+LYLT+           +YQVWKM+++ SWIKAF +  P+NL  P H  P Q  G+    L PIKACEDGK+LCL  G H
Subjt:  EQISLPRDDGLADFIGVVNGSLYLTICAPMEYDDNVEEYQVWKMEEDCSWIKAFGLQEPKNLDCPGHDLPLQCTGIFLYNLQPIKACEDGKMLCLFGGFH

Query:  LLLYDPKTQRVE
        L+LYDPKT+  E
Subjt:  LLLYDPKTQRVE

XP_004134745.1 F-box protein At3g07870 [Cucumis sativus]6.9e-3645.88Show/hide
Query:  TVQKFFAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWIGDVCDCDCVYFNGGLYWIGDVCDCDCAQSICRLDIENEKLEQISLPRDDGLADFIGVV
        T+ + F FG+  TH+ WTPVGFLP+  +   GVYF GGLYW+ +  D                       +I RLD+ENEKLE+IS P+  G   F GV 
Subjt:  TVQKFFAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWIGDVCDCDCVYFNGGLYWIGDVCDCDCAQSICRLDIENEKLEQISLPRDDGLADFIGVV

Query:  NGSLYLTICAPMEYDDNVEEYQVWKMEEDCSWIKAFGLQEPKNLDCPGHDLPLQCTGIFLYNLQPIKACEDGKMLCLFGGFHLLLYDPKTQRVE
        +G+LYLT+           +YQVWKM+++ SWIKAF +  P+NL  P H  P Q  G+    L PIKACEDGK+LCL  G HL+LYDPKT+  E
Subjt:  NGSLYLTICAPMEYDDNVEEYQVWKMEEDCSWIKAFGLQEPKNLDCPGHDLPLQCTGIFLYNLQPIKACEDGKMLCLFGGFHLLLYDPKTQRVE

XP_004135796.1 putative F-box protein At1g46984 [Cucumis sativus]7.1e-3347.09Show/hide
Query:  FAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWIGDVCDCDCVYFNGGLYWIGDVCDCDCAQSICRLDIENEKLEQISLPRDDGLADFIGVVNGSLY
        FAFGTS    +WTPVG +PN    Y GVY NGGLYW+G          NGG+         D  + I RLD+++EK E+IS P D G   +I V NG+LY
Subjt:  FAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWIGDVCDCDCVYFNGGLYWIGDVCDCDCAQSICRLDIENEKLEQISLPRDDGLADFIGVVNGSLY

Query:  LTICAPMEYDDNVEEYQVWKMEEDCSWIKAFGLQEPKNLDCPGHDLPLQCTGIFLYNLQPIKACEDGKMLCLFGGFHLLLYDPKTQRVE
        LT C   ++D     Y  WKMEED SW K F L  P+N+    H L     G   Y LQ IK CEDG +LCL+ G  L+LYDP TQ VE
Subjt:  LTICAPMEYDDNVEEYQVWKMEEDCSWIKAFGLQEPKNLDCPGHDLPLQCTGIFLYNLQPIKACEDGKMLCLFGGFHLLLYDPKTQRVE

XP_008439950.1 PREDICTED: putative F-box protein At3g21120 [Cucumis melo]2.2e-3443.4Show/hide
Query:  KKKRKRRIRNINSELPADTVQKFFAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWIGDVCDCDCVYFNGGLYWIGDVCDCDCAQSICRLDIENEKL
        KKK+ +  R       + T+ + FAFG+   ++ WT VGFLP+  +   GVYFNGGLYW+ +  D                       +I RLDIENE L
Subjt:  KKKRKRRIRNINSELPADTVQKFFAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWIGDVCDCDCVYFNGGLYWIGDVCDCDCAQSICRLDIENEKL

Query:  EQISLPRDDGLADFIGVVNGSLYLTICAPMEYDDNVEEYQVWKMEEDCSWIKAFGLQEPKNLDCPGHDLPLQCTGIFLYNLQPIKACEDGKMLCLFGGFH
        E+IS P+  G   F GV +G+LYLT+           +YQVWKM+++ SWIKAF +  P+NL  P H  P Q  G+    L PIKACEDGK+LCL  G H
Subjt:  EQISLPRDDGLADFIGVVNGSLYLTICAPMEYDDNVEEYQVWKMEEDCSWIKAFGLQEPKNLDCPGHDLPLQCTGIFLYNLQPIKACEDGKMLCLFGGFH

Query:  LLLYDPKTQRVE
        L+LYDPKT+  E
Subjt:  LLLYDPKTQRVE

XP_038883771.1 putative F-box protein At1g60370 [Benincasa hispida]1.9e-3849.74Show/hide
Query:  TVQKFFAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWIGDVCDCDCVYFNGGLYWIGDVCDCDCAQSICRLDIENEKLEQISLPRDDGLADFIGVV
        T  + FAFGT+   R+WTPVG LP+  +   GVYFNGGLYW  D                 ++   D   +I RLDIENEKLE+IS P   G   F GV 
Subjt:  TVQKFFAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWIGDVCDCDCVYFNGGLYWIGDVCDCDCAQSICRLDIENEKLEQISLPRDDGLADFIGVV

Query:  NGSLYLTICAPMEYDDNVEE-YQVWKMEEDCSWIKAFGLQEPKNLDCPGHDLPLQCTGIFLYNLQPIKACEDGKMLCLFGGFHLLLYDPKTQRVE
        +G+LYLT      Y   V+  YQVWKMEE+ SWIKAF L  P+NL  P HD P   +      LQPIK CEDGK+LCL  GF L+LYDPKT+RV+
Subjt:  NGSLYLTICAPMEYDDNVEE-YQVWKMEEDCSWIKAFGLQEPKNLDCPGHDLPLQCTGIFLYNLQPIKACEDGKMLCLFGGFHLLLYDPKTQRVE

TrEMBL top hitse value%identityAlignment
A0A0A0KJY9 F-box domain-containing protein3.3e-3645.88Show/hide
Query:  TVQKFFAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWIGDVCDCDCVYFNGGLYWIGDVCDCDCAQSICRLDIENEKLEQISLPRDDGLADFIGVV
        T+ + F FG+  TH+ WTPVGFLP+  +   GVYF GGLYW+ +  D                       +I RLD+ENEKLE+IS P+  G   F GV 
Subjt:  TVQKFFAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWIGDVCDCDCVYFNGGLYWIGDVCDCDCAQSICRLDIENEKLEQISLPRDDGLADFIGVV

Query:  NGSLYLTICAPMEYDDNVEEYQVWKMEEDCSWIKAFGLQEPKNLDCPGHDLPLQCTGIFLYNLQPIKACEDGKMLCLFGGFHLLLYDPKTQRVE
        +G+LYLT+           +YQVWKM+++ SWIKAF +  P+NL  P H  P Q  G+    L PIKACEDGK+LCL  G HL+LYDPKT+  E
Subjt:  NGSLYLTICAPMEYDDNVEEYQVWKMEEDCSWIKAFGLQEPKNLDCPGHDLPLQCTGIFLYNLQPIKACEDGKMLCLFGGFHLLLYDPKTQRVE

A0A0A0M1M5 F-box domain-containing protein3.5e-3347.09Show/hide
Query:  FAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWIGDVCDCDCVYFNGGLYWIGDVCDCDCAQSICRLDIENEKLEQISLPRDDGLADFIGVVNGSLY
        FAFGTS    +WTPVG +PN    Y GVY NGGLYW+G          NGG+         D  + I RLD+++EK E+IS P D G   +I V NG+LY
Subjt:  FAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWIGDVCDCDCVYFNGGLYWIGDVCDCDCAQSICRLDIENEKLEQISLPRDDGLADFIGVVNGSLY

Query:  LTICAPMEYDDNVEEYQVWKMEEDCSWIKAFGLQEPKNLDCPGHDLPLQCTGIFLYNLQPIKACEDGKMLCLFGGFHLLLYDPKTQRVE
        LT C   ++D     Y  WKMEED SW K F L  P+N+    H L     G   Y LQ IK CEDG +LCL+ G  L+LYDP TQ VE
Subjt:  LTICAPMEYDDNVEEYQVWKMEEDCSWIKAFGLQEPKNLDCPGHDLPLQCTGIFLYNLQPIKACEDGKMLCLFGGFHLLLYDPKTQRVE

A0A1S3B0Q6 putative F-box protein At3g211201.1e-3443.4Show/hide
Query:  KKKRKRRIRNINSELPADTVQKFFAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWIGDVCDCDCVYFNGGLYWIGDVCDCDCAQSICRLDIENEKL
        KKK+ +  R       + T+ + FAFG+   ++ WT VGFLP+  +   GVYFNGGLYW+ +  D                       +I RLDIENE L
Subjt:  KKKRKRRIRNINSELPADTVQKFFAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWIGDVCDCDCVYFNGGLYWIGDVCDCDCAQSICRLDIENEKL

Query:  EQISLPRDDGLADFIGVVNGSLYLTICAPMEYDDNVEEYQVWKMEEDCSWIKAFGLQEPKNLDCPGHDLPLQCTGIFLYNLQPIKACEDGKMLCLFGGFH
        E+IS P+  G   F GV +G+LYLT+           +YQVWKM+++ SWIKAF +  P+NL  P H  P Q  G+    L PIKACEDGK+LCL  G H
Subjt:  EQISLPRDDGLADFIGVVNGSLYLTICAPMEYDDNVEEYQVWKMEEDCSWIKAFGLQEPKNLDCPGHDLPLQCTGIFLYNLQPIKACEDGKMLCLFGGFH

Query:  LLLYDPKTQRVE
        L+LYDPKT+  E
Subjt:  LLLYDPKTQRVE

A0A5D3CIX9 Putative F-box protein1.2e-3043Show/hide
Query:  FAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWIGDVCDCDCVYFNGGLYWIGDVCDCDCAQSICRLDIENEKLEQISLPRDDGLADFIGVVNGSLY
        FAFGTS    +WTP+G +PN    Y GVYFNGGLYW+G          NGGL         D    + RLD+ +EK ++IS+P   G   ++GV NG+LY
Subjt:  FAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWIGDVCDCDCVYFNGGLYWIGDVCDCDCAQSICRLDIENEKLEQISLPRDDGLADFIGVVNGSLY

Query:  LTICAPMEYDDNVEEYQVWKMEEDCSWIKAFGLQEPKNLDCPGH-DLPLQCTGIFLYNLQPIKACEDGKMLCLFGGFHLLLYDPKTQRVEESVEALFLFV
        LT+C   ++D     Y VWKM+ED SW K F L  P+N+    H   P+       Y LQ +K CEDG +LCL  G  L++YDPKTQ++E   +    F 
Subjt:  LTICAPMEYDDNVEEYQVWKMEEDCSWIKAFGLQEPKNLDCPGH-DLPLQCTGIFLYNLQPIKACEDGKMLCLFGGFHLLLYDPKTQRVEESVEALFLFV

Query:  LREGKMW
        ++EG MW
Subjt:  LREGKMW

A0A5D3CM94 Putative F-box protein2.2e-3543.87Show/hide
Query:  KKKRKRRIRNINSELPADTVQKFFAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWIGDVCDCDCVYFNGGLYWIGDVCDCDCAQSICRLDIENEKL
        KKK+ +  R       + T+ + FAFG+  T++ WT VGFLP+  +   GVYFNGGLYW+ +  D                       +I RLDIENE L
Subjt:  KKKRKRRIRNINSELPADTVQKFFAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWIGDVCDCDCVYFNGGLYWIGDVCDCDCAQSICRLDIENEKL

Query:  EQISLPRDDGLADFIGVVNGSLYLTICAPMEYDDNVEEYQVWKMEEDCSWIKAFGLQEPKNLDCPGHDLPLQCTGIFLYNLQPIKACEDGKMLCLFGGFH
        E+IS P+  G   F GV +G+LYLT+           +YQVWKM+++ SWIKAF +  P+NL  P H  P Q  G+    L PIKACEDGK+LCL  G H
Subjt:  EQISLPRDDGLADFIGVVNGSLYLTICAPMEYDDNVEEYQVWKMEEDCSWIKAFGLQEPKNLDCPGHDLPLQCTGIFLYNLQPIKACEDGKMLCLFGGFH

Query:  LLLYDPKTQRVE
        L+LYDPKT+  E
Subjt:  LLLYDPKTQRVE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGAGGGGAGGATGGAGAAGAAGAAGCGGAAAAGAAGGATTAGAAACATAAATTCAGAGCTTCCAGCTGATACTGTTCAGAAATTTTTTGCATTTGGCACGAGTCA
TACTCATCGCCAATGGACACCTGTGGGGTTTTTGCCTAATCGTTCCATTTTTTACCGTGGTGTTTACTTCAATGGAGGCCTCTATTGGATTGGAGATGTTTGTGATTGTG
ATTGTGTTTACTTCAATGGAGGCCTCTATTGGATTGGAGATGTTTGTGATTGTGATTGTGCTCAATCCATTTGCCGTTTGGATATAGAAAATGAGAAATTGGAGCAGATT
TCTCTTCCCCGGGATGACGGCCTTGCTGATTTCATTGGAGTCGTCAATGGCAGCCTCTATCTAACTATTTGCGCCCCGATGGAGTATGACGATAACGTTGAAGAGTACCA
GGTGTGGAAGATGGAAGAAGATTGTTCATGGATTAAAGCATTTGGTCTTCAGGAACCCAAAAATTTAGATTGTCCTGGGCATGATCTTCCTTTGCAATGTACAGGAATTT
TTTTATATAACCTCCAACCCATCAAAGCTTGTGAAGATGGGAAGATGTTGTGTCTTTTTGGTGGATTCCATTTACTTCTGTATGACCCCAAGACTCAGAGGGTGGAGGAA
AGTGTTGAAGCCCTGTTTTTATTTGTCTTGAGGGAGGGGAAGATGTGGACCACTTGTTTCTTCATTGTCATTTTGCGTTTCAATCGTGGGGTTGGTTGGCTGAAAGCCGA
TTGTCTGATTTACAAGATGGTTTTGGTTGGACCAGAAGAAGCATCATCTCGGCTCCGATACTTCCTAAGGCGTCCTACAGTCACGTTCGTTGGGCTGAATCTCAACAAAG
ACGCTCGGCCTATCAACCGAACATTTGATTGCTTCGTGAAGAAAAAGGTTGAATTAAAACGTCTGGCGACACCTAGAAACTTCAGGAGAAGCAATATGACATTTCACCAT
CTTGCGGAAGAACTAGGAATTTCAATCAAGAAGGACAAGAAGATCTGGTTCAATGACTTGGAGAACGTTAGCCTCAAACAGGTGAAATATGCATCCATACATGCGTTTAT
CTCGGCTTCCATTGAGAAGCGTAGGCTTGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGAGGGGAGGATGGAGAAGAAGAAGCGGAAAAGAAGGATTAGAAACATAAATTCAGAGCTTCCAGCTGATACTGTTCAGAAATTTTTTGCATTTGGCACGAGTCA
TACTCATCGCCAATGGACACCTGTGGGGTTTTTGCCTAATCGTTCCATTTTTTACCGTGGTGTTTACTTCAATGGAGGCCTCTATTGGATTGGAGATGTTTGTGATTGTG
ATTGTGTTTACTTCAATGGAGGCCTCTATTGGATTGGAGATGTTTGTGATTGTGATTGTGCTCAATCCATTTGCCGTTTGGATATAGAAAATGAGAAATTGGAGCAGATT
TCTCTTCCCCGGGATGACGGCCTTGCTGATTTCATTGGAGTCGTCAATGGCAGCCTCTATCTAACTATTTGCGCCCCGATGGAGTATGACGATAACGTTGAAGAGTACCA
GGTGTGGAAGATGGAAGAAGATTGTTCATGGATTAAAGCATTTGGTCTTCAGGAACCCAAAAATTTAGATTGTCCTGGGCATGATCTTCCTTTGCAATGTACAGGAATTT
TTTTATATAACCTCCAACCCATCAAAGCTTGTGAAGATGGGAAGATGTTGTGTCTTTTTGGTGGATTCCATTTACTTCTGTATGACCCCAAGACTCAGAGGGTGGAGGAA
AGTGTTGAAGCCCTGTTTTTATTTGTCTTGAGGGAGGGGAAGATGTGGACCACTTGTTTCTTCATTGTCATTTTGCGTTTCAATCGTGGGGTTGGTTGGCTGAAAGCCGA
TTGTCTGATTTACAAGATGGTTTTGGTTGGACCAGAAGAAGCATCATCTCGGCTCCGATACTTCCTAAGGCGTCCTACAGTCACGTTCGTTGGGCTGAATCTCAACAAAG
ACGCTCGGCCTATCAACCGAACATTTGATTGCTTCGTGAAGAAAAAGGTTGAATTAAAACGTCTGGCGACACCTAGAAACTTCAGGAGAAGCAATATGACATTTCACCAT
CTTGCGGAAGAACTAGGAATTTCAATCAAGAAGGACAAGAAGATCTGGTTCAATGACTTGGAGAACGTTAGCCTCAAACAGGTGAAATATGCATCCATACATGCGTTTAT
CTCGGCTTCCATTGAGAAGCGTAGGCTTGGATGA
Protein sequenceShow/hide protein sequence
MVEGRMEKKKRKRRIRNINSELPADTVQKFFAFGTSHTHRQWTPVGFLPNRSIFYRGVYFNGGLYWIGDVCDCDCVYFNGGLYWIGDVCDCDCAQSICRLDIENEKLEQI
SLPRDDGLADFIGVVNGSLYLTICAPMEYDDNVEEYQVWKMEEDCSWIKAFGLQEPKNLDCPGHDLPLQCTGIFLYNLQPIKACEDGKMLCLFGGFHLLLYDPKTQRVEE
SVEALFLFVLREGKMWTTCFFIVILRFNRGVGWLKADCLIYKMVLVGPEEASSRLRYFLRRPTVTFVGLNLNKDARPINRTFDCFVKKKVELKRLATPRNFRRSNMTFHH
LAEELGISIKKDKKIWFNDLENVSLKQVKYASIHAFISASIEKRRLG