CuGenDBv2

Gene ID	Spg014426
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	heterogeneous nuclear ribonucleoprotein Q-like
Genome location	scaffold3:37534552..37535346
RNA-Seq Expression	Spg014426
Synteny	Spg014426
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6605979.1 Heterogeneous nuclear ribonucleoprotein Q, partial [Cucurbita argyrosperma subsp. sororia]

2.2e-14

59.66

Show/hide

Query:  EEEKEVEEIEEIEEEEEEE-EEEEVEE------EDDGNNDNGINTQNE------------------------------IDSSEEDLRSFCESIGEVTEVR
        EEE+EVEEIEE+EEEEEEE EEEEVEE      ED GNNDNGIN QNE                               D+SEEDLRSFC SIGEVTEVR
Subjt:  EEEKEVEEIEEIEEEEEEE-EEEEVEE------EDDGNNDNGINTQNE------------------------------IDSSEEDLRSFCESIGEVTEVR

Query:  IIRSKESNENKGFAFVTIK
        I++SK+SNENKGFAFVT K
Subjt:  IIRSKESNENKGFAFVTIK

XP_008449579.1 PREDICTED: nucleolin [Cucumis melo]

9.7e-15

58.82

Show/hide

Query:  EEEKEVEEIEEIEEEEEEEEEEE------VEE-EDDGNNDNGINTQNEI------------------------------DSSEEDLRSFCESIGEVTEVR
        EEE+EVEEIEE+EEEEEEEEEEE      VEE EDDG N+NGIN QNE                               DSSE+DLR FCESIGEVTEVR
Subjt:  EEEKEVEEIEEIEEEEEEEEEEE------VEE-EDDGNNDNGINTQNEI------------------------------DSSEEDLRSFCESIGEVTEVR

Query:  IIRSKESNENKGFAFVTIK
        ++RSKESNENKGFAFVT +
Subjt:  IIRSKESNENKGFAFVTIK

XP_023533658.1 heterogeneous nuclear ribonucleoprotein Q-like [Cucurbita pepo subsp. pepo]

3.7e-14

59.17

Show/hide

Query:  EEEKEVEEIEEIEEEEEEE--EEEEVEE------EDDGNNDNGINTQNE------------------------------IDSSEEDLRSFCESIGEVTEV
        EEE+EVEEIEE+EEEEEEE  EEEEVEE      ED GNNDNGIN QNE                               D+SEEDLRSFC SIGEVTEV
Subjt:  EEEKEVEEIEEIEEEEEEE--EEEEVEE------EDDGNNDNGINTQNE------------------------------IDSSEEDLRSFCESIGEVTEV

Query:  RIIRSKESNENKGFAFVTIK
        RI++SK+SNENKGFAFVT K
Subjt:  RIIRSKESNENKGFAFVTIK

XP_031744156.1 heterogeneous nuclear ribonucleoprotein Q [Cucumis sativus]

5.7e-15

58.82

Show/hide

Query:  EEEKEVEEIEEIEEEEEEEE------EEEVEE-EDDGNNDNGINTQNEI------------------------------DSSEEDLRSFCESIGEVTEVR
        EEE+EVEEIEE+EEEEEEEE      EE+VEE EDDG NDNGIN+QNE                               DSSE+DLR FCESIGEVTEVR
Subjt:  EEEKEVEEIEEIEEEEEEEE------EEEVEE-EDDGNNDNGINTQNEI------------------------------DSSEEDLRSFCESIGEVTEVR

Query:  IIRSKESNENKGFAFVTIK
        ++RSKESNENKGFAFVT +
Subjt:  IIRSKESNENKGFAFVTIK

XP_038902706.1 heterogeneous nuclear ribonucleoprotein Q [Benincasa hispida]

3.0e-16

62.18

Show/hide

Query:  EEEKEVEEIEEIEEEEEEEEEEE------VEE-EDDGNNDNGINTQNEI------------------------------DSSEEDLRSFCESIGEVTEVR
        EEE+EVEEIEE+EEEEEEEEEEE      VEE EDDG N+NGIN QNEI                              DSSEEDLRSFCESIGEVTEVR
Subjt:  EEEKEVEEIEEIEEEEEEEEEEE------VEE-EDDGNNDNGINTQNEI------------------------------DSSEEDLRSFCESIGEVTEVR

Query:  IIRSKESNENKGFAFVTIK
        I+RSKESNENKGFAFVT +
Subjt:  IIRSKESNENKGFAFVTIK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KI54 Uncharacterized protein

2.8e-15

58.82

Show/hide

Query:  EEEKEVEEIEEIEEEEEEEE------EEEVEE-EDDGNNDNGINTQNEI------------------------------DSSEEDLRSFCESIGEVTEVR
        EEE+EVEEIEE+EEEEEEEE      EE+VEE EDDG NDNGIN+QNE                               DSSE+DLR FCESIGEVTEVR
Subjt:  EEEKEVEEIEEIEEEEEEEE------EEEVEE-EDDGNNDNGINTQNEI------------------------------DSSEEDLRSFCESIGEVTEVR

Query:  IIRSKESNENKGFAFVTIK
        ++RSKESNENKGFAFVT +
Subjt:  IIRSKESNENKGFAFVTIK

A0A1S3BMC2 nucleolin

4.7e-15

58.82

Show/hide

Query:  EEEKEVEEIEEIEEEEEEEEEEE------VEE-EDDGNNDNGINTQNEI------------------------------DSSEEDLRSFCESIGEVTEVR
        EEE+EVEEIEE+EEEEEEEEEEE      VEE EDDG N+NGIN QNE                               DSSE+DLR FCESIGEVTEVR
Subjt:  EEEKEVEEIEEIEEEEEEEEEEE------VEE-EDDGNNDNGINTQNEI------------------------------DSSEEDLRSFCESIGEVTEVR

Query:  IIRSKESNENKGFAFVTIK
        ++RSKESNENKGFAFVT +
Subjt:  IIRSKESNENKGFAFVTIK

A0A6J1DHV9 heterogeneous nuclear ribonucleoprotein Q

2.3e-14

Show/hide

Query:  EEEKEVEEIEEIEEEEEEEEEEEVEE-------------EDDGNNDNGINTQNEI------------------------------DSSEEDLRSFCESIG
        EEE+EVEEIEE+EEEEEEEEEEE EE             ED GNNDNG + QNEI                              DSSEEDLRSFC SIG
Subjt:  EEEKEVEEIEEIEEEEEEEEEEEVEE-------------EDDGNNDNGINTQNEI------------------------------DSSEEDLRSFCESIG

Query:  EVTEVRIIRSKESNENKGFAFVTIK
        EVTEVRI+RSK+SNENKGF+FVT K
Subjt:  EVTEVRIIRSKESNENKGFAFVTIK

A0A6J1FY14 heterogeneous nuclear ribonucleoprotein Q-like

2.3e-14

59.32

Show/hide

Query:  EEEKEVEEIEEIEEEEEEEEEEEVEE------EDDGNNDNGINTQNEI------------------------------DSSEEDLRSFCESIGEVTEVRI
        EEE+EVEEI E+EEEEEEEEEEE EE      EDDGNNDN IN QNEI                              DSSEEDLR FCE IGEVTEVR+
Subjt:  EEEKEVEEIEEIEEEEEEEEEEEVEE------EDDGNNDNGINTQNEI------------------------------DSSEEDLRSFCESIGEVTEVRI

Query:  IRSKESNENKGFAFVTIK
        +RSKESNENKGFAFVT +
Subjt:  IRSKESNENKGFAFVTIK

A0A6J1H0I9 heterogeneous nuclear ribonucleoprotein Q-like

1.8e-14

59.17

Show/hide

Query:  EEEKEVEEIEEIEEEEEEE--EEEEVEE------EDDGNNDNGINTQNE------------------------------IDSSEEDLRSFCESIGEVTEV
        EEE+EVEEIEE+EEEEEEE  EEEEVEE      ED GNNDNGIN QNE                               D+SEEDLRSFC SIGEVTEV
Subjt:  EEEKEVEEIEEIEEEEEEE--EEEEVEE------EDDGNNDNGINTQNE------------------------------IDSSEEDLRSFCESIGEVTEV

Query:  RIIRSKESNENKGFAFVTIK
        RI++SK+SNENKGFAFVT K
Subjt:  RIIRSKESNENKGFAFVTIK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G52660.1 RNA-binding (RRM/RBD/RNP motifs) family protein

1.4e-06

43.52

Show/hide

Query:  EEEKEVEEIEEIE-EEEEEEEEEEVEEEDDGNNDNGINTQNE-------------------------IDSSEEDLRSFCESIGEVTEVRIIRSKESNENK
        EEE E EE+EE E EE EEE EEEVE E++   ++ + T+ E                          D++E DL+ FC SIGEVTEVRI+R K+S + K
Subjt:  EEEKEVEEIEEIE-EEEEEEEEEEVEEEDDGNNDNGINTQNE-------------------------IDSSEEDLRSFCESIGEVTEVRIIRSKESNENK

Query:  GFAFVTIK
        G+AFVT +
Subjt:  GFAFVTIK

AT3G52660.2 RNA-binding (RRM/RBD/RNP motifs) family protein

1.4e-06

43.52

Show/hide

Query:  EEEKEVEEIEEIE-EEEEEEEEEEVEEEDDGNNDNGINTQNE-------------------------IDSSEEDLRSFCESIGEVTEVRIIRSKESNENK
        EEE E EE+EE E EE EEE EEEVE E++   ++ + T+ E                          D++E DL+ FC SIGEVTEVRI+R K+S + K
Subjt:  EEEKEVEEIEEIE-EEEEEEEEEEVEEEDDGNNDNGINTQNE-------------------------IDSSEEDLRSFCESIGEVTEVRIIRSKESNENK

Query:  GFAFVTIK
        G+AFVT +
Subjt:  GFAFVTIK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCCATCTGGTTTAAGTCGCCATCGCCACCGCCGCTGGAGCTTGCTGTCGGAAGAGGAGAAGGAGGTGGAAGAAATAGAAGAAATTGAAGAGGAGGAAGAAGAGGAGGA
GGAAGAGGAGGTTGAGGAAGAAGATGATGGAAATAATGACAATGGAATTAATACCCAAAATGAGATTGATTCTTCTGAAGAGGATTTGAGGAGTTTTTGTGAATCCATAG
GAGAAGTTACAGAGGTTCGTATTATCAGAAGTAAAGAGTCAAATGAGAATAAGGGCTTTGCATTTGTTACTATAAAAGTGTGGAGTTGGCTTCTAAAGCAATTGATGAGC
TGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MPSGLSRHRHRRWSLLSEEEKEVEEIEEIEEEEEEEEEEEVEEEDDGNNDNGINTQNEIDSSEEDLRSFCESIGEVTEVRIIRSKESNENKGFAFVTIKVWSWLLKQLMS

Spg014426 (gene) of Sponge gourd (cylindrica) v1 genome