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Spg014429 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg014429
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionMMS19 nucleotide excision repair protein
Genome locationscaffold3:48467223..48467557
RNA-Seq ExpressionSpg014429
SyntenySpg014429
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0016226 - iron-sulfur cluster assembly (biological process)
GO:0097428 - protein maturation by iron-sulfur cluster transfer (biological process)
GO:0005634 - nucleus (cellular component)
GO:0097361 - CIA complex (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022992063.1 MMS19 nucleotide excision repair protein homolog isoform X2 [Cucurbita maxima]7.5e-2189.39Show/hide
Query:  MLYEAFAHVISDTPLTAILSDAKKLIPMLLDGLLTLSVNIINKDVVYCLLLVLSGILMDRNGKILI
        MLYEAFAHVISDTPLTAILSDAKKLIPMLLDGLL LSVNIINKDVVY LLLVLSGILMD+NG+ ++
Subjt:  MLYEAFAHVISDTPLTAILSDAKKLIPMLLDGLLTLSVNIINKDVVYCLLLVLSGILMDRNGKILI
XP_023547398.1 MMS19 nucleotide excision repair protein homolog isoform X2 [Cucurbita pepo subsp. pepo]1.7e-2092.06Show/hide
Query:  MLYEAFAHVISDTPLTAILSDAKKLIPMLLDGLLTLSVNIINKDVVYCLLLVLSGILMDRNGK
        MLYEAFAHVI DTPLTAILSDAKKLIPMLLDGLL LSVNIINKDVVY LLLVLSGILMD+NG+
Subjt:  MLYEAFAHVISDTPLTAILSDAKKLIPMLLDGLLTLSVNIINKDVVYCLLLVLSGILMDRNGK
XP_038898520.1 MMS19 nucleotide excision repair protein homolog isoform X1 [Benincasa hispida]2.9e-2090.48Show/hide
Query:  MLYEAFAHVISDTPLTAILSDAKKLIPMLLDGLLTLSVNIINKDVVYCLLLVLSGILMDRNGK
        MLY+AFAHVISDTPL+A+LSDAKKLIPMLLDGLLTLSVNIINKDVVY LLLVLSGILM RNG+
Subjt:  MLYEAFAHVISDTPLTAILSDAKKLIPMLLDGLLTLSVNIINKDVVYCLLLVLSGILMDRNGK
XP_038898521.1 MMS19 nucleotide excision repair protein homolog isoform X2 [Benincasa hispida]2.9e-2090.48Show/hide
Query:  MLYEAFAHVISDTPLTAILSDAKKLIPMLLDGLLTLSVNIINKDVVYCLLLVLSGILMDRNGK
        MLY+AFAHVISDTPL+A+LSDAKKLIPMLLDGLLTLSVNIINKDVVY LLLVLSGILM RNG+
Subjt:  MLYEAFAHVISDTPLTAILSDAKKLIPMLLDGLLTLSVNIINKDVVYCLLLVLSGILMDRNGK
XP_038898522.1 MMS19 nucleotide excision repair protein homolog isoform X3 [Benincasa hispida]2.9e-2090.48Show/hide
Query:  MLYEAFAHVISDTPLTAILSDAKKLIPMLLDGLLTLSVNIINKDVVYCLLLVLSGILMDRNGK
        MLY+AFAHVISDTPL+A+LSDAKKLIPMLLDGLLTLSVNIINKDVVY LLLVLSGILM RNG+
Subjt:  MLYEAFAHVISDTPLTAILSDAKKLIPMLLDGLLTLSVNIINKDVVYCLLLVLSGILMDRNGK
TrEMBL top hitse value%identityAlignment
A0A0A0K7A1 MMS19 nucleotide excision repair protein6.9e-2088.89Show/hide
Query:  MLYEAFAHVISDTPLTAILSDAKKLIPMLLDGLLTLSVNIINKDVVYCLLLVLSGILMDRNGK
        MLY+A+AHVISDTPLTAILSDAKK IPMLLDGLLTLSVN INKDVVY LLLVLSGILMD+NG+
Subjt:  MLYEAFAHVISDTPLTAILSDAKKLIPMLLDGLLTLSVNIINKDVVYCLLLVLSGILMDRNGK
A0A6J1GPG0 MMS19 nucleotide excision repair protein3.1e-2093.44Show/hide
Query:  MLYEAFAHVISDTPLTAILSDAKKLIPMLLDGLLTLSVNIINKDVVYCLLLVLSGILMDRN
        MLYEAFAHVISDTPLTAI+SDAKKLIPMLLDGLL LSVNIINKDVVY LLLVLSGILMD+N
Subjt:  MLYEAFAHVISDTPLTAILSDAKKLIPMLLDGLLTLSVNIINKDVVYCLLLVLSGILMDRN
A0A6J1JNP3 MMS19 nucleotide excision repair protein2.0e-1984.29Show/hide
Query:  MLYEAFAHVISDTPLTAILSDAKK----LIPMLLDGLLTLSVNIINKDVVYCLLLVLSGILMDRNGKILI
        MLYEAFAHVISDTPLTAILSDAKK    LIPMLLDGLL LSVNIINKDVVY LLLVLSGILMD+NG+ ++
Subjt:  MLYEAFAHVISDTPLTAILSDAKK----LIPMLLDGLLTLSVNIINKDVVYCLLLVLSGILMDRNGKILI
A0A6J1JWJ7 MMS19 nucleotide excision repair protein2.0e-1984.29Show/hide
Query:  MLYEAFAHVISDTPLTAILSDAKK----LIPMLLDGLLTLSVNIINKDVVYCLLLVLSGILMDRNGKILI
        MLYEAFAHVISDTPLTAILSDAKK    LIPMLLDGLL LSVNIINKDVVY LLLVLSGILMD+NG+ ++
Subjt:  MLYEAFAHVISDTPLTAILSDAKK----LIPMLLDGLLTLSVNIINKDVVYCLLLVLSGILMDRNGKILI
A0A6J1JY03 MMS19 nucleotide excision repair protein3.7e-2189.39Show/hide
Query:  MLYEAFAHVISDTPLTAILSDAKKLIPMLLDGLLTLSVNIINKDVVYCLLLVLSGILMDRNGKILI
        MLYEAFAHVISDTPLTAILSDAKKLIPMLLDGLL LSVNIINKDVVY LLLVLSGILMD+NG+ ++
Subjt:  MLYEAFAHVISDTPLTAILSDAKKLIPMLLDGLLTLSVNIINKDVVYCLLLVLSGILMDRNGKILI
SwissProt top hitse value%identityAlignment
Q0WVF8 MMS19 nucleotide excision repair protein homolog2.4e-0950.79Show/hide
Query:  MLYEAFAHVISDTPLTAILSDAKKLIPMLLDGLLTLSVNIINKDVVYCLLLVLSGILMDRNGK
        ML+ A AHVIS+ P+T IL + KKL P++L+GL  LS++ + K+ ++ LLLVLSG L D  G+
Subjt:  MLYEAFAHVISDTPLTAILSDAKKLIPMLLDGLLTLSVNIINKDVVYCLLLVLSGILMDRNGK
Arabidopsis top hitse value%identityAlignment
AT5G48120.1 ARM repeat superfamily protein1.7e-1050.79Show/hide
Query:  MLYEAFAHVISDTPLTAILSDAKKLIPMLLDGLLTLSVNIINKDVVYCLLLVLSGILMDRNGK
        ML+ A AHVIS+ P+T IL + KKL P++L+GL  LS++ + K+ ++ LLLVLSG L D  G+
Subjt:  MLYEAFAHVISDTPLTAILSDAKKLIPMLLDGLLTLSVNIINKDVVYCLLLVLSGILMDRNGK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTACGAGGCATTTGCACATGTTATATCTGATACTCCACTCACTGCTATATTGAGTGATGCCAAGAAGCTTATTCCTATGCTGCTGGATGGCTTGTTAACATTAAG
TGTGAACATCATCAATAAGGATGTGGTTTATTGCCTTCTTCTCGTTTTATCTGGGATACTGATGGATAGAAATGGTAAGATTCTGATCTATTTCCATGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGTACGAGGCATTTGCACATGTTATATCTGATACTCCACTCACTGCTATATTGAGTGATGCCAAGAAGCTTATTCCTATGCTGCTGGATGGCTTGTTAACATTAAG
TGTGAACATCATCAATAAGGATGTGGTTTATTGCCTTCTTCTCGTTTTATCTGGGATACTGATGGATAGAAATGGTAAGATTCTGATCTATTTCCATGATTAA
Protein sequenceShow/hide protein sequence
MLYEAFAHVISDTPLTAILSDAKKLIPMLLDGLLTLSVNIINKDVVYCLLLVLSGILMDRNGKILIYFHD