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Spg014468 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg014468
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionU2 snRNP auxiliary factor large subunit
Genome locationscaffold3:37011162..37013245
RNA-Seq ExpressionSpg014468
SyntenySpg014468
Gene Ontology termsGO:0006397 - mRNA processing (biological process)
GO:0008380 - RNA splicing (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022929822.1 splicing factor U2af large subunit A-like isoform X2 [Cucurbita moschata]4.6e-3671.05Show/hide
Query:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLPQ
        MLQP   STKVLCL QVV+PE+LI+D DYEDI+EDM  E  KFGALVN+VIPRPRPNE  PGVGK    VFLEYAD+E A  AR+GLNGR+FGG QV+  
Subjt:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLPQ

Query:  FYSENMFAQGEYGA
        FY EN FAQGEY A
Subjt:  FYSENMFAQGEYGA

XP_022929826.1 splicing factor U2af large subunit B-like isoform X6 [Cucurbita moschata]4.6e-3671.05Show/hide
Query:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLPQ
        MLQP   STKVLCL QVV+PE+LI+D DYEDI+EDM  E  KFGALVN+VIPRPRPNE  PGVGK    VFLEYAD+E A  AR+GLNGR+FGG QV+  
Subjt:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLPQ

Query:  FYSENMFAQGEYGA
        FY EN FAQGEY A
Subjt:  FYSENMFAQGEYGA

XP_022929829.1 splicing factor U2af large subunit B-like isoform X9 [Cucurbita moschata]4.6e-3671.05Show/hide
Query:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLPQ
        MLQP   STKVLCL QVV+PE+LI+D DYEDI+EDM  E  KFGALVN+VIPRPRPNE  PGVGK    VFLEYAD+E A  AR+GLNGR+FGG QV+  
Subjt:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLPQ

Query:  FYSENMFAQGEYGA
        FY EN FAQGEY A
Subjt:  FYSENMFAQGEYGA

XP_022992203.1 splicing factor U2af large subunit A-like isoform X4 [Cucurbita maxima]4.6e-3671.05Show/hide
Query:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLPQ
        MLQP   STKVLCL QVV+PE+LI+D DYEDI+EDM  E  KFGALVN+VIPRPRPNE  PGVGK    VFLEYAD+E A  AR+GLNGR+FGG QV+  
Subjt:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLPQ

Query:  FYSENMFAQGEYGA
        FY EN FAQGEY A
Subjt:  FYSENMFAQGEYGA

XP_022992211.1 splicing factor U2af large subunit B-like isoform X11 [Cucurbita maxima]4.6e-3671.05Show/hide
Query:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLPQ
        MLQP   STKVLCL QVV+PE+LI+D DYEDI+EDM  E  KFGALVN+VIPRPRPNE  PGVGK    VFLEYAD+E A  AR+GLNGR+FGG QV+  
Subjt:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLPQ

Query:  FYSENMFAQGEYGA
        FY EN FAQGEY A
Subjt:  FYSENMFAQGEYGA

TrEMBL top hitse value%identityAlignment
A0A6J1JSX0 U2 snRNP auxiliary factor large subunit2.2e-3671.05Show/hide
Query:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLPQ
        MLQP   STKVLCL QVV+PE+LI+D DYEDI+EDM  E  KFGALVN+VIPRPRPNE  PGVGK    VFLEYAD+E A  AR+GLNGR+FGG QV+  
Subjt:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLPQ

Query:  FYSENMFAQGEYGA
        FY EN FAQGEY A
Subjt:  FYSENMFAQGEYGA

A0A6J1JWX9 U2 snRNP auxiliary factor large subunit2.2e-3671.05Show/hide
Query:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLPQ
        MLQP   STKVLCL QVV+PE+LI+D DYEDI+EDM  E  KFGALVN+VIPRPRPNE  PGVGK    VFLEYAD+E A  AR+GLNGR+FGG QV+  
Subjt:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLPQ

Query:  FYSENMFAQGEYGA
        FY EN FAQGEY A
Subjt:  FYSENMFAQGEYGA

A0A6J1JWY0 U2 snRNP auxiliary factor large subunit2.2e-3671.05Show/hide
Query:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLPQ
        MLQP   STKVLCL QVV+PE+LI+D DYEDI+EDM  E  KFGALVN+VIPRPRPNE  PGVGK    VFLEYAD+E A  AR+GLNGR+FGG QV+  
Subjt:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLPQ

Query:  FYSENMFAQGEYGA
        FY EN FAQGEY A
Subjt:  FYSENMFAQGEYGA

A0A6J1JYJ3 U2 snRNP auxiliary factor large subunit2.2e-3671.05Show/hide
Query:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLPQ
        MLQP   STKVLCL QVV+PE+LI+D DYEDI+EDM  E  KFGALVN+VIPRPRPNE  PGVGK    VFLEYAD+E A  AR+GLNGR+FGG QV+  
Subjt:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLPQ

Query:  FYSENMFAQGEYGA
        FY EN FAQGEY A
Subjt:  FYSENMFAQGEYGA

A0A6J1JYK1 U2 snRNP auxiliary factor large subunit2.2e-3671.05Show/hide
Query:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLPQ
        MLQP   STKVLCL QVV+PE+LI+D DYEDI+EDM  E  KFGALVN+VIPRPRPNE  PGVGK    VFLEYAD+E A  AR+GLNGR+FGG QV+  
Subjt:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLPQ

Query:  FYSENMFAQGEYGA
        FY EN FAQGEY A
Subjt:  FYSENMFAQGEYGA

SwissProt top hitse value%identityAlignment
O23212 Splicing factor U2af large subunit A2.2e-2854.78Show/hide
Query:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPN-EEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLP
        MLQP   +T V+CL QVV+ ++L DD +Y DI+EDM  E  KFGAL N+VIPRP PN E + G+GK    VFL+YAD +G+  AR G+NGR+FGG +V+ 
Subjt:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPN-EEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLP

Query:  QFYSENMFAQGEYGA
         +Y E+ F QG+YGA
Subjt:  QFYSENMFAQGEYGA

Q2QKB4 Splicing factor U2af large subunit B1.7e-2555.14Show/hide
Query:  TKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPN-EEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLPQFYSENMF
        TKV+CL QVV+ ++L DD +YEDI+EDM  EA K+G LV +VIPRP P+ E + GVGK    VFLEYADV+G+  A+  ++GR+FGG  V+  FY EN F
Subjt:  TKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPN-EEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLPQFYSENMF

Query:  AQGEYGA
        A  +Y A
Subjt:  AQGEYGA

Q8L716 Splicing factor U2af large subunit B1.3e-2855.75Show/hide
Query:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEE-IPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLP
        M QP    TK++CL QVV+ +DL DD +Y +I+EDM  E  KFG LVN+VIPRP P+ +  PGVGK    VFLEYADV+G+  AR+G+NGR+FGG QV+ 
Subjt:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEE-IPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLP

Query:  QFYSENMFAQGEY
         +Y E+ +AQG+Y
Subjt:  QFYSENMFAQGEY

Q9ZR39 Splicing factor U2af large subunit A2.1e-3161.74Show/hide
Query:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPN-EEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLP
        MLQP   +TKVLCL +VV+ ++L DD DY+DILEDM  E  KFGALVN+VIPRP PN    PG+GK    VFLEYADV+G+  AR GLNGR+FGG QV+ 
Subjt:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPN-EEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLP

Query:  QFYSENMFAQGEYGA
         FY EN F++G+Y A
Subjt:  QFYSENMFAQGEYGA

Q9ZR40 Splicing factor U2af large subunit B8.8e-3060.18Show/hide
Query:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPN-EEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLP
        MLQP   +TKVL L +V+S ++L DD DY+DILEDM  E  KFG+LVN+VIPRP PN E  PGVGK    VFLEYADV+ +  AR  LNGR+FGG QV+ 
Subjt:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPN-EEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLP

Query:  QFYSENMFAQGEY
         FY EN F +G+Y
Subjt:  QFYSENMFAQGEY

Arabidopsis top hitse value%identityAlignment
AT1G60830.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.6e-3158.41Show/hide
Query:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEE-IPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLP
        MLQP    TK++CL QVV+ +DL DDA+Y DI+EDM  E  KFG LVN+VIPRP P+ +  PGVGK    VFLEYADV+G+  AR+G+NGR+FGG QV+ 
Subjt:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEE-IPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLP

Query:  QFYSENMFAQGEY
         +Y E+ +AQG+Y
Subjt:  QFYSENMFAQGEY

AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor9.0e-3055.75Show/hide
Query:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEE-IPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLP
        M QP    TK++CL QVV+ +DL DD +Y +I+EDM  E  KFG LVN+VIPRP P+ +  PGVGK    VFLEYADV+G+  AR+G+NGR+FGG QV+ 
Subjt:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEE-IPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLP

Query:  QFYSENMFAQGEY
         +Y E+ +AQG+Y
Subjt:  QFYSENMFAQGEY

AT4G36690.1 U2 snRNP auxilliary factor, large subunit, splicing factor1.5e-2954.78Show/hide
Query:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPN-EEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLP
        MLQP   +T V+CL QVV+ ++L DD +Y DI+EDM  E  KFGAL N+VIPRP PN E + G+GK    VFL+YAD +G+  AR G+NGR+FGG +V+ 
Subjt:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPN-EEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLP

Query:  QFYSENMFAQGEYGA
         +Y E+ F QG+YGA
Subjt:  QFYSENMFAQGEYGA

AT4G36690.2 U2 snRNP auxilliary factor, large subunit, splicing factor8.2e-0754.55Show/hide
Query:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFG
        MLQP   +T V+CL QVV+ ++L DD +Y DI+EDM  E  KFG
Subjt:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFG

AT4G36690.4 U2 snRNP auxilliary factor, large subunit, splicing factor1.5e-2954.78Show/hide
Query:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPN-EEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLP
        MLQP   +T V+CL QVV+ ++L DD +Y DI+EDM  E  KFGAL N+VIPRP PN E + G+GK    VFL+YAD +G+  AR G+NGR+FGG +V+ 
Subjt:  MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPN-EEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLP

Query:  QFYSENMFAQGEYGA
         +Y E+ F QG+YGA
Subjt:  QFYSENMFAQGEYGA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCAGCCGGAAGTTGAATCCACCAAAGTCCTTTGTCTCGCACAAGTTGTTTCTCCCGAAGACCTCATCGACGACGCGGATTACGAAGATATTCTTGAAGACATGTG
CGCGGAAGCCGCAAAATTCGGTGCGTTAGTGAACATTGTGATCCCTCGTCCGAGACCTAATGAAGAAATTCCTGGAGTTGGAAAGGTAGCTGCATATGTGTTTTTGGAGT
ATGCTGATGTAGAGGGTGCAGTTGCAGCTCGTGCTGGTTTGAATGGGAGACAATTTGGAGGAAAACAAGTGTTGCCTCAATTCTATTCGGAGAACATGTTTGCACAAGGA
GAGTATGGTGCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTCAGCCGGAAGTTGAATCCACCAAAGTCCTTTGTCTCGCACAAGTTGTTTCTCCCGAAGACCTCATCGACGACGCGGATTACGAAGATATTCTTGAAGACATGTG
CGCGGAAGCCGCAAAATTCGGTGCGTTAGTGAACATTGTGATCCCTCGTCCGAGACCTAATGAAGAAATTCCTGGAGTTGGAAAGGTAGCTGCATATGTGTTTTTGGAGT
ATGCTGATGTAGAGGGTGCAGTTGCAGCTCGTGCTGGTTTGAATGGGAGACAATTTGGAGGAAAACAAGTGTTGCCTCAATTCTATTCGGAGAACATGTTTGCACAAGGA
GAGTATGGTGCCTAA
Protein sequenceShow/hide protein sequence
MLQPEVESTKVLCLAQVVSPEDLIDDADYEDILEDMCAEAAKFGALVNIVIPRPRPNEEIPGVGKVAAYVFLEYADVEGAVAARAGLNGRQFGGKQVLPQFYSENMFAQG
EYGA