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Spg014486 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg014486
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionthioredoxin-like protein 4B
Genome locationscaffold3:40569089..40573674
RNA-Seq ExpressionSpg014486
SyntenySpg014486
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
InterPro domainsIPR004123 - Dim1 family
IPR036249 - Thioredoxin-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575968.1 Thioredoxin-like protein 4B, partial [Cucurbita argyrosperma subsp. sororia]1.9e-7798.68Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLT KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
        HTKWIGAFH+KQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
Subjt:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV

XP_004139666.1 thioredoxin-like protein 4B [Cucumis sativus]1.2e-7696.03Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLTKK EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFAS+ALVDIDSEEIQVY+KYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
        HTKW+GAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQL YKDV
Subjt:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV

XP_022152114.1 thioredoxin-like protein 4B [Momordica charantia]1.1e-7798.68Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDI+LIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
        HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKD+
Subjt:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV

XP_022953679.1 thioredoxin-like protein 4B [Cucurbita moschata]7.2e-7798.01Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLT KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
        HTKWIGAFH+KQDFIDVVEAIFRGAMKGKLIV+CPLPPERIPKYQLLYKDV
Subjt:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV

XP_022991475.1 thioredoxin-like protein 4B [Cucurbita maxima]3.2e-7798.01Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLT KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEE+QVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
        HTKWIGAFH+KQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
Subjt:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV

TrEMBL top hitse value%identityAlignment
A0A1S3BH38 thioredoxin-like protein 4B1.1e-7594.7Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLTKK EVDS+IRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEE+QVY+KYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
        HTKW+GAFHQKQ+FIDVVEAIFRGAMKGKLIVNCPLPPE+IPKYQLL+KDV
Subjt:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV

A0A6J1DGN8 thioredoxin-like protein 4B5.4e-7898.68Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDI+LIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
        HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKD+
Subjt:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV

A0A6J1GQC5 thioredoxin-like protein 4B3.5e-7798.01Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLT KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
        HTKWIGAFH+KQDFIDVVEAIFRGAMKGKLIV+CPLPPERIPKYQLLYKDV
Subjt:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV

A0A6J1JT18 thioredoxin-like protein 4B1.6e-7798.01Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLLRTLT KREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEE+QVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
        HTKWIGAFH+KQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
Subjt:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV

A0A6P4ATD0 thioredoxin-like protein 4B2.3e-7390.73Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLL TLTKKREVDSII+DTIDKVL+LRFGR SDSVCLLLDD+L+K AREVSKFA+IALVDIDSE++QVY+ YFDITLIPST+FFFNAHHMKMDSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
        HTKW+GAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
Subjt:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV

SwissProt top hitse value%identityAlignment
P83876 Thioredoxin-like protein 4A1.9e-1635.56Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSY+L  L    +VD  I    D+V+++RFG   D  C+ +D++L   A +V  FA I LVDI   E+  + K +++    + +FFF   H+ +D GT +
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCP
        + K   A   KQ+ +D++E ++RGA KG+ +V  P
Subjt:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCP

P83877 Thioredoxin-like protein 4A1.9e-1635.56Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSY+L  L    +VD  I    D+V+++RFG   D  C+ +D++L   A +V  FA I LVDI   E+  + K +++    + +FFF   H+ +D GT +
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCP
        + K   A   KQ+ +D++E ++RGA KG+ +V  P
Subjt:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCP

Q8BUH1 Thioredoxin-like protein 4B1.8e-4659.6Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MS+LL  LT K+EVD  I+ T +KVL+LRFGR  D VCL LDDIL+K + ++SK A+I LVD+D     VY +YFDI+ IPSTVFFFN  HMK+D G+ D
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
        HTK++G+F  KQDFID++E I+RGAM+GKLIV  P+ P+ +PKY LLY+D+
Subjt:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV

Q9FE62 Thioredoxin-like protein YLS81.9e-1637.96Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDI-DSEEIQVYIKYFDITLIPSTV-FFFNAHHMKMDSGT
        MSYLL  L     VD  I    ++++++RFG   D  C+ +D++LA  A  +  FA I LVDI +  +     + +D    PSTV FFF   H+ +D GT
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDI-DSEEIQVYIKYFDITLIPSTV-FFFNAHHMKMDSGT

Query:  ADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCP
         ++ K   A   KQ+FID++E ++RGA KG+ +V  P
Subjt:  ADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCP

Q9NX01 Thioredoxin-like protein 4B8.0e-4760.26Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MS+LL  LT K+EVD  I+ T +KVL+LRFGR  D VCL LDDIL+K + ++SK A+I LVD+D  +  VY +YFDI+ IPSTVFFFN  HMK+D G+ D
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
        HTK++G+F  KQDFID++E I+RGAM+GKLIV  P+ P+ IPKY LLY+D+
Subjt:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV

Arabidopsis top hitse value%identityAlignment
AT3G24730.1 mRNA splicing factor, thioredoxin-like U5 snRNP5.9e-6978.81Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD
        MSYLL+TLT K E+D +IRDTID+VL+LRFGR SD+VCL  D+ILAK  R+VSKFA +ALVD+DSE++QVY+KYFDITL PST+FFFNAHHMK+DSGTAD
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTAD

Query:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV
        HTKW+GAFH KQDFIDVVEAI+RGAMKGK+IV CP+PPERIPKYQL+YKDV
Subjt:  HTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV

AT5G08290.1 mRNA splicing factor, thioredoxin-like U5 snRNP1.4e-1737.96Show/hide
Query:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDI-DSEEIQVYIKYFDITLIPSTV-FFFNAHHMKMDSGT
        MSYLL  L     VD  I    ++++++RFG   D  C+ +D++LA  A  +  FA I LVDI +  +     + +D    PSTV FFF   H+ +D GT
Subjt:  MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDI-DSEEIQVYIKYFDITLIPSTV-FFFNAHHMKMDSGT

Query:  ADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCP
         ++ K   A   KQ+FID++E ++RGA KG+ +V  P
Subjt:  ADHTKWIGAFHQKQDFIDVVEAIFRGAMKGKLIVNCP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTACCTTCTAAGGACTTTAACAAAGAAGAGAGAAGTGGATTCCATCATTAGGGACACCATTGATAAGGTCCTCATTCTACGATTTGGGCGGTGTTCTGATTCAGT
TTGTCTCCTCCTTGACGATATTCTTGCTAAGTGCGCACGAGAAGTGTCAAAGTTTGCTTCAATAGCACTGGTTGATATTGATTCAGAAGAAATACAGGTTTACATCAAGT
ATTTTGACATAACACTTATACCATCCACTGTTTTCTTCTTCAATGCTCATCATATGAAGATGGATTCAGGGACTGCAGATCATACAAAGTGGATTGGTGCTTTTCATCAA
AAGCAGGATTTTATTGATGTTGTGGAGGCAATATTTAGAGGAGCAATGAAAGGCAAGCTCATTGTGAATTGTCCGTTGCCTCCGGAGCGAATTCCTAAATATCAGTTATT
ATACAAGGATGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCTACCTTCTAAGGACTTTAACAAAGAAGAGAGAAGTGGATTCCATCATTAGGGACACCATTGATAAGGTCCTCATTCTACGATTTGGGCGGTGTTCTGATTCAGT
TTGTCTCCTCCTTGACGATATTCTTGCTAAGTGCGCACGAGAAGTGTCAAAGTTTGCTTCAATAGCACTGGTTGATATTGATTCAGAAGAAATACAGGTTTACATCAAGT
ATTTTGACATAACACTTATACCATCCACTGTTTTCTTCTTCAATGCTCATCATATGAAGATGGATTCAGGGACTGCAGATCATACAAAGTGGATTGGTGCTTTTCATCAA
AAGCAGGATTTTATTGATGTTGTGGAGGCAATATTTAGAGGAGCAATGAAAGGCAAGCTCATTGTGAATTGTCCGTTGCCTCCGGAGCGAATTCCTAAATATCAGTTATT
ATACAAGGATGTGTAG
Protein sequenceShow/hide protein sequence
MSYLLRTLTKKREVDSIIRDTIDKVLILRFGRCSDSVCLLLDDILAKCAREVSKFASIALVDIDSEEIQVYIKYFDITLIPSTVFFFNAHHMKMDSGTADHTKWIGAFHQ
KQDFIDVVEAIFRGAMKGKLIVNCPLPPERIPKYQLLYKDV