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Spg014497 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg014497
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibosome biogenesis NEP1-like protein
Genome locationscaffold3:41434039..41435260
RNA-Seq ExpressionSpg014497
SyntenySpg014497
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33694.1 hypothetical protein [Cucumis melo subsp. melo]2.2e-5278.67Show/hide
Query:  MLVGTRIDG-KRLASSTTAQAATHSHAAAAAS---SKSSEYMKGEYAPIYIVFGMVAVAVSIATHTAKQQLMHSPVVNLSKKKRESISEVDDPDTVISSA
        MLVGTRI G +R ASSTTA +A  S +++++S   S  SEYMKGEYAPIYIV GMVAV VSIATHTAKQQL+HSP+VN SKKKRESI EV+DPDTVI+SA
Subjt:  MLVGTRIDG-KRLASSTTAQAATHSHAAAAAS---SKSSEYMKGEYAPIYIVFGMVAVAVSIATHTAKQQLMHSPVVNLSKKKRESISEVDDPDTVISSA

Query:  DKFVNKSFLRKVAHVQDDNKTLKDPVHPDPFTRPRNAETLKTAGVDPTRR
        DKF+NKSFLRKVAH+QDD KTL DPVH DPFTRPRNAETLKTAGVDPTRR
Subjt:  DKFVNKSFLRKVAHVQDDNKTLKDPVHPDPFTRPRNAETLKTAGVDPTRR

KAA0039866.1 putative Ribosome biogenesis protein NEP1-like [Cucumis melo var. makuwa]3.1e-5479.47Show/hide
Query:  MLVGTRIDG-KRLASSTTAQAATHSHAAAAASSK----SSEYMKGEYAPIYIVFGMVAVAVSIATHTAKQQLMHSPVVNLSKKKRESISEVDDPDTVISS
        MLVGTRI G +R ASSTTA +A  S +++++SSK     SEYMKGEYAPIYIV GMVAV VSIATHTAKQQL+HSP+VN SKKKRESI EV+DPDTVI+S
Subjt:  MLVGTRIDG-KRLASSTTAQAATHSHAAAAASSK----SSEYMKGEYAPIYIVFGMVAVAVSIATHTAKQQLMHSPVVNLSKKKRESISEVDDPDTVISS

Query:  ADKFVNKSFLRKVAHVQDDNKTLKDPVHPDPFTRPRNAETLKTAGVDPTRR
        ADKF+NKSFLRKVAH+QDD KTL DPVHPDPFTRPRNAETLKTAGVDPTRR
Subjt:  ADKFVNKSFLRKVAHVQDDNKTLKDPVHPDPFTRPRNAETLKTAGVDPTRR

XP_004140656.2 uncharacterized protein LOC101206372 [Cucumis sativus]7.6e-5373.33Show/hide
Query:  FRHSLTN-VCRSMLVGTRIDG-KRLASSTTAQAATHSHAAAAASSKS------SEYMKGEYAPIYIVFGMVAVAVSIATHTAKQQLMHSPVVNLSKKKRE
        FR SL N + +SMLV TRI G +R +SSTT  +A +   A++ SS S      SEYMKGEYAPIYIV GMVAV VSIATHTAKQQL+HSP+VN SKKKRE
Subjt:  FRHSLTN-VCRSMLVGTRIDG-KRLASSTTAQAATHSHAAAAASSKS------SEYMKGEYAPIYIVFGMVAVAVSIATHTAKQQLMHSPVVNLSKKKRE

Query:  SISEVDDPDTVISSADKFVNKSFLRKVAHVQDDNKTLKDPVHPDPFTRPRNAETLKTAGVDPTRR
        SI EV+DPDTVI+SADKF+NKSFLRKVAH+Q D KTL DPVHPDPFTRPRNAETLKTAG+DPTRR
Subjt:  SISEVDDPDTVISSADKFVNKSFLRKVAHVQDDNKTLKDPVHPDPFTRPRNAETLKTAGVDPTRR

XP_008459927.1 PREDICTED: uncharacterized protein LOC103498899 [Cucumis melo]3.1e-5476.54Show/hide
Query:  FRHSLTN-VCRSMLVGTRIDG-KRLASSTTAQAATHSHAAAAAS---SKSSEYMKGEYAPIYIVFGMVAVAVSIATHTAKQQLMHSPVVNLSKKKRESIS
        FR SL N + +SMLVGTRI G +R ASSTTA +A  S +++++S   S  SEYMKGEYAPIYIV GMVAV VSIATHTAKQQL+HSP+VN SKKKRESI 
Subjt:  FRHSLTN-VCRSMLVGTRIDG-KRLASSTTAQAATHSHAAAAAS---SKSSEYMKGEYAPIYIVFGMVAVAVSIATHTAKQQLMHSPVVNLSKKKRESIS

Query:  EVDDPDTVISSADKFVNKSFLRKVAHVQDDNKTLKDPVHPDPFTRPRNAETLKTAGVDPTRR
        EV+DPDTVI+SADKF+NKSFLRKVAH+QDD KTL DPVH DPFTRPRNAETLKTAGVDPTRR
Subjt:  EVDDPDTVISSADKFVNKSFLRKVAHVQDDNKTLKDPVHPDPFTRPRNAETLKTAGVDPTRR

XP_038906484.1 uncharacterized protein LOC120092464 [Benincasa hispida]6.2e-5575Show/hide
Query:  FRHSLTN-VCRSMLVGTRIDGK-RLASSTTAQAATHSHAAAAAS---------SKSSEYMKGEYAPIYIVFGMVAVAVSIATHTAKQQLMHSPVVNLSKK
        F  SLTN V ++MLVG+RI GK RLASSTTA AA +   A+++S         S SSEYMKGEYAPIYIV GMVAVAVSI THTAKQQL+HSPVVN SKK
Subjt:  FRHSLTN-VCRSMLVGTRIDGK-RLASSTTAQAATHSHAAAAAS---------SKSSEYMKGEYAPIYIVFGMVAVAVSIATHTAKQQLMHSPVVNLSKK

Query:  KRESISEVDDPDTVISSADKFVNKSFLRKVAHVQDDNKTLKDPVHPDPFTRPRNAETLKTAGVDPTRR
        KRESI EVDDPDT+I+SA+KF+NKSFLRKVAH+Q+D KTL DPVHP+PFTRPRNAETLKTAGVDPTRR
Subjt:  KRESISEVDDPDTVISSADKFVNKSFLRKVAHVQDDNKTLKDPVHPDPFTRPRNAETLKTAGVDPTRR

TrEMBL top hitse value%identityAlignment
A0A0A0KC39 Uncharacterized protein3.7e-5373.33Show/hide
Query:  FRHSLTN-VCRSMLVGTRIDG-KRLASSTTAQAATHSHAAAAASSKS------SEYMKGEYAPIYIVFGMVAVAVSIATHTAKQQLMHSPVVNLSKKKRE
        FR SL N + +SMLV TRI G +R +SSTT  +A +   A++ SS S      SEYMKGEYAPIYIV GMVAV VSIATHTAKQQL+HSP+VN SKKKRE
Subjt:  FRHSLTN-VCRSMLVGTRIDG-KRLASSTTAQAATHSHAAAAASSKS------SEYMKGEYAPIYIVFGMVAVAVSIATHTAKQQLMHSPVVNLSKKKRE

Query:  SISEVDDPDTVISSADKFVNKSFLRKVAHVQDDNKTLKDPVHPDPFTRPRNAETLKTAGVDPTRR
        SI EV+DPDTVI+SADKF+NKSFLRKVAH+Q D KTL DPVHPDPFTRPRNAETLKTAG+DPTRR
Subjt:  SISEVDDPDTVISSADKFVNKSFLRKVAHVQDDNKTLKDPVHPDPFTRPRNAETLKTAGVDPTRR

A0A1S3CBE5 uncharacterized protein LOC1034988991.5e-5476.54Show/hide
Query:  FRHSLTN-VCRSMLVGTRIDG-KRLASSTTAQAATHSHAAAAAS---SKSSEYMKGEYAPIYIVFGMVAVAVSIATHTAKQQLMHSPVVNLSKKKRESIS
        FR SL N + +SMLVGTRI G +R ASSTTA +A  S +++++S   S  SEYMKGEYAPIYIV GMVAV VSIATHTAKQQL+HSP+VN SKKKRESI 
Subjt:  FRHSLTN-VCRSMLVGTRIDG-KRLASSTTAQAATHSHAAAAAS---SKSSEYMKGEYAPIYIVFGMVAVAVSIATHTAKQQLMHSPVVNLSKKKRESIS

Query:  EVDDPDTVISSADKFVNKSFLRKVAHVQDDNKTLKDPVHPDPFTRPRNAETLKTAGVDPTRR
        EV+DPDTVI+SADKF+NKSFLRKVAH+QDD KTL DPVH DPFTRPRNAETLKTAGVDPTRR
Subjt:  EVDDPDTVISSADKFVNKSFLRKVAHVQDDNKTLKDPVHPDPFTRPRNAETLKTAGVDPTRR

A0A5D3DLZ1 Putative Ribosome biogenesis protein NEP1-like1.5e-5479.47Show/hide
Query:  MLVGTRIDG-KRLASSTTAQAATHSHAAAAASSK----SSEYMKGEYAPIYIVFGMVAVAVSIATHTAKQQLMHSPVVNLSKKKRESISEVDDPDTVISS
        MLVGTRI G +R ASSTTA +A  S +++++SSK     SEYMKGEYAPIYIV GMVAV VSIATHTAKQQL+HSP+VN SKKKRESI EV+DPDTVI+S
Subjt:  MLVGTRIDG-KRLASSTTAQAATHSHAAAAASSK----SSEYMKGEYAPIYIVFGMVAVAVSIATHTAKQQLMHSPVVNLSKKKRESISEVDDPDTVISS

Query:  ADKFVNKSFLRKVAHVQDDNKTLKDPVHPDPFTRPRNAETLKTAGVDPTRR
        ADKF+NKSFLRKVAH+QDD KTL DPVHPDPFTRPRNAETLKTAGVDPTRR
Subjt:  ADKFVNKSFLRKVAHVQDDNKTLKDPVHPDPFTRPRNAETLKTAGVDPTRR

A0A6J1D5I0 uncharacterized protein LOC111017496 isoform X15.3e-5275.62Show/hide
Query:  MAFRHSLTNVCRSMLVG--TRIDGKR-LASSTTAQAATHSHAAAAASSKSSEYMKGEYAPIYIVFGMVAVAVSIATHTAKQQLMHSPVVNLSKKKRESIS
        MAFR   T + +SMLVG  +RI+GKR  ASSTT         A+++SS  SEYMKGEYAPIYIV GMV VAV+I THTAKQQL+HSPVV LSKKKRESI 
Subjt:  MAFRHSLTNVCRSMLVG--TRIDGKR-LASSTTAQAATHSHAAAAASSKSSEYMKGEYAPIYIVFGMVAVAVSIATHTAKQQLMHSPVVNLSKKKRESIS

Query:  EVDDPDTVISSADKFVNKSFLRKVAHVQDDNKTLKDPVHPDPFTRPRNAETLKTAGVDPT
        EVDDPDTVI+SADKFVNKSFLRKVAH+QD NKTL+DP HPDPFTRPRNAETLKTAGVDPT
Subjt:  EVDDPDTVISSADKFVNKSFLRKVAHVQDDNKTLKDPVHPDPFTRPRNAETLKTAGVDPT

E5GB52 Uncharacterized protein1.1e-5278.67Show/hide
Query:  MLVGTRIDG-KRLASSTTAQAATHSHAAAAAS---SKSSEYMKGEYAPIYIVFGMVAVAVSIATHTAKQQLMHSPVVNLSKKKRESISEVDDPDTVISSA
        MLVGTRI G +R ASSTTA +A  S +++++S   S  SEYMKGEYAPIYIV GMVAV VSIATHTAKQQL+HSP+VN SKKKRESI EV+DPDTVI+SA
Subjt:  MLVGTRIDG-KRLASSTTAQAATHSHAAAAAS---SKSSEYMKGEYAPIYIVFGMVAVAVSIATHTAKQQLMHSPVVNLSKKKRESISEVDDPDTVISSA

Query:  DKFVNKSFLRKVAHVQDDNKTLKDPVHPDPFTRPRNAETLKTAGVDPTRR
        DKF+NKSFLRKVAH+QDD KTL DPVH DPFTRPRNAETLKTAGVDPTRR
Subjt:  DKFVNKSFLRKVAHVQDDNKTLKDPVHPDPFTRPRNAETLKTAGVDPTRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G63060.1 unknown protein2.4e-2846.5Show/hide
Query:  MAFRHSLTNVCRSMLVGTRIDGKRLASSTTAQAATHSHAAAAASSKSSEYMKGEYAPIYIVFGMVAVAVSIATHTAKQQLMHSPVVNLSKKKRESISEVD
        MAFR  +T+  R   VG +  G R  ++T A  A  ++      +K S  + GE+AP+ I+ G V +AV +A H+ KQQLMH+P ++  K +R +++EVD
Subjt:  MAFRHSLTNVCRSMLVGTRIDGKRLASSTTAQAATHSHAAAAASSKSSEYMKGEYAPIYIVFGMVAVAVSIATHTAKQQLMHSPVVNLSKKKRESISEVD

Query:  DPDTVISSADKFVNKSFLRKVAHVQDDNKT-LKDPVHPDPFTRPRNAETLKTAGVDP
        DP+  +SSADKF+NKS+LRKV  +QD +K  L DP  P+PFT PRNAETL + GV P
Subjt:  DPDTVISSADKFVNKSFLRKVAHVQDDNKT-LKDPVHPDPFTRPRNAETLKTAGVDP

AT5G07330.1 unknown protein3.4e-1935.42Show/hide
Query:  KRLASSTTAQAATHSHAAAAASSK--------SSEYMKGEYAPIYIVFGMVAVAVSIATHTAKQQLMHSPVVNLSKKKRESISEVDDPDTVISSADKFVN
        +RL + T A     S A + A+++        ++   KG++ P+Y+  G+++++V+   +TA   L  +P V ++KK RE++ E++DPD V++ AD+F N
Subjt:  KRLASSTTAQAATHSHAAAAASSK--------SSEYMKGEYAPIYIVFGMVAVAVSIATHTAKQQLMHSPVVNLSKKKRESISEVDDPDTVISSADKFVN

Query:  KSFLRKVAHVQDDNK--TLKDPVHPDPFTRPRNAETLKTAGVDP
        +S+ RK+AHVQ+ +K   + DP+  D F     A TLK  GVDP
Subjt:  KSFLRKVAHVQDDNK--TLKDPVHPDPFTRPRNAETLKTAGVDP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTCAGACACTCTCTCACAAACGTTTGCAGATCAATGCTCGTCGGAACTAGGATCGACGGGAAACGTCTAGCGTCGTCGACCACCGCTCAGGCCGCCACGCACTC
TCATGCTGCTGCTGCTGCTTCTTCTAAGAGCAGCGAGTACATGAAGGGCGAGTACGCTCCAATCTACATTGTGTTTGGAATGGTGGCGGTTGCCGTGTCGATCGCAACCC
ACACGGCGAAGCAGCAGCTGATGCATTCGCCGGTGGTCAACCTGAGCAAGAAGAAGAGGGAGAGCATTTCGGAGGTGGATGATCCCGACACCGTGATCTCTTCTGCCGAC
AAGTTCGTCAACAAATCCTTTCTTAGGAAGGTGGCCCACGTCCAGGATGACAACAAAACGCTAAAGGACCCCGTCCACCCGGATCCTTTTACCCGGCCACGTAATGCCGA
AACTCTGAAAACTGCTGGAGTGGATCCTACCCGTCGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTTCAGACACTCTCTCACAAACGTTTGCAGATCAATGCTCGTCGGAACTAGGATCGACGGGAAACGTCTAGCGTCGTCGACCACCGCTCAGGCCGCCACGCACTC
TCATGCTGCTGCTGCTGCTTCTTCTAAGAGCAGCGAGTACATGAAGGGCGAGTACGCTCCAATCTACATTGTGTTTGGAATGGTGGCGGTTGCCGTGTCGATCGCAACCC
ACACGGCGAAGCAGCAGCTGATGCATTCGCCGGTGGTCAACCTGAGCAAGAAGAAGAGGGAGAGCATTTCGGAGGTGGATGATCCCGACACCGTGATCTCTTCTGCCGAC
AAGTTCGTCAACAAATCCTTTCTTAGGAAGGTGGCCCACGTCCAGGATGACAACAAAACGCTAAAGGACCCCGTCCACCCGGATCCTTTTACCCGGCCACGTAATGCCGA
AACTCTGAAAACTGCTGGAGTGGATCCTACCCGTCGTTAG
Protein sequenceShow/hide protein sequence
MAFRHSLTNVCRSMLVGTRIDGKRLASSTTAQAATHSHAAAAASSKSSEYMKGEYAPIYIVFGMVAVAVSIATHTAKQQLMHSPVVNLSKKKRESISEVDDPDTVISSAD
KFVNKSFLRKVAHVQDDNKTLKDPVHPDPFTRPRNAETLKTAGVDPTRR