; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg014584 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg014584
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold3:31577366..31582630
RNA-Seq ExpressionSpg014584
SyntenySpg014584
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043275.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.8e-2743.26Show/hide
Query:  MKARGSLIQFGTFDPIIVWSQPEA-PGNDFPERTLYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPIL
        + A GSLIQFG+ +P++++  PEA   NDF      +E+     +QI+D D GWTLVTRRK +KQN+ QK+SR ++E++R  KS+R+  +K +R+L PI+
Subjt:  MKARGSLIQFGTFDPIIVWSQPEA-PGNDFPERTLYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPIL

Query:  EENEEHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENV
        EE+EE  +   P+TLK+FF   F     +IV CH +  T+DD   S + E   K EDL S  I+D LL+++ E K+ +
Subjt:  EENEEHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENV

KAA0046553.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-2237.78Show/hide
Query:  NMLMKARGSLIQFGTFDPIIVWSQPEAPGNDFPERTLYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKP
        N  + A GSLIQFG+ +P++++S PE    D        + L+E  +Q+++V+ GWTLVTRRK  KQ++ QK+S  ++ +  K KS+R+N +K +R+  P
Subjt:  NMLMKARGSLIQFGTFDPIIVWSQPEAPGNDFPERTLYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKP

Query:  ILEENEEHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENV
        I+E++E   +P  P+ LK+FFP+ F     +IV+CH  + TE+D       +   + EDL S  I+D LL+++ E K+ +
Subjt:  ILEENEEHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENV

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]3.1e-2338.98Show/hide
Query:  MKARGSLIQFGTFDPIIVWSQPEAPGNDFPERTLYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILE
        + A GSLIQFG+ +P++++S PE    D        +  +E  +Q+++V+ GWTLVTRRK +KQ++ QK+S  ++ ++ K KS+R+N +K  R+  PI+E
Subjt:  MKARGSLIQFGTFDPIIVWSQPEAPGNDFPERTLYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILE

Query:  ENEEHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENV
        E+E   +P  P+ LK+FFP+ F     +IV+CH  + TE+D   S   E   K EDL    I+D LL+++ E K+ +
Subjt:  ENEEHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENV

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]1.7e-0557.14Show/hide
Query:  MVIQENPLFDYSTSSSEQA-KETSDPDVMSVMMADIGTGEERMAELERKVNMLMKA
        +VI+ENP  D   S SE++ +E   P++MSVM+ D+ T E+RMAELE+KVNMLMKA
Subjt:  MVIQENPLFDYSTSSSEQA-KETSDPDVMSVMMADIGTGEERMAELERKVNMLMKA

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]3.1e-2338.98Show/hide
Query:  MKARGSLIQFGTFDPIIVWSQPEAPGNDFPERTLYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILE
        + A GSLIQFG+ +P++++S PE    D        +  +E  +Q+++V+ GWTLVTRRK +KQ++ QK+S  ++ ++ K KS+R+N +K  R+  PI+E
Subjt:  MKARGSLIQFGTFDPIIVWSQPEAPGNDFPERTLYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILE

Query:  ENEEHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENV
        E+E   +P  P+ LK+FFP+ F     +IV+CH  + TE+D   S   E   K EDL    I+D LL+++ E K+ +
Subjt:  ENEEHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENV

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]3.1e-2338.98Show/hide
Query:  MKARGSLIQFGTFDPIIVWSQPEAPGNDFPERTLYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILE
        + A GSLIQFG+ +P++++S PE    D        +  +E  +Q+++V+ GWTLVTRRK +KQ++ QK+S  ++ ++ K KS+R+N +K  R+  PI+E
Subjt:  MKARGSLIQFGTFDPIIVWSQPEAPGNDFPERTLYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILE

Query:  ENEEHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENV
        E+E   +P  P+ LK+FFP+ F     +IV+CH  + TE+D   S   E   K EDL    I+D LL+++ E K+ +
Subjt:  ENEEHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENV

TrEMBL top hitse value%identityAlignment
A0A5A7TPD2 Ty3-gypsy retrotransposon protein3.8e-2743.26Show/hide
Query:  MKARGSLIQFGTFDPIIVWSQPEA-PGNDFPERTLYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPIL
        + A GSLIQFG+ +P++++  PEA   NDF      +E+     +QI+D D GWTLVTRRK +KQN+ QK+SR ++E++R  KS+R+  +K +R+L PI+
Subjt:  MKARGSLIQFGTFDPIIVWSQPEA-PGNDFPERTLYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPIL

Query:  EENEEHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENV
        EE+EE  +   P+TLK+FF   F     +IV CH +  T+DD   S + E   K EDL S  I+D LL+++ E K+ +
Subjt:  EENEEHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENV

A0A5A7TZU9 Ribonuclease H1.5e-2338.98Show/hide
Query:  MKARGSLIQFGTFDPIIVWSQPEAPGNDFPERTLYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILE
        + A GSLIQFG+ +P++++S PE    D        +  +E  +Q+++V+ GWTLVTRRK +KQ++ QK+S  ++ ++ K KS+R+N +K  R+  PI+E
Subjt:  MKARGSLIQFGTFDPIIVWSQPEAPGNDFPERTLYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILE

Query:  ENEEHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENV
        E+E   +P  P+ LK+FFP+ F     +IV+CH  + TE+D   S   E   K EDL    I+D LL+++ E K+ +
Subjt:  ENEEHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENV

A0A5A7TZU9 Ribonuclease H8.2e-0657.14Show/hide
Query:  MVIQENPLFDYSTSSSEQA-KETSDPDVMSVMMADIGTGEERMAELERKVNMLMKA
        +VI+ENP  D   S SE++ +E   P++MSVM+ D+ T E+RMAELE+KVNMLMKA
Subjt:  MVIQENPLFDYSTSSSEQA-KETSDPDVMSVMMADIGTGEERMAELERKVNMLMKA

A0A5A7TZU9 Ribonuclease H1.5e-2338.98Show/hide
Query:  MKARGSLIQFGTFDPIIVWSQPEAPGNDFPERTLYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILE
        + A GSLIQFG+ +P++++S PE    D        +  +E  +Q+++V+ GWTLVTRRK +KQ++ QK+S  ++ ++ K KS+R+N +K  R+  PI+E
Subjt:  MKARGSLIQFGTFDPIIVWSQPEAPGNDFPERTLYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILE

Query:  ENEEHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENV
        E+E   +P  P+ LK+FFP+ F     +IV+CH  + TE+D   S   E   K EDL    I+D LL+++ E K+ +
Subjt:  ENEEHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENV

A0A5D3D1E5 Ribonuclease H1.5e-2338.98Show/hide
Query:  MKARGSLIQFGTFDPIIVWSQPEAPGNDFPERTLYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILE
        + A GSLIQFG+ +P++++S PE    D        +  +E  +Q+++V+ GWTLVTRRK +KQ++ QK+S  ++ ++ K KS+R+N +K  R+  PI+E
Subjt:  MKARGSLIQFGTFDPIIVWSQPEAPGNDFPERTLYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILE

Query:  ENEEHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENV
        E+E   +P  P+ LK+FFP+ F     +IV+CH  + TE+D   S   E   K EDL    I+D LL+++ E K+ +
Subjt:  ENEEHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENV

A0A5D3DZE5 Ty3-gypsy retrotransposon protein5.7e-2337.78Show/hide
Query:  NMLMKARGSLIQFGTFDPIIVWSQPEAPGNDFPERTLYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKP
        N  + A GSLIQFG+ +P++++S PE    D        + L+E  +Q+++V+ GWTLVTRRK  KQ++ QK+S  ++ +  K KS+R+N +K +R+  P
Subjt:  NMLMKARGSLIQFGTFDPIIVWSQPEAPGNDFPERTLYDEDLQENIRQIEDVDGGWTLVTRRKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKP

Query:  ILEENEEHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENV
        I+E++E   +P  P+ LK+FFP+ F     +IV+CH  + TE+D       +   + EDL S  I+D LL+++ E K+ +
Subjt:  ILEENEEHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLSMASEEKENV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCATCCAAGAAAATCCTTTATTTGACTATTCTACTTCATCTTCTGAGCAAGCAAAGGAGACATCAGATCCTGACGTGATGTCTGTAATGATGGCTGACATAGGTAC
AGGCGAAGAAAGAATGGCTGAACTGGAAAGGAAGGTCAACATGCTGATGAAGGCGAGAGGAAGCTTAATCCAATTTGGTACCTTCGATCCTATTATCGTTTGGTCTCAAC
CAGAGGCCCCAGGAAATGACTTCCCAGAAAGGACTCTCTACGATGAGGATCTTCAAGAAAACATTAGGCAAATTGAAGACGTAGATGGAGGCTGGACACTCGTAACCCGA
CGGAAGAACCAAAAGCAAAATTGGGTTCAGAAGAAATCTCGCTTGTTTCAAGAACACAAAAGAAAAAGCAAGTCTCGAAGGAAAAATGGGAAGAAGTATATGAGAAGGCT
CAAGCCTATCTTAGAGGAAAATGAGGAGCATATCCAACCTCCACATCCAGTAACTCTAAAAGAATTCTTCCCAAGAACTTTTCTTGCAGGAATCAATCAAATTGTTACAT
GTCATGTCGTTAATGTGACAGAAGATGATAATGCTACATCGACTACGTCAGAAGCAATCATGAAGCTGGAAGACTTGTCGTCCTTCAATATAGATGATTTACTATTAAGT
ATGGCTTCTGAAGAAAAAGAAAATGTGCATTCAACTCCTACCACACGGCTATCAGCTTTCCAAAGGTTGAGTGTAGCCACAAAAAGAAGTAAAGAACGGTCCCCTATATC
AGTTTCTAACATAACAGAAACTCCAATCAAGACAAAGGGTGATGAGAAAATTCGTAGCGTTGTCCCCTCACGAATGAAGAGAAAATTGCTTGTTTCTGTAAATACAGAGG
GTTTGGCCTCTAATTCCTTTATCTCCAAGGATGATCGTGCAAGCTGTTGTTCGAGTGTGTCATTCAAGGCTTCATTTGTCTCAAAGTACAAGTTCAAGCTTTGCTCGTTT
CAAATTGCAGTTCGAGTTTTCCTCACTTCAAGTACTCTAAGTTCAAGTTCGGGGGCTTCGCTCGTTTCAATTCAAGTTCGAGGCTTCGCTCGTTTCAAGTTCAAGTTCGA
GCATTCCTCACTACAAGTTCTTCAAGTTCCAGGTCCATCTTTGCTCATTTCAAGTTCAAGTTCAAGCTTTCATAACTTCAAGTACTTTAAGTTCAAGTTCGAGGCTTCGC
TCGTTTCAAGTTCAAGTTCGGGCTTTCCTCACTTCAAGTACTCTAAGTTCAAGTTCGGGGGTTTCGATCGTTTCAAGTTCAAGTTCGAGCATTCCTCACTGCAAATACTT
CAAGTTCCAAGTCAATCTTTGCTCATTTCAAGTTCAAGTTCAAGCTTTCATAACTTCAAGTACTTTAAGTTCAAGTTCGAGGCTTCGCTCATTTCAAGTTCAAGTTCGGG
CTTTCCTCACTTCAAGTACTCTAAGTTCAAGTTCGGGGGCTTCGCTTGGTTTCAGTTTGAAGTTTGGAAGCTAAGTAAGGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCATCCAAGAAAATCCTTTATTTGACTATTCTACTTCATCTTCTGAGCAAGCAAAGGAGACATCAGATCCTGACGTGATGTCTGTAATGATGGCTGACATAGGTAC
AGGCGAAGAAAGAATGGCTGAACTGGAAAGGAAGGTCAACATGCTGATGAAGGCGAGAGGAAGCTTAATCCAATTTGGTACCTTCGATCCTATTATCGTTTGGTCTCAAC
CAGAGGCCCCAGGAAATGACTTCCCAGAAAGGACTCTCTACGATGAGGATCTTCAAGAAAACATTAGGCAAATTGAAGACGTAGATGGAGGCTGGACACTCGTAACCCGA
CGGAAGAACCAAAAGCAAAATTGGGTTCAGAAGAAATCTCGCTTGTTTCAAGAACACAAAAGAAAAAGCAAGTCTCGAAGGAAAAATGGGAAGAAGTATATGAGAAGGCT
CAAGCCTATCTTAGAGGAAAATGAGGAGCATATCCAACCTCCACATCCAGTAACTCTAAAAGAATTCTTCCCAAGAACTTTTCTTGCAGGAATCAATCAAATTGTTACAT
GTCATGTCGTTAATGTGACAGAAGATGATAATGCTACATCGACTACGTCAGAAGCAATCATGAAGCTGGAAGACTTGTCGTCCTTCAATATAGATGATTTACTATTAAGT
ATGGCTTCTGAAGAAAAAGAAAATGTGCATTCAACTCCTACCACACGGCTATCAGCTTTCCAAAGGTTGAGTGTAGCCACAAAAAGAAGTAAAGAACGGTCCCCTATATC
AGTTTCTAACATAACAGAAACTCCAATCAAGACAAAGGGTGATGAGAAAATTCGTAGCGTTGTCCCCTCACGAATGAAGAGAAAATTGCTTGTTTCTGTAAATACAGAGG
GTTTGGCCTCTAATTCCTTTATCTCCAAGGATGATCGTGCAAGCTGTTGTTCGAGTGTGTCATTCAAGGCTTCATTTGTCTCAAAGTACAAGTTCAAGCTTTGCTCGTTT
CAAATTGCAGTTCGAGTTTTCCTCACTTCAAGTACTCTAAGTTCAAGTTCGGGGGCTTCGCTCGTTTCAATTCAAGTTCGAGGCTTCGCTCGTTTCAAGTTCAAGTTCGA
GCATTCCTCACTACAAGTTCTTCAAGTTCCAGGTCCATCTTTGCTCATTTCAAGTTCAAGTTCAAGCTTTCATAACTTCAAGTACTTTAAGTTCAAGTTCGAGGCTTCGC
TCGTTTCAAGTTCAAGTTCGGGCTTTCCTCACTTCAAGTACTCTAAGTTCAAGTTCGGGGGTTTCGATCGTTTCAAGTTCAAGTTCGAGCATTCCTCACTGCAAATACTT
CAAGTTCCAAGTCAATCTTTGCTCATTTCAAGTTCAAGTTCAAGCTTTCATAACTTCAAGTACTTTAAGTTCAAGTTCGAGGCTTCGCTCATTTCAAGTTCAAGTTCGGG
CTTTCCTCACTTCAAGTACTCTAAGTTCAAGTTCGGGGGCTTCGCTTGGTTTCAGTTTGAAGTTTGGAAGCTAAGTAAGGGATGA
Protein sequenceShow/hide protein sequence
MVIQENPLFDYSTSSSEQAKETSDPDVMSVMMADIGTGEERMAELERKVNMLMKARGSLIQFGTFDPIIVWSQPEAPGNDFPERTLYDEDLQENIRQIEDVDGGWTLVTR
RKNQKQNWVQKKSRLFQEHKRKSKSRRKNGKKYMRRLKPILEENEEHIQPPHPVTLKEFFPRTFLAGINQIVTCHVVNVTEDDNATSTTSEAIMKLEDLSSFNIDDLLLS
MASEEKENVHSTPTTRLSAFQRLSVATKRSKERSPISVSNITETPIKTKGDEKIRSVVPSRMKRKLLVSVNTEGLASNSFISKDDRASCCSSVSFKASFVSKYKFKLCSF
QIAVRVFLTSSTLSSSSGASLVSIQVRGFARFKFKFEHSSLQVLQVPGPSLLISSSSSSFHNFKYFKFKFEASLVSSSSSGFPHFKYSKFKFGGFDRFKFKFEHSSLQIL
QVPSQSLLISSSSSSFHNFKYFKFKFEASLISSSSSGFPHFKYSKFKFGGFAWFQFEVWKLSKG