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Spg014588 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg014588
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description4-hydroxy-tetrahydrodipicolinate synthase
Genome locationscaffold3:29316445..29325584
RNA-Seq ExpressionSpg014588
SyntenySpg014588
Gene Ontology termsGO:0009089 - lysine biosynthetic process via diaminopimelate (biological process)
GO:0019877 - diaminopimelate biosynthetic process (biological process)
GO:0008840 - 4-hydroxy-tetrahydrodipicolinate synthase (molecular function)
InterPro domainsIPR002220 - DapA-like
IPR013785 - Aldolase-type TIM barrel
IPR020624 - Schiff base-forming aldolase, conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582569.1 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.5e-2985.19Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        TSA+DIKSLRL  VTAIKTPYLPDGRFD+EAYDA+VN QIENGA+ VIVGGTTGEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

OIV98729.1 hypothetical protein TanjilG_24900 [Lupinus angustifolius]2.3e-3060.16Show/hide
Query:  PLAANLWNEALNI--RLGTKNIYDYESVLVCVSDESQNNP----YFWTSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTT
        PL      E +N+   +G K+    + V V   ++   NP      WTS  DIKSLRL  +TAIKTPYLPDGRFD+EAYD ++N QIENGA+GVIVGGTT
Subjt:  PLAANLWNEALNI--RLGTKNIYDYESVLVCVSDESQNNP----YFWTSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTT

Query:  GEGQLMSWDELIMLIGHTVNCFGGLVKL
        GEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  GEGQLMSWDELIMLIGHTVNCFGGLVKL

XP_022147065.1 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic-like [Momordica charantia]8.6e-3086.42Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        TSA+DIKSLRL  VTAIKTPYLPDGRFD+EAYDA+VN QIENGA+GVIVGGTTGEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

XP_023528690.1 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic-like [Cucurbita pepo subsp. pepo]2.5e-2985.19Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        TSA+DIKSLRL  VTAIKTPYLPDGRFD+EAYDA+VN QIENGA+ VIVGGTTGEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

XP_038898920.1 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic-like [Benincasa hispida]8.6e-3086.42Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        TSA+DIKSLRL  VTAIKTPYLPDGRFD+EAYDA+VN QIENGA GVIVGGTTGEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

TrEMBL top hitse value%identityAlignment
A0A2Z7AQI9 4-hydroxy-tetrahydrodipicolinate synthase1.2e-2971.13Show/hide
Query:  LVCVSD-ESQNNPYFWTSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        +V + D ES      WT+ +DIKSLRL  +TAIKTPYLPDGRFD+EAYD +VN QIE G +GVIVGGTTGEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  LVCVSD-ESQNNPYFWTSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

A0A4P1R054 4-hydroxy-tetrahydrodipicolinate synthase1.1e-3060.16Show/hide
Query:  PLAANLWNEALNI--RLGTKNIYDYESVLVCVSDESQNNP----YFWTSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTT
        PL      E +N+   +G K+    + V V   ++   NP      WTS  DIKSLRL  +TAIKTPYLPDGRFD+EAYD ++N QIENGA+GVIVGGTT
Subjt:  PLAANLWNEALNI--RLGTKNIYDYESVLVCVSDESQNNP----YFWTSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTT

Query:  GEGQLMSWDELIMLIGHTVNCFGGLVKL
        GEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  GEGQLMSWDELIMLIGHTVNCFGGLVKL

A0A6J1CZ39 4-hydroxy-tetrahydrodipicolinate synthase4.1e-3086.42Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        TSA+DIKSLRL  VTAIKTPYLPDGRFD+EAYDA+VN QIENGA+GVIVGGTTGEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

A0A6J1E8W7 4-hydroxy-tetrahydrodipicolinate synthase1.2e-2985.19Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        TSA+DIKSLRL  VTAIKTPYLPDGRFD+EAYDA+VN QIENGA+ VIVGGTTGEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

A0A6J1IVZ1 4-hydroxy-tetrahydrodipicolinate synthase1.2e-2985.19Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        TSA+DIKSLRL  VTAIKTPYLPDGRFD+EAYDA+VN QIENGA+ VIVGGTTGEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

SwissProt top hitse value%identityAlignment
P26259 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic2.2e-2874.07Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        TS +DI  LRL  +TA+KTPYLPDGRFD+EAYD+++N QIE GA+GVIVGGTTGEG LMSWDE IMLIGHTVNCFG  +K+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

Q39535 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic5.8e-2975.31Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        TS +DI SLRL  +TA+KTPYLPDGRFD+EAYD+++N QIE GA+GVIVGGTTGEG LMSWDE IMLIGHTVNCFG  +K+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

Q42948 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic4.7e-3181.48Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        T A+DIK+LRL  +TAIKTPYLPDGRFD+EAYD +VN QIENGA+GVIVGGTTGEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

Q9FVC8 4-hydroxy-tetrahydrodipicolinate synthase 2, chloroplastic5.2e-3077.78Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        T+ +DIK+LR+  +TAIKTPYLPDGRFD+EAYD +VN QI+NGA+GVIVGGTTGEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

Q9LZX6 4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic3.1e-3077.78Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        T+ +DI+SLR+  +TAIKTPYLPDGRFD++AYD +VN QIENGA+GVIVGGTTGEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

Arabidopsis top hitse value%identityAlignment
AT2G45440.1 dihydrodipicolinate synthase3.7e-3177.78Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        T+ +DIK+LR+  +TAIKTPYLPDGRFD+EAYD +VN QI+NGA+GVIVGGTTGEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

AT3G60880.1 dihydrodipicolinate synthase 12.2e-3177.78Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        T+ +DI+SLR+  +TAIKTPYLPDGRFD++AYD +VN QIENGA+GVIVGGTTGEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL

AT3G60880.2 dihydrodipicolinate synthase 12.2e-3177.78Show/hide
Query:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL
        T+ +DI+SLR+  +TAIKTPYLPDGRFD++AYD +VN QIENGA+GVIVGGTTGEGQLMSWDE IMLIGHTVNCFGG +K+
Subjt:  TSANDIKSLRLVTVTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAACCGTTGAGGAGCGAAAACTAAGAGTAAAAACTTACCCACTCACCGCCGACCAAAACGCGATCCCCCACCTGCAACCGCCGAAATTGCGAAGCCCTGGGATCGT
CGCCGCTGATCTGCTGAATTGCAAACAACACCACTATGGCTACACCGAAGACTTTGCAAGGAGGATGCACCCGCAAGAGGAGATTAAAGGTAGCGGAGCAAAAGAAGTTA
AAGCTGAAGAATTGTGCCTGCATCTGGACCTGAGGATGTGGGATATGCAATCAAAATGCGCCCGCAAGCCATATAAGGAAAGTAGCCCCATGCTGAAGACAGACTCGTCA
AAGCTGTGTAGAGGAAAAATTGCGTTGGAGATGCGGTCGCAACTGGGCTTTCCGATAAAATACCGAGATTCGCGGGATCTTCACAGATTCGTCCGAAAATCCCCAATCTG
CCGACGACCTTCGCTTCTTCTTCTCCTTCGTGAATCTTCATCAGTCGCCCGTGCCCTGTTGTTCCCGTGTTCAAGCGCCACCGCCTGTGTCCCTGTTGTTCGCATCTCCG
GTGAGCAAACAGTTTCCAGTCGTGACCTCGGAGTGTGCAGACGTGGGCGTGAGAGGAGTAGCGCGCAGGCTGTCTTCAGAGTATTTCCAGCGGTTTTGGTTTTGAGTATG
TATTTTCCAGCAAGCACAATGACAGGAGTGAGACTAAGCTTAGTAGAACCTTCCCTGACTAGACTAAGCTTAGTAGGATCCCTCGATATGTTATGCTCTATAGTCGTACG
TACGGAAAGGGCAAGGCTTAGAATAGGAGCCTTAGATGTGATTCAGGGTCACAGCCAACCCCTTGCGGCAAACTTGTGGAATGAAGCTTTGAACATTAGACTTGGAACAA
AGAATATTTATGATTATGAATCCGTGTTGGTGTGTGTATCCGATGAGTCACAAAATAATCCCTATTTTTGGACATCAGCAAATGATATCAAGTCTCTTAGACTTGTAACT
GTAACTGCCATTAAAACACCATATCTTCCCGATGGTAGATTTGATATAGAAGCTTATGATGCCATGGTGAATGGTCAGATTGAAAATGGAGCTAAAGGTGTGATTGTGGG
TGGCACAACTGGTGAAGGTCAGTTGATGAGCTGGGATGAACTCATAATGCTTATTGGTCACACTGTCAACTGTTTTGGTGGATTAGTCAAGCTTGGATGCATGAATGGTT
TCGACAAGGCTCCCCCTTTTTTGTATGGAAATGTGAAGAACGTAGTGCATGTCTATGTCAGCAACATAGATAGTGTTTCTCAACCGACTGCATTGCCTGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGAACCGTTGAGGAGCGAAAACTAAGAGTAAAAACTTACCCACTCACCGCCGACCAAAACGCGATCCCCCACCTGCAACCGCCGAAATTGCGAAGCCCTGGGATCGT
CGCCGCTGATCTGCTGAATTGCAAACAACACCACTATGGCTACACCGAAGACTTTGCAAGGAGGATGCACCCGCAAGAGGAGATTAAAGGTAGCGGAGCAAAAGAAGTTA
AAGCTGAAGAATTGTGCCTGCATCTGGACCTGAGGATGTGGGATATGCAATCAAAATGCGCCCGCAAGCCATATAAGGAAAGTAGCCCCATGCTGAAGACAGACTCGTCA
AAGCTGTGTAGAGGAAAAATTGCGTTGGAGATGCGGTCGCAACTGGGCTTTCCGATAAAATACCGAGATTCGCGGGATCTTCACAGATTCGTCCGAAAATCCCCAATCTG
CCGACGACCTTCGCTTCTTCTTCTCCTTCGTGAATCTTCATCAGTCGCCCGTGCCCTGTTGTTCCCGTGTTCAAGCGCCACCGCCTGTGTCCCTGTTGTTCGCATCTCCG
GTGAGCAAACAGTTTCCAGTCGTGACCTCGGAGTGTGCAGACGTGGGCGTGAGAGGAGTAGCGCGCAGGCTGTCTTCAGAGTATTTCCAGCGGTTTTGGTTTTGAGTATG
TATTTTCCAGCAAGCACAATGACAGGAGTGAGACTAAGCTTAGTAGAACCTTCCCTGACTAGACTAAGCTTAGTAGGATCCCTCGATATGTTATGCTCTATAGTCGTACG
TACGGAAAGGGCAAGGCTTAGAATAGGAGCCTTAGATGTGATTCAGGGTCACAGCCAACCCCTTGCGGCAAACTTGTGGAATGAAGCTTTGAACATTAGACTTGGAACAA
AGAATATTTATGATTATGAATCCGTGTTGGTGTGTGTATCCGATGAGTCACAAAATAATCCCTATTTTTGGACATCAGCAAATGATATCAAGTCTCTTAGACTTGTAACT
GTAACTGCCATTAAAACACCATATCTTCCCGATGGTAGATTTGATATAGAAGCTTATGATGCCATGGTGAATGGTCAGATTGAAAATGGAGCTAAAGGTGTGATTGTGGG
TGGCACAACTGGTGAAGGTCAGTTGATGAGCTGGGATGAACTCATAATGCTTATTGGTCACACTGTCAACTGTTTTGGTGGATTAGTCAAGCTTGGATGCATGAATGGTT
TCGACAAGGCTCCCCCTTTTTTGTATGGAAATGTGAAGAACGTAGTGCATGTCTATGTCAGCAACATAGATAGTGTTTCTCAACCGACTGCATTGCCTGGGTGA
Protein sequenceShow/hide protein sequence
MRTVEERKLRVKTYPLTADQNAIPHLQPPKLRSPGIVAADLLNCKQHHYGYTEDFARRMHPQEEIKGSGAKEVKAEELCLHLDLRMWDMQSKCARKPYKESSPMLKTDSS
KLCRGKIALEMRSQLGFPIKYRDSRDLHRFVRKSPICRRPSLLLLLRESSSVARALLFPCSSATACVPVVRISGEQTVSSRDLGVCRRGRERSSAQAVFRVFPAVLVLSM
YFPASTMTGVRLSLVEPSLTRLSLVGSLDMLCSIVVRTERARLRIGALDVIQGHSQPLAANLWNEALNIRLGTKNIYDYESVLVCVSDESQNNPYFWTSANDIKSLRLVT
VTAIKTPYLPDGRFDIEAYDAMVNGQIENGAKGVIVGGTTGEGQLMSWDELIMLIGHTVNCFGGLVKLGCMNGFDKAPPFLYGNVKNVVHVYVSNIDSVSQPTALPG