; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg014696 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg014696
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPhotosystem II CP47 reaction center protein
Genome locationscaffold3:49856190..49865527
RNA-Seq ExpressionSpg014696
SyntenySpg014696
Gene Ontology termsGO:0009772 - photosynthetic electron transport in photosystem II (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domainsIPR000932 - Photosystem antenna protein-like
IPR036001 - Photosystem antenna protein-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AGW98230.1 PsbB [Ipomoea tricolor]1.3e-2485.94Show/hide
Query:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE
        M+NGDGI +GWLGHP+FIDKEGRELFVRRMPT FETF VVL DGDGI+RAD PFRRAESKYSVE
Subjt:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE

QUL61240.1 PsbB [Peucedanum chujaense]1.3e-2485.94Show/hide
Query:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE
        M+NGDGI +GWLGHP+FIDKEGRELFVRRMPT FETF VVL DGDGI+RAD PFRRAESKYSVE
Subjt:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE

YP_009376236.1 PSII 47 kDa protein [Linochilus costaricensis]1.3e-2485.94Show/hide
Query:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE
        M+NGDGI +GWLGHP+FIDKEGRELFVRRMPT FETF VVL DGDGI+RAD PFRRAESKYSVE
Subjt:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE

YP_009705077.1 photosystem II CP47 chlorophyll apoprotein [Morina longifolia]1.3e-2485.94Show/hide
Query:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE
        M+NGDGI +GWLGHP+FIDKEGRELFVRRMPT FETF VVL DGDGI+RAD PFRRAESKYSVE
Subjt:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE

YP_009765865.1 photosystem II 47 kDa protein [Julbernardia globiflora]1.3e-2485.94Show/hide
Query:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE
        M+NGDGI +GWLGHP+FIDKEGRELFVRRMPT FETF VVL DGDGI+RAD PFRRAESKYSVE
Subjt:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE

TrEMBL top hitse value%identityAlignment
A0A1W5WJ77 Photosystem II CP47 reaction center protein6.1e-2585.94Show/hide
Query:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE
        M+NGDGI +GWLGHP+FIDKEGRELFVRRMPT FETF VVL DGDGI+RAD PFRRAESKYSVE
Subjt:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE

A0A5P8FVG1 Photosystem II CP47 reaction center protein6.1e-2585.94Show/hide
Query:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE
        M+NGDGI +GWLGHP+FIDKEGRELFVRRMPT FETF VVL DGDGI+RAD PFRRAESKYSVE
Subjt:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE

A0A6H0E4B8 Photosystem II CP47 reaction center protein6.1e-2585.94Show/hide
Query:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE
        M+NGDGI +GWLGHP+FIDKEGRELFVRRMPT FETF VVL DGDGI+RAD PFRRAESKYSVE
Subjt:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE

A0A6M8AVF9 Photosystem II CP47 reaction center protein6.1e-2585.94Show/hide
Query:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE
        M+NGDGI +GWLGHP+FIDKEGRELFVRRMPT FETF VVL DGDGI+RAD PFRRAESKYSVE
Subjt:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE

E0XDT4 Photosystem II CP47 reaction center protein (Fragment)6.1e-2585.94Show/hide
Query:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE
        M+NGDGI +GWLGHP+FIDKEGRELFVRRMPT FETF VVL DGDGI+RAD PFRRAESKYSVE
Subjt:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE

SwissProt top hitse value%identityAlignment
A0A361 Photosystem II CP47 reaction center protein8.2e-2785.94Show/hide
Query:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE
        M+NGDGI IGWLGHP+F DKEGRELFVRRMPT FETF VVL DGDGI+RAD PFRRAESKYSVE
Subjt:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE

A9L9C2 Photosystem II CP47 reaction center protein6.3e-2787.5Show/hide
Query:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE
        M+NGDGI IGWLGHPVF DKEGRELFVRRMPT FETF VVL DGDGI+RAD PFRRAESKYSVE
Subjt:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE

A9LYC6 Photosystem II CP47 reaction center protein8.2e-2785.94Show/hide
Query:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE
        M+NGDGI +GWLGHPVF DKEGRELFVRRMPT FETF VVL DGDGI+RAD PFRRAESKYSVE
Subjt:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE

Q2QD63 Photosystem II CP47 reaction center protein8.2e-2785.94Show/hide
Query:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE
        M+NGDGI +GWLGHPVF DKEGRELFVRRMPT FETF VVL DGDGI+RAD PFRRAESKYSVE
Subjt:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE

Q3V508 Photosystem II CP47 reaction center protein8.2e-2785.94Show/hide
Query:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE
        M+NGDGI +GWLGHPVF DKEGRELFVRRMPT FETF VVL DGDGI+RAD PFRRAESKYSVE
Subjt:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE

Arabidopsis top hitse value%identityAlignment
AT1G15750.1 Transducin family protein / WD-40 repeat family protein2.1e-0956.9Show/hide
Query:  VNLPVNVLPVSFAD--HGHV--------LPKAVMRTPNQGSSPMCMDIHPVQQTLLLI
        VNL VN+LP+SF+   HGH         LPK V RT +QGSSPM MD HP++QTLLL+
Subjt:  VNLPVNVLPVSFAD--HGHV--------LPKAVMRTPNQGSSPMCMDIHPVQQTLLLI

AT1G15750.1 Transducin family protein / WD-40 repeat family protein7.0e-0584.62Show/hide
Query:  ISMLIYTNSGSAILALASNAFHLLWK
        IS LI+TNSG+AILALASNA HLLWK
Subjt:  ISMLIYTNSGSAILALASNAFHLLWK

AT1G15750.2 Transducin family protein / WD-40 repeat family protein2.1e-0956.9Show/hide
Query:  VNLPVNVLPVSFAD--HGHV--------LPKAVMRTPNQGSSPMCMDIHPVQQTLLLI
        VNL VN+LP+SF+   HGH         LPK V RT +QGSSPM MD HP++QTLLL+
Subjt:  VNLPVNVLPVSFAD--HGHV--------LPKAVMRTPNQGSSPMCMDIHPVQQTLLLI

AT1G15750.2 Transducin family protein / WD-40 repeat family protein7.0e-0584.62Show/hide
Query:  ISMLIYTNSGSAILALASNAFHLLWK
        IS LI+TNSG+AILALASNA HLLWK
Subjt:  ISMLIYTNSGSAILALASNAFHLLWK

AT1G15750.3 Transducin family protein / WD-40 repeat family protein2.1e-0956.9Show/hide
Query:  VNLPVNVLPVSFAD--HGHV--------LPKAVMRTPNQGSSPMCMDIHPVQQTLLLI
        VNL VN+LP+SF+   HGH         LPK V RT +QGSSPM MD HP++QTLLL+
Subjt:  VNLPVNVLPVSFAD--HGHV--------LPKAVMRTPNQGSSPMCMDIHPVQQTLLLI

AT1G15750.3 Transducin family protein / WD-40 repeat family protein7.0e-0584.62Show/hide
Query:  ISMLIYTNSGSAILALASNAFHLLWK
        IS LI+TNSG+AILALASNA HLLWK
Subjt:  ISMLIYTNSGSAILALASNAFHLLWK

AT1G15750.4 Transducin family protein / WD-40 repeat family protein2.1e-0956.9Show/hide
Query:  VNLPVNVLPVSFAD--HGHV--------LPKAVMRTPNQGSSPMCMDIHPVQQTLLLI
        VNL VN+LP+SF+   HGH         LPK V RT +QGSSPM MD HP++QTLLL+
Subjt:  VNLPVNVLPVSFAD--HGHV--------LPKAVMRTPNQGSSPMCMDIHPVQQTLLLI

AT1G15750.4 Transducin family protein / WD-40 repeat family protein7.0e-0584.62Show/hide
Query:  ISMLIYTNSGSAILALASNAFHLLWK
        IS LI+TNSG+AILALASNA HLLWK
Subjt:  ISMLIYTNSGSAILALASNAFHLLWK

ATCG00680.1 photosystem II reaction center protein B2.2e-2784.38Show/hide
Query:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE
        M+NGDGI +GWLGHPVF +KEGRELFVRRMPT FETF VVL DGDGI+RAD PFRRAESKYSVE
Subjt:  MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAACGGGGATGGAATAGTTATTGGGTGGTTGGGACACCCTGTTTTTATAGATAAAGAAGGGCGCGAACTTTTTGTACGTCGTATGCCGACCATTTTTGAAACATT
TACGGTTGTTTTAGCAGACGGAGACGGAATTCTTAGAGCTGATTTTCCTTTTCGAAGAGCAGAATCGAAGTATAGTGTTGAACTGGAGAATTATTACAGGCTGGACAGGA
TTTTACGTAGCTACCAGTCAAGGATATACACTGATGATGTTGGAGCTTCTTTAAGGCGCTCGCTAGGGGTGAGCATCATAGACCGAAAAATCGATCCGCTCGAATCAACA
TCGCACGCGTTTGCATCGGGTTACCAGACTTCTGTTTCGATTAAGCCCGAGTGTTTGGGCTGGTCTTTCCTGTACCTTGGGAGCCGACTTTGTAAAATAGGATTGTGGGA
AGTTGGAGCCTTGATGGTGCATTGTCTGGTAAATCTACCGGTTAATGTTCTGCCCGTATCATTTGCTGATCATGGTCATGTTTTGCCAAAGGCTGTTATGCGAACACCGA
ATCAAGGGTCATCTCCAATGTGCATGGATATTCATCCAGTCCAACAAACTCTGCTATTGATATCTATGTTGATCTACACAAATTCTGGAAGTGCAATCTTGGCATTGGCA
TCAAATGCATTTCACCTGCTATGGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAACAACGGGGATGGAATAGTTATTGGGTGGTTGGGACACCCTGTTTTTATAGATAAAGAAGGGCGCGAACTTTTTGTACGTCGTATGCCGACCATTTTTGAAACATT
TACGGTTGTTTTAGCAGACGGAGACGGAATTCTTAGAGCTGATTTTCCTTTTCGAAGAGCAGAATCGAAGTATAGTGTTGAACTGGAGAATTATTACAGGCTGGACAGGA
TTTTACGTAGCTACCAGTCAAGGATATACACTGATGATGTTGGAGCTTCTTTAAGGCGCTCGCTAGGGGTGAGCATCATAGACCGAAAAATCGATCCGCTCGAATCAACA
TCGCACGCGTTTGCATCGGGTTACCAGACTTCTGTTTCGATTAAGCCCGAGTGTTTGGGCTGGTCTTTCCTGTACCTTGGGAGCCGACTTTGTAAAATAGGATTGTGGGA
AGTTGGAGCCTTGATGGTGCATTGTCTGGTAAATCTACCGGTTAATGTTCTGCCCGTATCATTTGCTGATCATGGTCATGTTTTGCCAAAGGCTGTTATGCGAACACCGA
ATCAAGGGTCATCTCCAATGTGCATGGATATTCATCCAGTCCAACAAACTCTGCTATTGATATCTATGTTGATCTACACAAATTCTGGAAGTGCAATCTTGGCATTGGCA
TCAAATGCATTTCACCTGCTATGGAAATAG
Protein sequenceShow/hide protein sequence
MNNGDGIVIGWLGHPVFIDKEGRELFVRRMPTIFETFTVVLADGDGILRADFPFRRAESKYSVELENYYRLDRILRSYQSRIYTDDVGASLRRSLGVSIIDRKIDPLEST
SHAFASGYQTSVSIKPECLGWSFLYLGSRLCKIGLWEVGALMVHCLVNLPVNVLPVSFADHGHVLPKAVMRTPNQGSSPMCMDIHPVQQTLLLISMLIYTNSGSAILALA
SNAFHLLWK