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Spg014783 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg014783
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold3:29304009..29306417
RNA-Seq ExpressionSpg014783
SyntenySpg014783
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]4.8e-1150Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSKSTSSSMIQQGQQV----------SLEEDDVCWLHAISLTKLAGHQG
        MTEILSPRLYGTVCTQ                 VEIEL VPDTLPTSAESS+S SS+ ++   +            + EDDVCWLHA+   K AG  G
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSKSTSSSMIQQGQQV----------SLEEDDVCWLHAISLTKLAGHQG

TYK00848.1 gag/pol protein [Cucumis melo var. makuwa]2.4e-1053.61Show/hide
Query:  FSETFIDYMTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSKSTS-SSMIQQGQQVSLEEDDVCWLHAISLTKLAGHQG
        F+E  I YMTEILS RLYG VCTQ                 VEIEL VPDTLPTSAES +S S S+ I +G       DDVCWLHAI   K AG  G
Subjt:  FSETFIDYMTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSKSTS-SSMIQQGQQVSLEEDDVCWLHAISLTKLAGHQG

TYK01784.1 hypothetical protein E5676_scaffold113G00120 [Cucumis melo var. makuwa]2.4e-1052.69Show/hide
Query:  IDYMTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSKSTSSSM-IQQGQQVSLEEDDVCWLHAISLTKLAGHQGL
        IDY+TEILS RLYGTVCTQ                 VEIEL VPDTLPTSAESS+S S S+ I +G       DDVCWLH +   K  G  G+
Subjt:  IDYMTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSKSTSSSM-IQQGQQVSLEEDDVCWLHAISLTKLAGHQGL

TYK11693.1 gag protease polyprotein [Cucumis melo var. makuwa]1.4e-1054.95Show/hide
Query:  FSETFIDYMTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSKSTS-SSMIQQGQQVSLEEDDVCWLHAISLTK
        F+E  IDY+TEILS RLYGTVCTQ                 VEIEL VPDTLPTSAESSKS S S+ I +G       DDVCWLH +   K
Subjt:  FSETFIDYMTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSKSTS-SSMIQQGQQVSLEEDDVCWLHAISLTK

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]4.8e-1150Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSKSTSSSMIQQGQQV----------SLEEDDVCWLHAISLTKLAGHQG
        MTEILSPRLYGTVCTQ                 VEIEL VPDTLPTSAESS+S SS+ ++   +            + EDDVCWLHA+   K AG  G
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSKSTSSSMIQQGQQV----------SLEEDDVCWLHAISLTKLAGHQG

TrEMBL top hitse value%identityAlignment
A0A5A7UCL6 Reverse transcriptase domain-containing protein1.2e-1052.69Show/hide
Query:  IDYMTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSKSTSSSM-IQQGQQVSLEEDDVCWLHAISLTKLAGHQGL
        IDY+TEILS RLYGTVCTQ                 VEIEL VPDTLPTSAESS+S S S+ I +G       DDVCWLH +   K  G  G+
Subjt:  IDYMTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSKSTSSSM-IQQGQQVSLEEDDVCWLHAISLTKLAGHQGL

A0A5A7VMG9 Reverse transcriptase2.3e-1150Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSKSTSSSMIQQGQQV----------SLEEDDVCWLHAISLTKLAGHQG
        MTEILSPRLYGTVCTQ                 VEIEL VPDTLPTSAESS+S SS+ ++   +            + EDDVCWLHA+   K AG  G
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSKSTSSSMIQQGQQV----------SLEEDDVCWLHAISLTKLAGHQG

A0A5D3BRJ2 Reverse transcriptase domain-containing protein1.2e-1052.69Show/hide
Query:  IDYMTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSKSTSSSM-IQQGQQVSLEEDDVCWLHAISLTKLAGHQGL
        IDY+TEILS RLYGTVCTQ                 VEIEL VPDTLPTSAESS+S S S+ I +G       DDVCWLH +   K  G  G+
Subjt:  IDYMTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSKSTSSSM-IQQGQQVSLEEDDVCWLHAISLTKLAGHQGL

A0A5D3CIF4 Gag protease polyprotein6.8e-1154.95Show/hide
Query:  FSETFIDYMTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSKSTS-SSMIQQGQQVSLEEDDVCWLHAISLTK
        F+E  IDY+TEILS RLYGTVCTQ                 VEIEL VPDTLPTSAESSKS S S+ I +G       DDVCWLH +   K
Subjt:  FSETFIDYMTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSKSTS-SSMIQQGQQVSLEEDDVCWLHAISLTK

A0A5D3DX39 Reverse transcriptase2.3e-1150Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSKSTSSSMIQQGQQV----------SLEEDDVCWLHAISLTKLAGHQG
        MTEILSPRLYGTVCTQ                 VEIEL VPDTLPTSAESS+S SS+ ++   +            + EDDVCWLHA+   K AG  G
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELSVPDTLPTSAESSKSTSSSMIQQGQQV----------SLEEDDVCWLHAISLTKLAGHQG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAATCTGGAGCTAAATCTGAAGATAAGTTAATGGTTTTTGAAATGGAAAACAGAGCACAGAATTTTCGTGCAAACCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGC
ATTCTGGGGTGTACAAGTTGAATCCGAAGCTCCCTTTGATAAAGATAAGCAGGAATGTTTTAATGTTTTCTTGTGGTTTTCTGAGACTTTTATCGACTACATGACTGAGA
TATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCTCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAAGTCGACTTCCAGTTCA
ATGATTCAGCAAGGTCAACAGGTGTCGTTAGAGGAGGACGATGTCTGTTGGCTTCATGCCATCTCCCTGACTAAGCTAGCAGGCCATCAAGGGTTAAACCCGGATATGGG
TCCCTGTAGTAGATGTGTGAAAGCTAGTGCCTTTAGAAAAATGCAAGTTTTGGAGACACCCCAAGAAATTGGGCACCTCAGTAAGGTAGTGGTTGTAGATAAGTGA
mRNA sequenceShow/hide mRNA sequence
GAATCTGGAGCTAAATCTGAAGATAAGTTAATGGTTTTTGAAATGGAAAACAGAGCACAGAATTTTCGTGCAAACCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGC
ATTCTGGGGTGTACAAGTTGAATCCGAAGCTCCCTTTGATAAAGATAAGCAGGAATGTTTTAATGTTTTCTTGTGGTTTTCTGAGACTTTTATCGACTACATGACTGAGA
TATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCTCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAAGTCGACTTCCAGTTCA
ATGATTCAGCAAGGTCAACAGGTGTCGTTAGAGGAGGACGATGTCTGTTGGCTTCATGCCATCTCCCTGACTAAGCTAGCAGGCCATCAAGGGTTAAACCCGGATATGGG
TCCCTGTAGTAGATGTGTGAAAGCTAGTGCCTTTAGAAAAATGCAAGTTTTGGAGACACCCCAAGAAATTGGGCACCTCAGTAAGGTAGTGGTTGTAGATAAGTGA
Protein sequenceShow/hide protein sequence
ESGAKSEDKLMVFEMENRAQNFRANQEDLWFSLVFRAFWGVQVESEAPFDKDKQECFNVFLWFSETFIDYMTEILSPRLYGTVCTQVEIELSVPDTLPTSAESSKSTSSS
MIQQGQQVSLEEDDVCWLHAISLTKLAGHQGLNPDMGPCSRCVKASAFRKMQVLETPQEIGHLSKVVVVDK