CuGenDBv2

Gene ID	Spg014830
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	LOW QUALITY PROTEIN: uncharacterized protein At4g13200, chloroplastic
Genome location	scaffold3:40535940..40539991
RNA-Seq Expression	Spg014830
Synteny	Spg014830
Gene Ontology terms	GO:0010027 - thylakoid membrane organization (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component)
InterPro domains	IPR040003 - Plastoglobular protein 18-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004139667.1 uncharacterized protein At4g13200, chloroplastic [Cucumis sativus]

9.3e-62

68.37

Show/hide

Query:  MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        MSSGVT SVS SPFSL+ T+PKITH S PS LLF SSSTPSNL+FRGISHF+PNG  RF+ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVL 
Subjt:  MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  GIGRLQAERQKQILDFQVGCSKISDKRVGHLMLQRLHGLIWWSIRVKEEVIERAKKAKDKAARDAKEVQGPISSS-IWPTIEVTSSPTTSTDRKQASNPD
        GIGRLQAE+QKQI DFQ                              +EVIERAKKAK+KAARD+KEVQGP+SSS I P IEV SSPT       +S+PD
Subjt:  GIGRLQAERQKQILDFQVGCSKISDKRVGHLMLQRLHGLIWWSIRVKEEVIERAKKAKDKAARDAKEVQGPISSS-IWPTIEVTSSPTTSTDRKQASNPD

Query:  PDSETVVNQDPPLGD
         DSE+VVNQDP LG+
Subjt:  PDSETVVNQDPPLGD

XP_008447268.1 PREDICTED: uncharacterized protein At4g13200, chloroplastic isoform X1 [Cucumis melo]

8.7e-60

66.98

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Query:  MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        MSS +T SVS SPFSL+ T+PKITH SSPS L F SSSTPSNL+FRGISHF+PNGS R +ARCSSGDGDSRT+LDAFFLGKALAEALTERIESTIGEVL 
Subjt:  MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  GIGRLQAERQKQILDFQVGCSKISDKRVGHLMLQRLHGLIWWSIRVKEEVIERAKKAKDKAARDAKEVQGPISSS-IWPTIEVTSSPTTSTDRKQASNPD
        GIG+LQAE+QKQI DFQ                              +EVIERAKKAK+KAAR+AKEVQ P+SSS I PTIEV+SSPT       +S+PD
Subjt:  GIGRLQAERQKQILDFQVGCSKISDKRVGHLMLQRLHGLIWWSIRVKEEVIERAKKAKDKAARDAKEVQGPISSS-IWPTIEVTSSPTTSTDRKQASNPD

Query:  PDSETVVNQDPPLGD
         DSE+ VNQDPPLGD
Subjt:  PDSETVVNQDPPLGD

XP_023005089.1 uncharacterized protein At4g13200, chloroplastic-like [Cucurbita maxima]

2.2e-55

64.38

Show/hide

Query:  MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        M+SGVTPSVSPS FS+L+++PKITH SS           PSNL+FR IS   P GSPRFV RCSSGD DSRTVL+AFFLGKALAEALTER+ESTIGEVL 
Subjt:  MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  GIGRLQAERQKQILDFQVGCSKISDKRVGHLMLQRLHGLIWWSIRVKEEVIERAKKAKDKAARDAKEVQGPISSSI---WPTIEVTSSPTTSTDRKQASN
        GIGRLQAE+QKQILDFQ                              EEVIERAKKA++KAARDAKEVQGPISSS     PTIEV SS TTST+++Q SN
Subjt:  GIGRLQAERQKQILDFQVGCSKISDKRVGHLMLQRLHGLIWWSIRVKEEVIERAKKAKDKAARDAKEVQGPISSSI---WPTIEVTSSPTTSTDRKQASN

Query:  PDPDSETVVNQDPPLGDEE
        P  DS T  NQDPPLGDEE
Subjt:  PDPDSETVVNQDPPLGDEE

XP_023514675.1 uncharacterized protein At4g13200, chloroplastic-like [Cucurbita pepo subsp. pepo]

1.1e-54

63.93

Show/hide

Query:  MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        M+SGVTPSVSPS FS+L+++PKITH SS           PSNL+FR IS   P GSPRFV RCSSGDGDSRTVL+AFFLGKALAEALTER+ESTIGEVL 
Subjt:  MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  GIGRLQAERQKQILDFQVGCSKISDKRVGHLMLQRLHGLIWWSIRVKEEVIERAKKAKDKAARDAKEVQGPISSSI---WPTIEVTSSPTTSTDRKQASN
        GIGRLQAE+QKQILDFQ                              EEVIERAKKA++KAARDAKEVQGPISSS     PTIEV SS T+ST+++Q SN
Subjt:  GIGRLQAERQKQILDFQVGCSKISDKRVGHLMLQRLHGLIWWSIRVKEEVIERAKKAKDKAARDAKEVQGPISSSI---WPTIEVTSSPTTSTDRKQASN

Query:  PDPDSETVVNQDPPLGDEE
        P  DS T  NQDPPLG EE
Subjt:  PDPDSETVVNQDPPLGDEE

XP_038900031.1 uncharacterized protein At4g13200, chloroplastic [Benincasa hispida]

2.2e-71

74.19

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Query:  MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        MSSGVT SVS SPFSL+ T+PKITH SS S LLF SSSTPSNL+FR ISHF+PNGSPRF+ARCSSGDGDSRTVLDAFFLGKALAEALTERIEST+GEVL 
Subjt:  MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  GIGRLQAERQKQILDFQVGCSKISDKRVGHLMLQRLHGLIWWSIRVKEEVIERAKKAKDKAARDAKEVQGPISSSIW-PTIEVTSSPTTSTDRKQASNPD
        GIGRLQAE+QKQI DFQ                              EEVIERAKKAKDKAARDAKEVQGP+SSSI  PTIEVTSSPT ST+R+Q SNPD
Subjt:  GIGRLQAERQKQILDFQVGCSKISDKRVGHLMLQRLHGLIWWSIRVKEEVIERAKKAKDKAARDAKEVQGPISSSIW-PTIEVTSSPTTSTDRKQASNPD

Query:  PDSETVVNQDPPLGDEE
         DSETVVNQDPPLGD+E
Subjt:  PDSETVVNQDPPLGDEE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K6Q2 Uncharacterized protein

4.5e-62

68.37

Show/hide

Query:  MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        MSSGVT SVS SPFSL+ T+PKITH S PS LLF SSSTPSNL+FRGISHF+PNG  RF+ARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVL 
Subjt:  MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  GIGRLQAERQKQILDFQVGCSKISDKRVGHLMLQRLHGLIWWSIRVKEEVIERAKKAKDKAARDAKEVQGPISSS-IWPTIEVTSSPTTSTDRKQASNPD
        GIGRLQAE+QKQI DFQ                              +EVIERAKKAK+KAARD+KEVQGP+SSS I P IEV SSPT       +S+PD
Subjt:  GIGRLQAERQKQILDFQVGCSKISDKRVGHLMLQRLHGLIWWSIRVKEEVIERAKKAKDKAARDAKEVQGPISSS-IWPTIEVTSSPTTSTDRKQASNPD

Query:  PDSETVVNQDPPLGD
         DSE+VVNQDP LG+
Subjt:  PDSETVVNQDPPLGD

A0A1S3BHX5 uncharacterized protein At4g13200, chloroplastic isoform X1

4.2e-60

66.98

Show/hide

Query:  MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        MSS +T SVS SPFSL+ T+PKITH SSPS L F SSSTPSNL+FRGISHF+PNGS R +ARCSSGDGDSRT+LDAFFLGKALAEALTERIESTIGEVL 
Subjt:  MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  GIGRLQAERQKQILDFQVGCSKISDKRVGHLMLQRLHGLIWWSIRVKEEVIERAKKAKDKAARDAKEVQGPISSS-IWPTIEVTSSPTTSTDRKQASNPD
        GIG+LQAE+QKQI DFQ                              +EVIERAKKAK+KAAR+AKEVQ P+SSS I PTIEV+SSPT       +S+PD
Subjt:  GIGRLQAERQKQILDFQVGCSKISDKRVGHLMLQRLHGLIWWSIRVKEEVIERAKKAKDKAARDAKEVQGPISSS-IWPTIEVTSSPTTSTDRKQASNPD

Query:  PDSETVVNQDPPLGD
         DSE+ VNQDPPLGD
Subjt:  PDSETVVNQDPPLGD

A0A6J1GNZ1 uncharacterized protein At4g13200, chloroplastic-like

9.1e-55

62.67

Show/hide

Query:  MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        MSSGV  SVS S FS++ T+ KITHCSSPS + F SSST SNL+      FRPNGS RF+A CSSGDGD+RTVLDAFF+GKA AE LTER+EST+GEVLG
Subjt:  MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  GIGRLQAERQKQILDFQVGCSKISDKRVGHLMLQRLHGLIWWSIRVKEEVIERAKKAKDKAARDAKEVQGPISSS-IWPTIEVTSSPTTSTDRKQASNPD
         IGRLQAERQ+QI+DFQ                              EEVI+RAKKAK+KA RDAKE QGPISSS I  TIEVTSSPT S++ +Q S+P+
Subjt:  GIGRLQAERQKQILDFQVGCSKISDKRVGHLMLQRLHGLIWWSIRVKEEVIERAKKAKDKAARDAKEVQGPISSS-IWPTIEVTSSPTTSTDRKQASNPD

Query:  PDSETVVNQDPPLGDEE
          SETVVNQDPP GDEE
Subjt:  PDSETVVNQDPPLGDEE

A0A6J1JX27 uncharacterized protein At4g13200, chloroplastic-like

1.2e-54

63.59

Show/hide

Query:  MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        MSSGV  SVSPS FS+L T+ KITHCSSPS + F SSST SNL+      FRPNGS RF+A CSSGDGD+RTVLDAFFLGKA AE LTER+EST+GEVL 
Subjt:  MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  GIGRLQAERQKQILDFQVGCSKISDKRVGHLMLQRLHGLIWWSIRVKEEVIERAKKAKDKAARDAKEVQGPISSSIW-PTIEVTSSPTTSTDRKQASNPD
         IGRLQAERQ+QI+DFQ                              EEVIERAKKAK+KA RDAKE QGPISSSI   TIEVTSSPT S++ +Q S+ +
Subjt:  GIGRLQAERQKQILDFQVGCSKISDKRVGHLMLQRLHGLIWWSIRVKEEVIERAKKAKDKAARDAKEVQGPISSSIW-PTIEVTSSPTTSTDRKQASNPD

Query:  PDSETVVNQDPPLGDEE
          SETVVNQDPP GDEE
Subjt:  PDSETVVNQDPPLGDEE

A0A6J1KY61 uncharacterized protein At4g13200, chloroplastic-like

1.1e-55

64.38

Show/hide

Query:  MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG
        M+SGVTPSVSPS FS+L+++PKITH SS           PSNL+FR IS   P GSPRFV RCSSGD DSRTVL+AFFLGKALAEALTER+ESTIGEVL 
Subjt:  MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLG

Query:  GIGRLQAERQKQILDFQVGCSKISDKRVGHLMLQRLHGLIWWSIRVKEEVIERAKKAKDKAARDAKEVQGPISSSI---WPTIEVTSSPTTSTDRKQASN
        GIGRLQAE+QKQILDFQ                              EEVIERAKKA++KAARDAKEVQGPISSS     PTIEV SS TTST+++Q SN
Subjt:  GIGRLQAERQKQILDFQVGCSKISDKRVGHLMLQRLHGLIWWSIRVKEEVIERAKKAKDKAARDAKEVQGPISSSI---WPTIEVTSSPTTSTDRKQASN

Query:  PDPDSETVVNQDPPLGDEE
        P  DS T  NQDPPLGDEE
Subjt:  PDPDSETVVNQDPPLGDEE

SwissProt top hits

e value

%identity

Alignment

Q8LDV3 Uncharacterized protein At4g13200, chloroplastic

1.2e-16

36.28

Show/hide

Query:  MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFR----GISHFRPNGSPRFVARCS-----SGDGDSRTVLDAFFLGKALAEALTERI
        MSS   P  SPS FSL N+  +    +SP    F   ++ SN  F      +   R + S R  + CS     SG+ ++++VLDAFFLGKALAE + ERI
Subjt:  MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFR----GISHFRPNGSPRFVARCS-----SGDGDSRTVLDAFFLGKALAEALTERI

Query:  ESTIGEVLGGIGRLQAERQKQILDFQVGCSKISDKRVGHLMLQRLHGLIWWSIRVKEEVIERAKKAKDKAARDAKEVQGPISSSIWPTIEVTSSPTTSTD
        EST+GEVL  IG+ QAE+QKQ+ + Q                              EEV+ERAKKAK++AAR+  E QG ++S     + +T +P     
Subjt:  ESTIGEVLGGIGRLQAERQKQILDFQVGCSKISDKRVGHLMLQRLHGLIWWSIRVKEEVIERAKKAKDKAARDAKEVQGPISSSIWPTIEVTSSPTTSTD

Query:  RKQASNPDPDSETVV
            S    +S+T++
Subjt:  RKQASNPDPDSETVV

Arabidopsis top hits

e value

%identity

Alignment

AT4G13200.1 unknown protein

8.8e-18

36.28

Show/hide

Query:  MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFR----GISHFRPNGSPRFVARCS-----SGDGDSRTVLDAFFLGKALAEALTERI
        MSS   P  SPS FSL N+  +    +SP    F   ++ SN  F      +   R + S R  + CS     SG+ ++++VLDAFFLGKALAE + ERI
Subjt:  MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFR----GISHFRPNGSPRFVARCS-----SGDGDSRTVLDAFFLGKALAEALTERI

Query:  ESTIGEVLGGIGRLQAERQKQILDFQVGCSKISDKRVGHLMLQRLHGLIWWSIRVKEEVIERAKKAKDKAARDAKEVQGPISSSIWPTIEVTSSPTTSTD
        EST+GEVL  IG+ QAE+QKQ+ + Q                              EEV+ERAKKAK++AAR+  E QG ++S     + +T +P     
Subjt:  ESTIGEVLGGIGRLQAERQKQILDFQVGCSKISDKRVGHLMLQRLHGLIWWSIRVKEEVIERAKKAKDKAARDAKEVQGPISSSIWPTIEVTSSPTTSTD

Query:  RKQASNPDPDSETVV
            S    +S+T++
Subjt:  RKQASNPDPDSETVV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAGTAGTGGGGTTACACCTTCGGTTTCCCCATCCCCTTTCTCTCTTCTGAACACACAACCAAAAATTACCCATTGTTCATCTCCATCTCAACTTCTATTTTGTTCCTC
TTCCACTCCCTCAAATCTCAGGTTTCGAGGAATTTCACATTTTCGACCAAATGGGTCTCCCAGATTCGTTGCTCGTTGCAGCTCCGGTGATGGTGACAGCAGGACTGTTC
TAGATGCCTTTTTCTTAGGAAAAGCTTTAGCAGAAGCCTTAACTGAGCGTATCGAGTCAACAATTGGAGAGGTCTTAGGCGGGATTGGTAGGCTGCAAGCTGAACGACAA
AAACAAATTCTTGATTTCCAGGTAGGATGCTCAAAAATTAGTGATAAAAGGGTTGGCCACCTAATGTTGCAAAGATTACATGGGTTGATATGGTGGTCAATAAGAGTCAA
GGAGGAGGTGATAGAAAGAGCCAAAAAAGCCAAGGACAAAGCAGCACGTGATGCTAAAGAAGTACAAGGACCCATCTCCTCTTCAATATGGCCTACGATCGAAGTTACTT
CATCTCCAACTACTTCGACCGATCGAAAACAAGCCTCGAACCCCGACCCAGATTCCGAAACTGTTGTGAACCAGGATCCTCCTCTTGGTGACGAAGAGTAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MSSGVTPSVSPSPFSLLNTQPKITHCSSPSQLLFCSSSTPSNLRFRGISHFRPNGSPRFVARCSSGDGDSRTVLDAFFLGKALAEALTERIESTIGEVLGGIGRLQAERQ
KQILDFQVGCSKISDKRVGHLMLQRLHGLIWWSIRVKEEVIERAKKAKDKAARDAKEVQGPISSSIWPTIEVTSSPTTSTDRKQASNPDPDSETVVNQDPPLGDEE

Spg014830 (gene) of Sponge gourd (cylindrica) v1 genome