; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg014835 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg014835
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionHistone H3
Genome locationscaffold3:36462679..36466154
RNA-Seq ExpressionSpg014835
SyntenySpg014835
Gene Ontology termsGO:0000786 - nucleosome (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR000164 - Histone H3/CENP-A
IPR007125 - Histone H2A/H2B/H3
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008462109.1 PREDICTED: histone H3-like centromeric protein HTR12, partial [Cucumis melo]7.3e-3659.74Show/hide
Query:  KKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTMLCAIHAK
        K++ RF+PGTVALREIR+LQKSWNLLIPASCFIRAV+EVS QLAPQI RWQAEAL+ALQE                   AAED+LVHLFEDTMLCAIHAK
Subjt:  KKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTMLCAIHAK

Query:  RVTIKPNTPRPYSLVIFPVVPIDPLNVIHFLCSFYAVKKDFELARRLGGKGRPW
        RVTI                                +KKDFELARRLGGKGRPW
Subjt:  RVTIKPNTPRPYSLVIFPVVPIDPLNVIHFLCSFYAVKKDFELARRLGGKGRPW

XP_011659153.1 histone H3-like centromeric protein HTR12 isoform X2 [Cucumis sativus]1.1e-3658.13Show/hide
Query:  TSRKIGKKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTML
        +S +  KK++RF+PGTVAL+EIR+LQKSWNLLIPASCFIRAV+EVS QLAPQI RWQAEAL+ALQE                   AAED+LVHLFEDTML
Subjt:  TSRKIGKKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTML

Query:  CAIHAKRVTIKPNTPRPYSLVIFPVVPIDPLNVIHFLCSFYAVKKDFELARRLGGKGRPW
        CAIHAKRVTI                                +KKDFELARRLGGKGRPW
Subjt:  CAIHAKRVTIKPNTPRPYSLVIFPVVPIDPLNVIHFLCSFYAVKKDFELARRLGGKGRPW

XP_022156549.1 histone H3-like centromeric protein HTR12 [Momordica charantia]3.3e-3658.39Show/hide
Query:  PTSRKIGKKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTM
        P +R  GKK RRF+PGTVALREIR  QK+WNLLIPAS FIRAV+EVSYQLAP+I RWQAEAL+ALQE                   AAED+LVHLFEDTM
Subjt:  PTSRKIGKKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTM

Query:  LCAIHAKRVTIKPNTPRPYSLVIFPVVPIDPLNVIHFLCSFYAVKKDFELARRLGGKGRPW
        LCAIHAKRVTI                                +KKDFELARRLGGKGRPW
Subjt:  LCAIHAKRVTIKPNTPRPYSLVIFPVVPIDPLNVIHFLCSFYAVKKDFELARRLGGKGRPW

XP_022959605.1 histone H3-like centromeric protein HTR12 [Cucurbita moschata]1.7e-3760.25Show/hide
Query:  PTSRKIGKKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTM
        P SR  GKK RRF+PGTVALREIR LQKSWNLLIPAS FIRAV+EVSYQLAPQ+ RWQAEAL+ALQE                   AAED+LVHLFEDTM
Subjt:  PTSRKIGKKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTM

Query:  LCAIHAKRVTIKPNTPRPYSLVIFPVVPIDPLNVIHFLCSFYAVKKDFELARRLGGKGRPW
        LCAIHAKRVTI                                +KKDFELARRLGGKGRPW
Subjt:  LCAIHAKRVTIKPNTPRPYSLVIFPVVPIDPLNVIHFLCSFYAVKKDFELARRLGGKGRPW

XP_038896752.1 histone H3-like centromeric protein HTR12 [Benincasa hispida]1.0e-3761.04Show/hide
Query:  KKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTMLCAIHAK
        KK++RF+PGTVALREIR LQKSWNLLIPASCFIRAV+EVSYQLAPQI RWQAEAL+ALQE                   AAED+LVHLFEDTMLCAIHAK
Subjt:  KKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTMLCAIHAK

Query:  RVTIKPNTPRPYSLVIFPVVPIDPLNVIHFLCSFYAVKKDFELARRLGGKGRPW
        RVTI                                +KKDFELARRLGGKGRPW
Subjt:  RVTIKPNTPRPYSLVIFPVVPIDPLNVIHFLCSFYAVKKDFELARRLGGKGRPW

TrEMBL top hitse value%identityAlignment
A0A1S3CG56 Histone H3.23.5e-3659.74Show/hide
Query:  KKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTMLCAIHAK
        K++ RF+PGTVALREIR+LQKSWNLLIPASCFIRAV+EVS QLAPQI RWQAEAL+ALQE                   AAED+LVHLFEDTMLCAIHAK
Subjt:  KKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTMLCAIHAK

Query:  RVTIKPNTPRPYSLVIFPVVPIDPLNVIHFLCSFYAVKKDFELARRLGGKGRPW
        RVTI                                +KKDFELARRLGGKGRPW
Subjt:  RVTIKPNTPRPYSLVIFPVVPIDPLNVIHFLCSFYAVKKDFELARRLGGKGRPW

A0A2P5D1U0 Histone H3.21.8e-3253.9Show/hide
Query:  KKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTMLCAIHAK
        +K+RR++PGTVALREIRH QK+W LLIPA+ FIR+V+E+S QLAP I RWQAEAL+ALQE                   AAED+LVHLFED+MLCAIHAK
Subjt:  KKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTMLCAIHAK

Query:  RVTIKPNTPRPYSLVIFPVVPIDPLNVIHFLCSFYAVKKDFELARRLGGKGRPW
        RVT+                                +KKDFELARRLGGKGRPW
Subjt:  RVTIKPNTPRPYSLVIFPVVPIDPLNVIHFLCSFYAVKKDFELARRLGGKGRPW

A0A6J1DTT5 Histone H3.21.6e-3658.39Show/hide
Query:  PTSRKIGKKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTM
        P +R  GKK RRF+PGTVALREIR  QK+WNLLIPAS FIRAV+EVSYQLAP+I RWQAEAL+ALQE                   AAED+LVHLFEDTM
Subjt:  PTSRKIGKKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTM

Query:  LCAIHAKRVTIKPNTPRPYSLVIFPVVPIDPLNVIHFLCSFYAVKKDFELARRLGGKGRPW
        LCAIHAKRVTI                                +KKDFELARRLGGKGRPW
Subjt:  LCAIHAKRVTIKPNTPRPYSLVIFPVVPIDPLNVIHFLCSFYAVKKDFELARRLGGKGRPW

A0A6J1H6R9 Histone H3.28.4e-3860.25Show/hide
Query:  PTSRKIGKKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTM
        P SR  GKK RRF+PGTVALREIR LQKSWNLLIPAS FIRAV+EVSYQLAPQ+ RWQAEAL+ALQE                   AAED+LVHLFEDTM
Subjt:  PTSRKIGKKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTM

Query:  LCAIHAKRVTIKPNTPRPYSLVIFPVVPIDPLNVIHFLCSFYAVKKDFELARRLGGKGRPW
        LCAIHAKRVTI                                +KKDFELARRLGGKGRPW
Subjt:  LCAIHAKRVTIKPNTPRPYSLVIFPVVPIDPLNVIHFLCSFYAVKKDFELARRLGGKGRPW

A0A6J1KTZ4 Histone H3.28.4e-3860.25Show/hide
Query:  PTSRKIGKKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTM
        P SR  GKK RRF+PGTVALREIR LQKSWNLLIPAS FIRAV+EVSYQLAPQ+ RWQAEAL+ALQE                   AAED+LVHLFEDTM
Subjt:  PTSRKIGKKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTM

Query:  LCAIHAKRVTIKPNTPRPYSLVIFPVVPIDPLNVIHFLCSFYAVKKDFELARRLGGKGRPW
        LCAIHAKRVTI                                +KKDFELARRLGGKGRPW
Subjt:  LCAIHAKRVTIKPNTPRPYSLVIFPVVPIDPLNVIHFLCSFYAVKKDFELARRLGGKGRPW

SwissProt top hitse value%identityAlignment
P81195 Histone H3-1 (Fragment)3.0e-1651.89Show/hide
Query:  KKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTMLCAIHAK
        KK  RF+PGTVALREIR  QKS  LLI    F R VRE++ +    + R+Q++A+LALQE                   AAE Y+V LFEDT LCAIHAK
Subjt:  KKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTMLCAIHAK

Query:  RVTIKP
        RVTI P
Subjt:  RVTIKP

P81199 Histone H3-5 (Fragment)1.3e-1652.83Show/hide
Query:  KKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTMLCAIHAK
        KK  RF+PGTVALREIR  QKS  LLI    F R VRE++ +    + R+Q++A+LALQE                   AAE YLV LFEDT LCAIHAK
Subjt:  KKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTMLCAIHAK

Query:  RVTIKP
        RVTI P
Subjt:  RVTIKP

P81200 Histone H3-6 (Fragment)2.3e-1651.89Show/hide
Query:  KKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTMLCAIHAK
        KK  RF+PGTVALREIR  QKS  LLI    F R VRE++ +    + R+Q++A+LALQE                   AAE Y+V LFEDT LCAIHAK
Subjt:  KKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTMLCAIHAK

Query:  RVTIKP
        RVTI P
Subjt:  RVTIKP

Q7RXR3 Histone H3-like centromeric protein hH3v9.3e-1849.52Show/hide
Query:  KRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAP--QIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTMLCAIHA
        K+RR++PGT+AL+EIR+ Q++ +LL+    F R VRE++ Q  P  +  RWQ++A+LALQE                   AAE +LVHLFEDT LCAIHA
Subjt:  KRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAP--QIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTMLCAIHA

Query:  KRVTI
        KRVTI
Subjt:  KRVTI

Q8RVQ9 Histone H3-like centromeric protein HTR124.0e-2949.68Show/hide
Query:  KKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLA-PQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTMLCAIHA
        KK  R++PGTVAL+EIRH QK  NLLIPA+ FIR VR +++ LA PQI RW AEAL+ALQE                   AAEDYLV LF D+MLCAIHA
Subjt:  KKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLA-PQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTMLCAIHA

Query:  KRVTIKPNTPRPYSLVIFPVVPIDPLNVIHFLCSFYAVKKDFELARRLGGKGRPW
        +RVT+                                ++KDFELARRLGGKGRPW
Subjt:  KRVTIKPNTPRPYSLVIFPVVPIDPLNVIHFLCSFYAVKKDFELARRLGGKGRPW

Arabidopsis top hitse value%identityAlignment
AT1G01370.1 Histone superfamily protein2.9e-3049.68Show/hide
Query:  KKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLA-PQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTMLCAIHA
        KK  R++PGTVAL+EIRH QK  NLLIPA+ FIR VR +++ LA PQI RW AEAL+ALQE                   AAEDYLV LF D+MLCAIHA
Subjt:  KKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLA-PQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTMLCAIHA

Query:  KRVTIKPNTPRPYSLVIFPVVPIDPLNVIHFLCSFYAVKKDFELARRLGGKGRPW
        +RVT+                                ++KDFELARRLGGKGRPW
Subjt:  KRVTIKPNTPRPYSLVIFPVVPIDPLNVIHFLCSFYAVKKDFELARRLGGKGRPW

AT1G01370.2 Histone superfamily protein2.9e-3049.68Show/hide
Query:  KKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLA-PQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTMLCAIHA
        KK  R++PGTVAL+EIRH QK  NLLIPA+ FIR VR +++ LA PQI RW AEAL+ALQE                   AAEDYLV LF D+MLCAIHA
Subjt:  KKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLA-PQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTMLCAIHA

Query:  KRVTIKPNTPRPYSLVIFPVVPIDPLNVIHFLCSFYAVKKDFELARRLGGKGRPW
        +RVT+                                ++KDFELARRLGGKGRPW
Subjt:  KRVTIKPNTPRPYSLVIFPVVPIDPLNVIHFLCSFYAVKKDFELARRLGGKGRPW

AT4G40030.1 Histone superfamily protein8.1e-1751.89Show/hide
Query:  KKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTMLCAIHAK
        KK  R++PGTVALREIR  QKS  LLI    F R VRE++      + R+Q+ A+LALQE                   AAE YLV LFEDT LCAIHAK
Subjt:  KKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTMLCAIHAK

Query:  RVTIKP
        RVTI P
Subjt:  RVTIKP

AT4G40040.1 Histone superfamily protein8.1e-1751.89Show/hide
Query:  KKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTMLCAIHAK
        KK  R++PGTVALREIR  QKS  LLI    F R VRE++      + R+Q+ A+LALQE                   AAE YLV LFEDT LCAIHAK
Subjt:  KKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTMLCAIHAK

Query:  RVTIKP
        RVTI P
Subjt:  RVTIKP

AT4G40040.2 Histone superfamily protein8.1e-1751.89Show/hide
Query:  KKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTMLCAIHAK
        KK  R++PGTVALREIR  QKS  LLI    F R VRE++      + R+Q+ A+LALQE                   AAE YLV LFEDT LCAIHAK
Subjt:  KKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYLVHLFEDTMLCAIHAK

Query:  RVTIKP
        RVTI P
Subjt:  RVTIKP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGGCAAGGTCAAAGTAAGTTCTTTTATTCAGGCTTTTCTTCACCTTTGTCCAACATCAAGGAAAATCGGGAAAAAAAGAAGACGCTTCAAACCAGGGACAGTGGC
ATTGAGGGAAATACGGCATCTCCAGAAATCATGGAATCTGCTAATTCCAGCTAGCTGTTTCATCCGAGCAGTAAGAGAAGTAAGCTACCAGTTGGCTCCACAGATTAGGC
GTTGGCAAGCTGAAGCTTTACTAGCTCTTCAGGAAGTTATGCTGTATGTGCAATCTCAAATTGCATCACCTGTTTCTATGAATACTGATTGTGCAGCAGAAGATTACTTG
GTTCATCTATTTGAAGATACAATGCTATGTGCTATTCATGCCAAGCGTGTAACTATCAAACCGAACACTCCCAGACCTTATTCTCTTGTCATCTTCCCAGTTGTTCCTAT
TGATCCTCTGAATGTTATCCATTTCCTTTGTTCTTTCTATGCAGTGAAAAAGGATTTTGAACTGGCACGCCGATTGGGAGGGAAAGGGAGGCCATGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGGGCAAGGTCAAAGTAAGTTCTTTTATTCAGGCTTTTCTTCACCTTTGTCCAACATCAAGGAAAATCGGGAAAAAAAGAAGACGCTTCAAACCAGGGACAGTGGC
ATTGAGGGAAATACGGCATCTCCAGAAATCATGGAATCTGCTAATTCCAGCTAGCTGTTTCATCCGAGCAGTAAGAGAAGTAAGCTACCAGTTGGCTCCACAGATTAGGC
GTTGGCAAGCTGAAGCTTTACTAGCTCTTCAGGAAGTTATGCTGTATGTGCAATCTCAAATTGCATCACCTGTTTCTATGAATACTGATTGTGCAGCAGAAGATTACTTG
GTTCATCTATTTGAAGATACAATGCTATGTGCTATTCATGCCAAGCGTGTAACTATCAAACCGAACACTCCCAGACCTTATTCTCTTGTCATCTTCCCAGTTGTTCCTAT
TGATCCTCTGAATGTTATCCATTTCCTTTGTTCTTTCTATGCAGTGAAAAAGGATTTTGAACTGGCACGCCGATTGGGAGGGAAAGGGAGGCCATGGTGA
Protein sequenceShow/hide protein sequence
MWGKVKVSSFIQAFLHLCPTSRKIGKKRRRFKPGTVALREIRHLQKSWNLLIPASCFIRAVREVSYQLAPQIRRWQAEALLALQEVMLYVQSQIASPVSMNTDCAAEDYL
VHLFEDTMLCAIHAKRVTIKPNTPRPYSLVIFPVVPIDPLNVIHFLCSFYAVKKDFELARRLGGKGRPW