CuGenDBv2

Gene ID	Spg014845
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic
Genome location	scaffold3:44761239..44763924
RNA-Seq Expression	Spg014845
Synteny	Spg014845
Gene Ontology terms	GO:0009507 - chloroplast (cellular component)
InterPro domains	IPR003772 - Large ribosomal RNA subunit accumulation protein YceD

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0067976.1 uncharacterized protein E6C27_scaffold138G001640 [Cucumis melo var. makuwa]

3.5e-153

84.26

Show/hide

Query:  MSATFPTSSIVSSSHFNEFVKVFCLKSKGNASFNSHFRFVGCKVPWKFRKNIQTSLGSDPCIMLKSTSLKCVKPTYQSFFEDNSIITEWEDQEGDIEEMD
        M ATFPTSS+VSSSH  EF+ VF  KSKGN SFNSHFR     VPW+F +NIQ SLG DPCI +KSTS+KCVKPTYQS FEDNSIIT+W DQEGDIEEM 
Subjt:  MSATFPTSSIVSSSHFNEFVKVFCLKSKGNASFNSHFRFVGCKVPWKFRKNIQTSLGSDPCIMLKSTSLKCVKPTYQSFFEDNSIITEWEDQEGDIEEMD

Query:  SPWEGAVIYKRNASVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKVVKDFPFGTPVQISVDVTRKEKKLWLDGIVKTVITLNCYRCCEPAPECVF
        SPWEGAVIYKRN+SVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRVTK VKD+PFGTPVQISVDVTRK+KKL LDGIVKTVITLNCYRCCEPAPEC+F
Subjt:  SPWEGAVIYKRNASVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKVVKDFPFGTPVQISVDVTRKEKKLWLDGIVKTVITLNCYRCCEPAPECVF

Query:  SNFSIILSEEPIEEPEVINMGIISGQDMFKTYDVNSDEDDGELIDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTESCN
        SNFSI+LSEEPIEEP+VINMGIISGQD+FKT + NSDEDD E +DLDDQLYFP V+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNT SCN
Subjt:  SNFSIILSEEPIEEPEVINMGIISGQDMFKTYDVNSDEDDGELIDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTESCN

Query:  CSKQSVKKNDFGPLGNLKRQMQKS
        CSKQ+VKKNDFGPLGNLKR+MQ +
Subjt:  CSKQSVKKNDFGPLGNLKRQMQKS

XP_004136166.1 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic [Cucumis sativus]

3.2e-151

83.33

Show/hide

Query:  MSATFPTSSIVSSSHFNEFVKVFCLKSKGNASFNSHFRFVGCKVPWKFRKNIQTSLGSDPCIMLKSTSLKCVKPTYQSFFEDNSIITEWEDQEGDIEEMD
        M ATFPTSS+VSSSH NEF+ VF  KSKG  SF+SHFR     VPW+  +NIQ SLG DPCI +KST++KCVKPTYQS FEDNSIIT+WEDQEGDIEEMD
Subjt:  MSATFPTSSIVSSSHFNEFVKVFCLKSKGNASFNSHFRFVGCKVPWKFRKNIQTSLGSDPCIMLKSTSLKCVKPTYQSFFEDNSIITEWEDQEGDIEEMD

Query:  SPWEGAVIYKRNASVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKVVKDFPFGTPVQISVDVTRKEKKLWLDGIVKTVITLNCYRCCEPAPECVF
        SPWEGA+IYKRN+SVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRVTK VKD+PFGTPVQISVDVTRK KKL LDGIVKTVITLNCY CCEPAPEC+F
Subjt:  SPWEGAVIYKRNASVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKVVKDFPFGTPVQISVDVTRKEKKLWLDGIVKTVITLNCYRCCEPAPECVF

Query:  SNFSIILSEEPIEEPEVINMGIISGQDMFKTYDVNSDEDDGELIDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTESCN
        SNFSIILSEEPIEEP+VINMGIISG+DMFKT + NSDEDD ELIDLDDQLYFP + KEIDISKNIRDILHLEITMN ICDPGCKG+CLNCGINLNT SC 
Subjt:  SNFSIILSEEPIEEPEVINMGIISGQDMFKTYDVNSDEDDGELIDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTESCN

Query:  CSKQSVKKNDFGPLGNLKRQMQKS
        CSKQ+VKKNDFGPLG+LKR+MQ +
Subjt:  CSKQSVKKNDFGPLGNLKRQMQKS

XP_008451550.1 PREDICTED: uncharacterized protein LOC103492797 isoform X1 [Cucumis melo]

7.7e-153

83.95

Show/hide

Query:  MSATFPTSSIVSSSHFNEFVKVFCLKSKGNASFNSHFRFVGCKVPWKFRKNIQTSLGSDPCIMLKSTSLKCVKPTYQSFFEDNSIITEWEDQEGDIEEMD
        M ATFPTSS+VSSSH  EF+ VF  +SKGN SFNSHFR     VPW+F +NIQ SLG DPCI +KSTS+KCVKPTYQS FEDNSIIT+W DQEGDIEEM 
Subjt:  MSATFPTSSIVSSSHFNEFVKVFCLKSKGNASFNSHFRFVGCKVPWKFRKNIQTSLGSDPCIMLKSTSLKCVKPTYQSFFEDNSIITEWEDQEGDIEEMD

Query:  SPWEGAVIYKRNASVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKVVKDFPFGTPVQISVDVTRKEKKLWLDGIVKTVITLNCYRCCEPAPECVF
        SPWEGAVIYKRN+SVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRVTK VKD+PFGTPVQISVDVTRK+KKL LDGIVKTVITLNCYRCCEPAPEC+F
Subjt:  SPWEGAVIYKRNASVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKVVKDFPFGTPVQISVDVTRKEKKLWLDGIVKTVITLNCYRCCEPAPECVF

Query:  SNFSIILSEEPIEEPEVINMGIISGQDMFKTYDVNSDEDDGELIDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTESCN
        SNFSI+LSEEPIEEP+VINMGIISGQD+FKT + NSDEDD E +DLDDQLYFP V+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNT SCN
Subjt:  SNFSIILSEEPIEEPEVINMGIISGQDMFKTYDVNSDEDDGELIDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTESCN

Query:  CSKQSVKKNDFGPLGNLKRQMQKS
        CSKQ+VKKNDFGPLGNLKR+MQ +
Subjt:  CSKQSVKKNDFGPLGNLKRQMQKS

XP_008451552.1 PREDICTED: uncharacterized protein LOC103492797 isoform X2 [Cucumis melo]

7.7e-153

83.95

Show/hide

Query:  MSATFPTSSIVSSSHFNEFVKVFCLKSKGNASFNSHFRFVGCKVPWKFRKNIQTSLGSDPCIMLKSTSLKCVKPTYQSFFEDNSIITEWEDQEGDIEEMD
        M ATFPTSS+VSSSH  EF+ VF  +SKGN SFNSHFR     VPW+F +NIQ SLG DPCI +KSTS+KCVKPTYQS FEDNSIIT+W DQEGDIEEM 
Subjt:  MSATFPTSSIVSSSHFNEFVKVFCLKSKGNASFNSHFRFVGCKVPWKFRKNIQTSLGSDPCIMLKSTSLKCVKPTYQSFFEDNSIITEWEDQEGDIEEMD

Query:  SPWEGAVIYKRNASVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKVVKDFPFGTPVQISVDVTRKEKKLWLDGIVKTVITLNCYRCCEPAPECVF
        SPWEGAVIYKRN+SVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRVTK VKD+PFGTPVQISVDVTRK+KKL LDGIVKTVITLNCYRCCEPAPEC+F
Subjt:  SPWEGAVIYKRNASVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKVVKDFPFGTPVQISVDVTRKEKKLWLDGIVKTVITLNCYRCCEPAPECVF

Query:  SNFSIILSEEPIEEPEVINMGIISGQDMFKTYDVNSDEDDGELIDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTESCN
        SNFSI+LSEEPIEEP+VINMGIISGQD+FKT + NSDEDD E +DLDDQLYFP V+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNT SCN
Subjt:  SNFSIILSEEPIEEPEVINMGIISGQDMFKTYDVNSDEDDGELIDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTESCN

Query:  CSKQSVKKNDFGPLGNLKRQMQKS
        CSKQ+VKKNDFGPLGNLKR+MQ +
Subjt:  CSKQSVKKNDFGPLGNLKRQMQKS

XP_038897008.1 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic-like [Benincasa hispida]

5.5e-159

87.96

Show/hide

Query:  MSATFPTSSIVSSSHFNEFVKVFCLKSKGNASFNSHFRFVGCKVPWKFRKNIQTSLGSDPCIMLKSTSLKCVKPTYQSFFEDNSIITEWEDQEGDIEEMD
        MSATFPTSS+VSSSH NEF+KVF LKSKGN SF+SH     C+VPWKF +NIQ SLG D CIMLKSTS+KCVKPTYQS FEDNSIIT+WED +GDIEEM 
Subjt:  MSATFPTSSIVSSSHFNEFVKVFCLKSKGNASFNSHFRFVGCKVPWKFRKNIQTSLGSDPCIMLKSTSLKCVKPTYQSFFEDNSIITEWEDQEGDIEEMD

Query:  SPWEGAVIYKRNASVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKVVKDFPFGTPVQISVDVTRKEKKLWLDGIVKTVITLNCYRCCEPAPECVF
        SPWEGAVIYKRN+SVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRV KVVKD+PFGTPVQISVDVTRKEKKL LDGIVKTVITLNCYRCCE APEC+F
Subjt:  SPWEGAVIYKRNASVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKVVKDFPFGTPVQISVDVTRKEKKLWLDGIVKTVITLNCYRCCEPAPECVF

Query:  SNFSIILSEEPIEEPEVINMGIISGQDMFKTYDVNSDEDDGELIDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTESCN
        SNFSIILSEEPIEEP+VINMGIISGQDMFKTYD NSDEDD EL+DLDDQLYFPL+EKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNT SCN
Subjt:  SNFSIILSEEPIEEPEVINMGIISGQDMFKTYDVNSDEDDGELIDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTESCN

Query:  CSKQSVKKNDFGPLGNLKRQMQKS
        CSKQ+VKKNDFGPLGNLK+QMQK+
Subjt:  CSKQSVKKNDFGPLGNLKRQMQKS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAY7 Uncharacterized protein

1.6e-151

83.33

Show/hide

Query:  MSATFPTSSIVSSSHFNEFVKVFCLKSKGNASFNSHFRFVGCKVPWKFRKNIQTSLGSDPCIMLKSTSLKCVKPTYQSFFEDNSIITEWEDQEGDIEEMD
        M ATFPTSS+VSSSH NEF+ VF  KSKG  SF+SHFR     VPW+  +NIQ SLG DPCI +KST++KCVKPTYQS FEDNSIIT+WEDQEGDIEEMD
Subjt:  MSATFPTSSIVSSSHFNEFVKVFCLKSKGNASFNSHFRFVGCKVPWKFRKNIQTSLGSDPCIMLKSTSLKCVKPTYQSFFEDNSIITEWEDQEGDIEEMD

Query:  SPWEGAVIYKRNASVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKVVKDFPFGTPVQISVDVTRKEKKLWLDGIVKTVITLNCYRCCEPAPECVF
        SPWEGA+IYKRN+SVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRVTK VKD+PFGTPVQISVDVTRK KKL LDGIVKTVITLNCY CCEPAPEC+F
Subjt:  SPWEGAVIYKRNASVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKVVKDFPFGTPVQISVDVTRKEKKLWLDGIVKTVITLNCYRCCEPAPECVF

Query:  SNFSIILSEEPIEEPEVINMGIISGQDMFKTYDVNSDEDDGELIDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTESCN
        SNFSIILSEEPIEEP+VINMGIISG+DMFKT + NSDEDD ELIDLDDQLYFP + KEIDISKNIRDILHLEITMN ICDPGCKG+CLNCGINLNT SC 
Subjt:  SNFSIILSEEPIEEPEVINMGIISGQDMFKTYDVNSDEDDGELIDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTESCN

Query:  CSKQSVKKNDFGPLGNLKRQMQKS
        CSKQ+VKKNDFGPLG+LKR+MQ +
Subjt:  CSKQSVKKNDFGPLGNLKRQMQKS

A0A1S3BR50 uncharacterized protein LOC103492797 isoform X2

3.7e-153

83.95

Show/hide

Query:  MSATFPTSSIVSSSHFNEFVKVFCLKSKGNASFNSHFRFVGCKVPWKFRKNIQTSLGSDPCIMLKSTSLKCVKPTYQSFFEDNSIITEWEDQEGDIEEMD
        M ATFPTSS+VSSSH  EF+ VF  +SKGN SFNSHFR     VPW+F +NIQ SLG DPCI +KSTS+KCVKPTYQS FEDNSIIT+W DQEGDIEEM 
Subjt:  MSATFPTSSIVSSSHFNEFVKVFCLKSKGNASFNSHFRFVGCKVPWKFRKNIQTSLGSDPCIMLKSTSLKCVKPTYQSFFEDNSIITEWEDQEGDIEEMD

Query:  SPWEGAVIYKRNASVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKVVKDFPFGTPVQISVDVTRKEKKLWLDGIVKTVITLNCYRCCEPAPECVF
        SPWEGAVIYKRN+SVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRVTK VKD+PFGTPVQISVDVTRK+KKL LDGIVKTVITLNCYRCCEPAPEC+F
Subjt:  SPWEGAVIYKRNASVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKVVKDFPFGTPVQISVDVTRKEKKLWLDGIVKTVITLNCYRCCEPAPECVF

Query:  SNFSIILSEEPIEEPEVINMGIISGQDMFKTYDVNSDEDDGELIDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTESCN
        SNFSI+LSEEPIEEP+VINMGIISGQD+FKT + NSDEDD E +DLDDQLYFP V+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNT SCN
Subjt:  SNFSIILSEEPIEEPEVINMGIISGQDMFKTYDVNSDEDDGELIDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTESCN

Query:  CSKQSVKKNDFGPLGNLKRQMQKS
        CSKQ+VKKNDFGPLGNLKR+MQ +
Subjt:  CSKQSVKKNDFGPLGNLKRQMQKS

A0A1S3BSU8 uncharacterized protein LOC103492797 isoform X1

3.7e-153

83.95

Show/hide

Query:  MSATFPTSSIVSSSHFNEFVKVFCLKSKGNASFNSHFRFVGCKVPWKFRKNIQTSLGSDPCIMLKSTSLKCVKPTYQSFFEDNSIITEWEDQEGDIEEMD
        M ATFPTSS+VSSSH  EF+ VF  +SKGN SFNSHFR     VPW+F +NIQ SLG DPCI +KSTS+KCVKPTYQS FEDNSIIT+W DQEGDIEEM 
Subjt:  MSATFPTSSIVSSSHFNEFVKVFCLKSKGNASFNSHFRFVGCKVPWKFRKNIQTSLGSDPCIMLKSTSLKCVKPTYQSFFEDNSIITEWEDQEGDIEEMD

Query:  SPWEGAVIYKRNASVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKVVKDFPFGTPVQISVDVTRKEKKLWLDGIVKTVITLNCYRCCEPAPECVF
        SPWEGAVIYKRN+SVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRVTK VKD+PFGTPVQISVDVTRK+KKL LDGIVKTVITLNCYRCCEPAPEC+F
Subjt:  SPWEGAVIYKRNASVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKVVKDFPFGTPVQISVDVTRKEKKLWLDGIVKTVITLNCYRCCEPAPECVF

Query:  SNFSIILSEEPIEEPEVINMGIISGQDMFKTYDVNSDEDDGELIDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTESCN
        SNFSI+LSEEPIEEP+VINMGIISGQD+FKT + NSDEDD E +DLDDQLYFP V+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNT SCN
Subjt:  SNFSIILSEEPIEEPEVINMGIISGQDMFKTYDVNSDEDDGELIDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTESCN

Query:  CSKQSVKKNDFGPLGNLKRQMQKS
        CSKQ+VKKNDFGPLGNLKR+MQ +
Subjt:  CSKQSVKKNDFGPLGNLKRQMQKS

A0A5A7VN29 Uncharacterized protein

1.7e-153

84.26

Show/hide

Query:  MSATFPTSSIVSSSHFNEFVKVFCLKSKGNASFNSHFRFVGCKVPWKFRKNIQTSLGSDPCIMLKSTSLKCVKPTYQSFFEDNSIITEWEDQEGDIEEMD
        M ATFPTSS+VSSSH  EF+ VF  KSKGN SFNSHFR     VPW+F +NIQ SLG DPCI +KSTS+KCVKPTYQS FEDNSIIT+W DQEGDIEEM 
Subjt:  MSATFPTSSIVSSSHFNEFVKVFCLKSKGNASFNSHFRFVGCKVPWKFRKNIQTSLGSDPCIMLKSTSLKCVKPTYQSFFEDNSIITEWEDQEGDIEEMD

Query:  SPWEGAVIYKRNASVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKVVKDFPFGTPVQISVDVTRKEKKLWLDGIVKTVITLNCYRCCEPAPECVF
        SPWEGAVIYKRN+SVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRVTK VKD+PFGTPVQISVDVTRK+KKL LDGIVKTVITLNCYRCCEPAPEC+F
Subjt:  SPWEGAVIYKRNASVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKVVKDFPFGTPVQISVDVTRKEKKLWLDGIVKTVITLNCYRCCEPAPECVF

Query:  SNFSIILSEEPIEEPEVINMGIISGQDMFKTYDVNSDEDDGELIDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTESCN
        SNFSI+LSEEPIEEP+VINMGIISGQD+FKT + NSDEDD E +DLDDQLYFP V+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNT SCN
Subjt:  SNFSIILSEEPIEEPEVINMGIISGQDMFKTYDVNSDEDDGELIDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTESCN

Query:  CSKQSVKKNDFGPLGNLKRQMQKS
        CSKQ+VKKNDFGPLGNLKR+MQ +
Subjt:  CSKQSVKKNDFGPLGNLKRQMQKS

A0A5D3D2J4 Uncharacterized protein

4.6e-151

83.33

Show/hide

Query:  MSATFPTSSIVSSSHFNEFVKVFCLKSKGNASFNSHFRFVGCKVPWKFRKNIQTSLGSDPCIMLKSTSLKCVKPTYQSFFEDNSIITEWEDQEGDIEEMD
        M ATFPTSS+VSSSH  EF+ VF  KSKGN SFNS  R      PW+F +NIQ SLG DPCI +KSTS+KCVKPTYQS FEDNSIIT+W DQEGDIEEM 
Subjt:  MSATFPTSSIVSSSHFNEFVKVFCLKSKGNASFNSHFRFVGCKVPWKFRKNIQTSLGSDPCIMLKSTSLKCVKPTYQSFFEDNSIITEWEDQEGDIEEMD

Query:  SPWEGAVIYKRNASVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKVVKDFPFGTPVQISVDVTRKEKKLWLDGIVKTVITLNCYRCCEPAPECVF
        SPWEGAVIYKRN+SVSHVEYCTTLERLGLEKLSTDVSKSRAS MGLRVTK VKD+PFGTPVQISVDVTRK+KKL LDGIVKTVITLNCYRCCEPAPEC+F
Subjt:  SPWEGAVIYKRNASVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKVVKDFPFGTPVQISVDVTRKEKKLWLDGIVKTVITLNCYRCCEPAPECVF

Query:  SNFSIILSEEPIEEPEVINMGIISGQDMFKTYDVNSDEDDGELIDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTESCN
        SNFSI+LSEEPIEEP+VINMGIISGQD+FKT + NSDEDD E +DLDDQLYFP V+KEIDISKNIRDILHLEITMN IC+PGCKGMCLNCGINLNT SCN
Subjt:  SNFSIILSEEPIEEPEVINMGIISGQDMFKTYDVNSDEDDGELIDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTESCN

Query:  CSKQSVKKNDFGPLGNLKRQMQKS
        CSKQ+VKKNDFGPLGNLKR+MQ +
Subjt:  CSKQSVKKNDFGPLGNLKRQMQKS

SwissProt top hits

e value

%identity

Alignment

A0A1D6HQ92 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic

1.5e-53

49.79

Show/hide

Query:  FFEDNSIITEWEDQEGDIEE-MDSPWEGAVIYKRNASVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLR-VTKVVKDFPFGTPVQISVDVTRKEKKLWL
        FF      T  E +   I++ + SPWEGAV+Y+R+A+V H+EY +TLERLGL  LS+  S++RA+ +GL   T         TPV +SVDVTR+  +L L
Subjt:  FFEDNSIITEWEDQEGDIEE-MDSPWEGAVIYKRNASVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLR-VTKVVKDFPFGTPVQISVDVTRKEKKLWL

Query:  DGIVKTVITLNCYRCCEPAPECVFSNFSIILSEEPIEEPEVINMGIISGQDMFKTYDVNSDEDDGEL-IDLDDQLYFPLVEKEIDISKNIRDILHLEITM
        DGIV+TVITL C+RC EPAP+ +F+NFS++L+E+P+EE    ++G I  +D  K     +   DG+  ID DD+L+FP  +KEIDISK+IRD++HLEIT+
Subjt:  DGIVKTVITLNCYRCCEPAPECVFSNFSIILSEEPIEEPEVINMGIISGQDMFKTYDVNSDEDDGEL-IDLDDQLYFPLVEKEIDISKNIRDILHLEITM

Query:  NAICDPGCKGMCLNCGINLN-TESCNCSKQSVK
        +A+C+P CKG+CL CG NLN T SC C  ++V+
Subjt:  NAICDPGCKGMCLNCGINLN-TESCNCSKQSVK

Q9LT27 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic

5.7e-82

62.35

Show/hide

Query:  QSFFEDNSIITEWEDQEGDIEEMDSPWEGAVIYKRNASVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKVVKDFPFGTPVQISVDVTRKEKKLWL
        +SF E ++I  +WEDQE +IE+  SPWEG+V+Y+RNASV+HVEYCTTLERLGL +LSTDVSK RAS MGLRVTK VKD+P GTPVQ+SVDV RK+KKL L
Subjt:  QSFFEDNSIITEWEDQEGDIEEMDSPWEGAVIYKRNASVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKVVKDFPFGTPVQISVDVTRKEKKLWL

Query:  DGIVKTVITLNCYRCCEPAPECVFSNFSIILSEEPIEEPEVINMGIISGQDMFKTYDVNSDEDDGELIDLDDQLYFPLVEKEIDISKNIRDILHLEITMN
        DGIV+TVITL C RC E   E +FSNFS++L+EEP+EEP+VI++G   G D  K    + D++D   ID +D+L+FP   KEIDISK+IRD++HLEIT+ 
Subjt:  DGIVKTVITLNCYRCCEPAPECVFSNFSIILSEEPIEEPEVINMGIISGQDMFKTYDVNSDEDDGELIDLDDQLYFPLVEKEIDISKNIRDILHLEITMN

Query:  AICDPGCKGMCLNCGINLNTESCNCSKQSVKKNDFGPLGNLKRQMQK
        AICD  CKGMCL CG NLN   C+C ++  K   +GPLGNL+ QMQ+
Subjt:  AICDPGCKGMCLNCGINLNTESCNCSKQSVKKNDFGPLGNLKRQMQK

Arabidopsis top hits

e value

%identity

Alignment

AT3G19810.1 Protein of unknown function (DUF177)

4.0e-83

62.35

Show/hide

Query:  QSFFEDNSIITEWEDQEGDIEEMDSPWEGAVIYKRNASVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKVVKDFPFGTPVQISVDVTRKEKKLWL
        +SF E ++I  +WEDQE +IE+  SPWEG+V+Y+RNASV+HVEYCTTLERLGL +LSTDVSK RAS MGLRVTK VKD+P GTPVQ+SVDV RK+KKL L
Subjt:  QSFFEDNSIITEWEDQEGDIEEMDSPWEGAVIYKRNASVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKVVKDFPFGTPVQISVDVTRKEKKLWL

Query:  DGIVKTVITLNCYRCCEPAPECVFSNFSIILSEEPIEEPEVINMGIISGQDMFKTYDVNSDEDDGELIDLDDQLYFPLVEKEIDISKNIRDILHLEITMN
        DGIV+TVITL C RC E   E +FSNFS++L+EEP+EEP+VI++G   G D  K    + D++D   ID +D+L+FP   KEIDISK+IRD++HLEIT+ 
Subjt:  DGIVKTVITLNCYRCCEPAPECVFSNFSIILSEEPIEEPEVINMGIISGQDMFKTYDVNSDEDDGELIDLDDQLYFPLVEKEIDISKNIRDILHLEITMN

Query:  AICDPGCKGMCLNCGINLNTESCNCSKQSVKKNDFGPLGNLKRQMQK
        AICD  CKGMCL CG NLN   C+C ++  K   +GPLGNL+ QMQ+
Subjt:  AICDPGCKGMCLNCGINLNTESCNCSKQSVKKNDFGPLGNLKRQMQK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCAGCTACATTCCCCACCTCATCCATAGTTTCATCTTCTCATTTCAATGAATTTGTCAAGGTTTTCTGCTTGAAATCCAAAGGGAATGCTTCTTTCAATTCGCATTT
CCGCTTTGTTGGATGTAAAGTTCCATGGAAATTTAGGAAAAATATCCAGACAAGCTTGGGAAGTGACCCATGTATTATGCTGAAATCTACTTCCCTAAAGTGTGTGAAAC
CTACTTACCAGTCCTTTTTTGAAGACAATTCAATAATTACTGAATGGGAGGATCAAGAAGGGGACATTGAAGAGATGGACTCACCTTGGGAAGGAGCAGTTATTTACAAG
AGAAACGCTTCGGTTTCTCATGTGGAGTACTGCACAACATTAGAGAGGCTTGGATTAGAAAAGCTTTCGACTGATGTCTCGAAATCTAGAGCATCCAAGATGGGACTACG
TGTAACGAAGGTTGTGAAAGATTTTCCCTTTGGAACGCCTGTTCAAATCTCTGTTGATGTTACTAGGAAAGAAAAAAAGTTGTGGCTCGATGGGATTGTCAAAACTGTCA
TCACTCTCAATTGCTATAGGTGTTGTGAACCTGCTCCTGAATGCGTTTTCTCGAATTTCTCAATTATACTAAGCGAAGAACCGATTGAAGAACCTGAGGTCATAAATATG
GGAATCATCAGCGGGCAGGATATGTTCAAGACATATGATGTAAATAGTGATGAAGATGATGGAGAGTTGATTGATTTGGATGATCAACTCTATTTTCCTCTTGTAGAGAA
AGAAATAGATATATCAAAGAACATCAGAGACATTTTGCATCTGGAAATTACTATGAATGCGATCTGCGATCCAGGATGCAAAGGTATGTGTCTGAATTGTGGTATAAATT
TGAATACTGAAAGCTGTAACTGTAGTAAGCAGTCTGTAAAGAAGAACGATTTTGGTCCTCTTGGAAATTTGAAGAGGCAAATGCAGAAATCTTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSATFPTSSIVSSSHFNEFVKVFCLKSKGNASFNSHFRFVGCKVPWKFRKNIQTSLGSDPCIMLKSTSLKCVKPTYQSFFEDNSIITEWEDQEGDIEEMDSPWEGAVIYK
RNASVSHVEYCTTLERLGLEKLSTDVSKSRASKMGLRVTKVVKDFPFGTPVQISVDVTRKEKKLWLDGIVKTVITLNCYRCCEPAPECVFSNFSIILSEEPIEEPEVINM
GIISGQDMFKTYDVNSDEDDGELIDLDDQLYFPLVEKEIDISKNIRDILHLEITMNAICDPGCKGMCLNCGINLNTESCNCSKQSVKKNDFGPLGNLKRQMQKS

Spg014845 (gene) of Sponge gourd (cylindrica) v1 genome