CuGenDBv2

Gene ID	Spg014850
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Protein transport protein Sec61 subunit alpha
Genome location	scaffold3:44487080..44491097
RNA-Seq Expression	Spg014850
Synteny	Spg014850
Gene Ontology terms	GO:0006616 - SRP-dependent cotranslational protein targeting to membrane, translocation (biological process) GO:0031204 - posttranslational protein targeting to membrane, translocation (biological process) GO:0005784 - Sec61 translocon complex (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005048 - signal sequence binding (molecular function) GO:0008320 - protein transmembrane transporter activity (molecular function) GO:0043022 - ribosome binding (molecular function)
InterPro domains	IPR002208 - SecY/SEC61-alpha family

Homology

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GenBank top hits

e value

%identity

Alignment

KAF5956886.1 hypothetical protein HYC85_004111 [Camellia sinensis]

1.2e-12

80.85

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Query:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS
        ++ N+CENIIWKAFSPTTINSGRGAEFEGAV ALFHLLIT TDK+++
Subjt:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS

KJB57358.1 hypothetical protein B456_009G160200 [Gossypium raimondii]

1.2e-12

63.49

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Query:  IYSDSGPKLTYTELFLLSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS
        +Y   G  L       ++ N+CENIIWKAFSPTTINSGRGAEFEGAV A+FHLLIT TDK+ +
Subjt:  IYSDSGPKLTYTELFLLSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS

PTQ43246.1 hypothetical protein MARPO_0026s0117 [Marchantia polymorpha]

1.6e-12

80.85

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Query:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS
        ++ N+CENIIWKAFSPTTINSGRGAEFEGAV ALFHLLIT TDK+ +
Subjt:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS

RLN40244.1 protein transport protein Sec61 subunit alpha-like isoform X1 [Panicum miliaceum]

1.2e-12

80.85

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Query:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS
        ++ N+CENIIWKAFSPTTINSGRGAEFEGAV ALFHLLIT TDK+++
Subjt:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS

XP_026399995.1 protein transport protein Sec61 subunit alpha-like [Papaver somniferum]

1.2e-12

82.98

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Query:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS
        ++ N+CENIIWKAFSPTTINSGRGAEFEGAV ALFHLLIT TDKI +
Subjt:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS

TrEMBL top hits

e value

%identity

Alignment

A0A0D2S257 Uncharacterized protein

5.9e-13

63.49

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Query:  IYSDSGPKLTYTELFLLSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS
        +Y   G  L       ++ N+CENIIWKAFSPTTINSGRGAEFEGAV A+FHLLIT TDK+ +
Subjt:  IYSDSGPKLTYTELFLLSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS

A0A1S3TL35 protein transport protein Sec61 subunit alpha-like

7.7e-13

80.85

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Query:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS
        ++ N+CENIIWKAFSPTTINSGRGAEFEGAV ALFHLLIT TDK+ +
Subjt:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS

A0A3L6TMY1 Protein transport protein Sec61 subunit alpha-like isoform X1

5.9e-13

80.85

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Query:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS
        ++ N+CENIIWKAFSPTTINSGRGAEFEGAV ALFHLLIT TDK+++
Subjt:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS

A0A4Y7I954 Plug_translocon domain-containing protein

5.9e-13

82.98

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Query:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS
        ++ N+CENIIWKAFSPTTINSGRGAEFEGAV ALFHLLIT TDKI +
Subjt:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS

A0A7J7HXM0 Plug_translocon domain-containing protein

5.9e-13

80.85

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Query:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS
        ++ N+CENIIWKAFSPTTINSGRGAEFEGAV ALFHLLIT TDK+++
Subjt:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS

SwissProt top hits

e value

%identity

Alignment

Q2KHX4 Protein transport protein Sec61 subunit alpha isoform 2

3.3e-13

70.21

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Query:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS
        ++ N+CE I+WKAFSPTTIN+GRG EFEGAV ALFHLL T TDK+ +
Subjt:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS

Q8AY33 Protein transport protein Sec61 subunit alpha

1.9e-13

66.67

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Query:  LLSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS
        L++ N+CE I+WKAFSPTT+N+GRG EFEGA+ ALFHLL T TDK+ +
Subjt:  LLSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS

Q90ZM2 Protein transport protein Sec61 subunit alpha-like 1

5.7e-13

65.96

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Query:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS
        ++ N+CE I+WKAFSPTT+N+GRG EFEGA+ ALFHLL T TDK+ +
Subjt:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS

Q9H9S3 Protein transport protein Sec61 subunit alpha isoform 2

3.3e-13

70.21

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Query:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS
        ++ N+CE I+WKAFSPTTIN+GRG EFEGAV ALFHLL T TDK+ +
Subjt:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS

Q9JLR1 Protein transport protein Sec61 subunit alpha isoform 2

3.3e-13

70.21

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Query:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS
        ++ N+CE I+WKAFSPTTIN+GRG EFEGAV ALFHLL T TDK+ +
Subjt:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS

Arabidopsis top hits

e value

%identity

Alignment

AT1G29310.1 SecY protein transport family protein

3.1e-14

73.33

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Query:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKI
        ++ N+CE+IIWKAFSPTTIN+GRGAEFEGAV ALFH+LIT ++K+
Subjt:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKI

AT1G78720.1 SecY protein transport family protein

1.2e-15

76.6

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Query:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS
        ++ N+CE+IIWKAFSPTTINSGRGA+FEGAV ALFHLLIT TDK+ +
Subjt:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKINS

AT2G34250.1 SecY protein transport family protein

3.1e-14

73.33

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Query:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKI
        ++ N+CE+IIWKAFSPTTIN+GRGAEFEGAV ALFH+LIT ++K+
Subjt:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKI

AT2G34250.2 SecY protein transport family protein

3.1e-14

73.33

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Query:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKI
        ++ N+CE+IIWKAFSPTTIN+GRGAEFEGAV ALFH+LIT ++K+
Subjt:  LSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITITDKI

AT4G23000.1 Calcineurin-like metallo-phosphoesterase superfamily protein

5.2e-14

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Query:  KLACNGSCPGPSDGISPIYPLWTTFIGLYIANYVVERSTG
        +LACNGSCP  SD ISPIY LW TFIGLYIANYVVERSTG
Subjt:  KLACNGSCPGPSDGISPIYPLWTTFIGLYIANYVVERSTG

Sequences

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CDS sequence

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ATGATCTCTCTCTCGCACCCCACAGCTCCTCCAGCCACCGGCGCACGAAGCGACAACAGTTGGGATCTCCTCCTTCGGTGTGTATGCGCAGCAGTGATTCGACATGATTC
CAACTACTCCTCTTCGTGGACAGCAGCTCTCCTTCAAGTTCCAATGATTTCGAGTTGTGGGTACCCATTGAGATTGGAGCTCGAGTCGTTGAATTTGGATCGAATTAGAA
CCACACCAGCAAGAAAGTTAGCTTGCAATGGCTCATGTCCTGGTCCATCTGATGGGATTTCACCCATATATCCATTATGGACTACATTCATTGGGCTTTACATTGCAAAC
TATGTGGTGGAGCGCTCAACAGGTGGAAAGCAATTGCTTGCATTAGGTGAACTTGCTACAACGTTCTCTGTTGCATCCGGTATAAAGTTTTTGAATGATGGTATCATTGG
TGCAGCTTATGTTAGTCTTGCAACAGTTGCTGGCTTCATATGGTGGTTTATATACTCTGACAGTGGTCCTAAGCTAACTTACACCGAGTTGTTCTTACTCTCATTGAACC
TATGTGAGAACATTATCTGGAAGGCATTTAGTCCAACCACCATTAACAGTGGAAGAGGAGCTGAATTTGAAGGAGCTGTCAATGCATTGTTCCATCTGTTGATTACCATA
ACAGACAAGATTAACAGTTTCATAATGAGTAGCATTCCTGAAGGGATTTTTGAGCGTCCTTTTATTATTTCTCGGAGAAACTTTAGCAAATGA

mRNA sequence

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Protein sequence

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MISLSHPTAPPATGARSDNSWDLLLRCVCAAVIRHDSNYSSSWTAALLQVPMISSCGYPLRLELESLNLDRIRTTPARKLACNGSCPGPSDGISPIYPLWTTFIGLYIAN
YVVERSTGGKQLLALGELATTFSVASGIKFLNDGIIGAAYVSLATVAGFIWWFIYSDSGPKLTYTELFLLSLNLCENIIWKAFSPTTINSGRGAEFEGAVNALFHLLITI
TDKINSFIMSSIPEGIFERPFIISRRNFSK

Spg014850 (gene) of Sponge gourd (cylindrica) v1 genome